More than 300 homologs were found in PanDaTox collection
for query gene Swit_2028 on replicon NC_009511
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009511  Swit_2028  short-chain dehydrogenase/reductase SDR  100 
 
 
251 aa  491  9.999999999999999e-139  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2257  short-chain dehydrogenase/reductase SDR  39.36 
 
 
268 aa  151  8.999999999999999e-36  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.606485 
 
 
-
 
NC_009338  Mflv_2071  short-chain dehydrogenase/reductase SDR  38.96 
 
 
258 aa  140  9.999999999999999e-33  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.70228  normal  0.023925 
 
 
-
 
NC_009077  Mjls_4347  short-chain dehydrogenase/reductase SDR  37.8 
 
 
256 aa  139  3.9999999999999997e-32  Mycobacterium sp. JLS  Bacteria  normal  normal  0.206497 
 
 
-
 
NC_008146  Mmcs_4116  short-chain dehydrogenase/reductase SDR  37.4 
 
 
256 aa  137  2e-31  Mycobacterium sp. MCS  Bacteria  normal  0.165575  n/a   
 
 
-
 
NC_008705  Mkms_4191  short-chain dehydrogenase/reductase SDR  37.4 
 
 
256 aa  137  2e-31  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4643  short-chain dehydrogenase/reductase SDR  39.09 
 
 
274 aa  135  4e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009427  Saro_3487  short-chain dehydrogenase/reductase SDR  37.4 
 
 
272 aa  132  6.999999999999999e-30  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1542  short-chain dehydrogenase/reductase SDR  36.63 
 
 
256 aa  131  1.0000000000000001e-29  Mycobacterium sp. MCS  Bacteria  normal  0.694275  n/a   
 
 
-
 
NC_009077  Mjls_1513  short-chain dehydrogenase/reductase SDR  36.63 
 
 
256 aa  131  1.0000000000000001e-29  Mycobacterium sp. JLS  Bacteria  normal  0.71611  normal 
 
 
-
 
NC_008705  Mkms_1565  short-chain dehydrogenase/reductase SDR  36.63 
 
 
256 aa  131  1.0000000000000001e-29  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4007  short-chain dehydrogenase/reductase SDR  31.33 
 
 
247 aa  130  3e-29  Flavobacterium johnsoniae UW101  Bacteria  normal  0.466284  n/a   
 
 
-
 
NC_009511  Swit_0340  short-chain dehydrogenase/reductase SDR  36.14 
 
 
265 aa  129  6e-29  Sphingomonas wittichii RW1  Bacteria  normal  0.447883  normal 
 
 
-
 
NC_013165  Shel_01070  3-oxoacyl-(acyl-carrier-protein) reductase  39.43 
 
 
238 aa  125  5e-28  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.256883 
 
 
-
 
NC_010172  Mext_1326  short-chain dehydrogenase/reductase SDR  38 
 
 
254 aa  123  3e-27  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.393683 
 
 
-
 
NC_009441  Fjoh_4444  short-chain dehydrogenase/reductase SDR  35.22 
 
 
246 aa  121  9e-27  Flavobacterium johnsoniae UW101  Bacteria  normal  0.740498  n/a   
 
 
-
 
NC_013739  Cwoe_2062  short-chain dehydrogenase/reductase SDR  38.46 
 
 
278 aa  120  1.9999999999999998e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1526  short-chain dehydrogenase/reductase SDR  37.6 
 
 
254 aa  120  1.9999999999999998e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5444  short-chain dehydrogenase/reductase SDR  36.61 
 
 
255 aa  120  1.9999999999999998e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.844576  n/a   
 
 
-
 
NC_013132  Cpin_2887  short-chain dehydrogenase/reductase SDR  34.68 
 
 
251 aa  120  1.9999999999999998e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.755812  normal 
 
 
-
 
NC_009667  Oant_1136  short-chain dehydrogenase/reductase SDR  34.8 
 
 
249 aa  119  4.9999999999999996e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.399133  n/a   
 
 
-
 
NC_009953  Sare_3297  short-chain dehydrogenase/reductase SDR  38.31 
 
 
253 aa  119  4.9999999999999996e-26  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000354255 
 
 
-
 
NC_009077  Mjls_1738  3-ketoacyl-(acyl-carrier-protein) reductase  33.46 
 
 
264 aa  119  4.9999999999999996e-26  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1757  3-ketoacyl-(acyl-carrier-protein) reductase  33.46 
 
 
264 aa  119  4.9999999999999996e-26  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1804  3-ketoacyl-(acyl-carrier-protein) reductase  33.46 
 
 
264 aa  119  4.9999999999999996e-26  Mycobacterium sp. KMS  Bacteria  normal  normal  0.390803 
 
 
-
 
NC_013132  Cpin_0128  short-chain dehydrogenase/reductase SDR  33.99 
 
 
246 aa  118  7e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1608  short-chain dehydrogenase/reductase SDR  37.3 
 
 
250 aa  118  7.999999999999999e-26  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2862  short chain dehydrogenase  36.14 
 
 
255 aa  118  9.999999999999999e-26  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0236  short-chain dehydrogenase/reductase SDR  35.43 
 
 
255 aa  118  9.999999999999999e-26  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00815339 
 
 
-
 
NC_011666  Msil_3366  short-chain dehydrogenase/reductase SDR  35.6 
 
 
250 aa  118  9.999999999999999e-26  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008686  Pden_1255  3-ketoacyl-(acyl-carrier-protein) reductase  35.25 
 
 
247 aa  117  9.999999999999999e-26  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2918  short-chain dehydrogenase/reductase SDR  37.7 
 
 
251 aa  117  9.999999999999999e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.154844 
 
 
-
 
NC_013595  Sros_4576  short-chain dehydrogenase/reductase SDR  34.94 
 
 
248 aa  117  1.9999999999999998e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.113643 
 
 
-
 
NC_009675  Anae109_3255  short-chain dehydrogenase/reductase SDR  38.87 
 
 
250 aa  117  1.9999999999999998e-25  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7515  short-chain dehydrogenase/reductase SDR  36.89 
 
 
246 aa  116  3.9999999999999997e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1378  Short-chain dehydrogenase/reductase SDR  38.31 
 
 
247 aa  116  3.9999999999999997e-25  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2517  short-chain dehydrogenase/reductase SDR  37.16 
 
 
257 aa  116  3.9999999999999997e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.401645  n/a   
 
 
-
 
NC_009483  Gura_1877  3-oxoacyl-(acyl-carrier-protein) reductase  36.69 
 
 
246 aa  115  5e-25  Geobacter uraniireducens Rf4  Bacteria  normal  0.627616  n/a   
 
 
-
 
NC_008699  Noca_3863  3-ketoacyl-(acyl-carrier-protein) reductase  35.18 
 
 
250 aa  115  5e-25  Nocardioides sp. JS614  Bacteria  normal  0.385562  n/a   
 
 
-
 
NC_007517  Gmet_1601  3-oxoacyl-[acyl-carrier-protein] reductase  36.29 
 
 
246 aa  115  6e-25  Geobacter metallireducens GS-15  Bacteria  normal  0.0250629  normal  0.870822 
 
 
-
 
NC_009767  Rcas_3569  short-chain dehydrogenase/reductase SDR  37.45 
 
 
257 aa  115  6.9999999999999995e-25  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_4369  3-ketoacyl-(acyl-carrier-protein) reductase  34.52 
 
 
246 aa  115  7.999999999999999e-25  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0851  short-chain dehydrogenase/reductase SDR  36.69 
 
 
254 aa  115  7.999999999999999e-25  Caulobacter sp. K31  Bacteria  normal  0.0597888  normal  0.281853 
 
 
-
 
NC_003910  CPS_1680  short chain dehydrogenase/reductase family oxidoreductase  30.56 
 
 
251 aa  114  1.0000000000000001e-24  Colwellia psychrerythraea 34H  Bacteria  normal  0.447885  n/a   
 
 
-
 
NC_011666  Msil_0061  short-chain dehydrogenase/reductase SDR  36.9 
 
 
249 aa  114  1.0000000000000001e-24  Methylocella silvestris BL2  Bacteria  n/a    normal  0.212664 
 
 
-
 
NC_011146  Gbem_3106  3-oxoacyl-(acyl-carrier-protein) reductase  36.69 
 
 
246 aa  114  1.0000000000000001e-24  Geobacter bemidjiensis Bem  Bacteria  decreased coverage  0.00000229278  n/a   
 
 
-
 
NC_008254  Meso_3434  short-chain dehydrogenase/reductase SDR  34.7 
 
 
263 aa  113  2.0000000000000002e-24  Chelativorans sp. BNC1  Bacteria  normal  0.101369  n/a   
 
 
-
 
NC_007958  RPD_3548  short-chain dehydrogenase/reductase SDR  36.03 
 
 
257 aa  113  3e-24  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_9335  short-chain dehydrogenase/reductase SDR  35.97 
 
 
250 aa  113  3e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  0.728753  normal  0.802866 
 
 
-
 
NC_014158  Tpau_1853  short-chain dehydrogenase/reductase SDR  34.8 
 
 
251 aa  113  4.0000000000000004e-24  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.635222  n/a   
 
 
-
 
NC_013037  Dfer_1528  short-chain dehydrogenase/reductase SDR  33.73 
 
 
246 aa  112  5e-24  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.606354  normal 
 
 
-
 
NC_009380  Strop_3070  short-chain dehydrogenase/reductase SDR  38.71 
 
 
254 aa  112  6e-24  Salinispora tropica CNB-440  Bacteria  normal  0.962948  normal  0.131558 
 
 
-
 
NC_010510  Mrad2831_6036  short-chain dehydrogenase/reductase SDR  36.29 
 
 
243 aa  112  7.000000000000001e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.191154 
 
 
-
 
NC_007778  RPB_1751  Short-chain dehydrogenase/reductase SDR  36.69 
 
 
257 aa  111  9e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0168825 
 
 
-
 
NC_009512  Pput_1909  short chain dehydrogenase  35.22 
 
 
255 aa  111  1.0000000000000001e-23  Pseudomonas putida F1  Bacteria  normal  0.569755  normal 
 
 
-
 
NC_007348  Reut_B5719  short chain dehydrogenase  36.55 
 
 
254 aa  111  1.0000000000000001e-23  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_5441  short-chain dehydrogenase/reductase SDR  35.83 
 
 
249 aa  111  1.0000000000000001e-23  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2119  short-chain dehydrogenase/reductase SDR  33.87 
 
 
257 aa  111  1.0000000000000001e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4745  Short-chain dehydrogenase/reductase SDR  34.26 
 
 
254 aa  111  1.0000000000000001e-23  Cupriavidus metallidurans CH34  Bacteria  normal  0.146753  normal  0.0678899 
 
 
-
 
NC_013093  Amir_2079  short chain dehydrogenase  32.27 
 
 
255 aa  111  1.0000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0494  short-chain dehydrogenase/reductase SDR  30.28 
 
 
252 aa  110  2.0000000000000002e-23  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3219  short chain dehydrogenase  37.35 
 
 
254 aa  110  2.0000000000000002e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  0.28746  normal 
 
 
-
 
NC_007511  Bcep18194_B3037  short chain dehydrogenase  36.95 
 
 
254 aa  110  2.0000000000000002e-23  Burkholderia sp. 383  Bacteria  normal  0.0519224  normal 
 
 
-
 
NC_009427  Saro_3655  short-chain dehydrogenase/reductase SDR  35.83 
 
 
269 aa  110  2.0000000000000002e-23  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0479  short-chain dehydrogenase/reductase SDR  30.28 
 
 
252 aa  110  2.0000000000000002e-23  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0470  hypothetical protein  37.01 
 
 
254 aa  110  2.0000000000000002e-23  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
CP001800  Ssol_0309  short-chain dehydrogenase/reductase SDR  34.01 
 
 
252 aa  110  3e-23  Sulfolobus solfataricus 98/2  Archaea  normal  0.387741  n/a   
 
 
-
 
NC_002947  PP_3926  short chain dehydrogenase  34.82 
 
 
255 aa  109  3e-23  Pseudomonas putida KT2440  Bacteria  normal  0.411324  normal  0.0487597 
 
 
-
 
NC_007348  Reut_B4043  Short-chain dehydrogenase/reductase SDR  33.47 
 
 
254 aa  109  3e-23  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3459  Short-chain dehydrogenase/reductase SDR  34.11 
 
 
249 aa  110  3e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010085  Nmar_0026  short-chain dehydrogenase/reductase SDR  33.33 
 
 
269 aa  110  3e-23  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_012793  GWCH70_0923  short-chain dehydrogenase/reductase SDR  30.98 
 
 
261 aa  110  3e-23  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_2798  short-chain dehydrogenase/reductase SDR  36.19 
 
 
256 aa  109  3e-23  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_012918  GM21_1156  3-oxoacyl-(acyl-carrier-protein) reductase  35.48 
 
 
246 aa  109  4.0000000000000004e-23  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008061  Bcen_5018  short chain dehydrogenase  36.95 
 
 
254 aa  109  4.0000000000000004e-23  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5842  short chain dehydrogenase  36.95 
 
 
254 aa  109  4.0000000000000004e-23  Burkholderia cenocepacia HI2424  Bacteria  normal  0.443713  normal 
 
 
-
 
NC_010515  Bcenmc03_4337  short chain dehydrogenase  36.95 
 
 
254 aa  109  4.0000000000000004e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.351229  normal  0.909494 
 
 
-
 
NC_007336  Reut_C6406  short chain dehydrogenase  35.34 
 
 
254 aa  108  7.000000000000001e-23  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2475  3-ketoacyl-(acyl-carrier-protein) reductase  35.66 
 
 
258 aa  108  8.000000000000001e-23  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00000418459  decreased coverage  0.00157029 
 
 
-
 
NC_010322  PputGB1_3560  short chain dehydrogenase  34.82 
 
 
255 aa  108  9.000000000000001e-23  Pseudomonas putida GB-1  Bacteria  normal  0.457145  normal  0.310407 
 
 
-
 
NC_010678  Rpic_4714  short chain dehydrogenase  36.14 
 
 
254 aa  108  1e-22  Ralstonia pickettii 12J  Bacteria  normal  0.0274692  decreased coverage  0.00406557 
 
 
-
 
NC_009901  Spea_2148  short-chain dehydrogenase/reductase SDR  32.93 
 
 
247 aa  107  1e-22  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1056  oxidoreductase, short chain dehydrogenase/reductase family  32.79 
 
 
254 aa  107  1e-22  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_5135  3-ketoacyl-(acyl-carrier-protein) reductase  33.99 
 
 
251 aa  108  1e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  0.971494  n/a   
 
 
-
 
NC_012857  Rpic12D_3637  short chain dehydrogenase  36.14 
 
 
254 aa  108  1e-22  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3110  short-chain dehydrogenase/reductase SDR  36.21 
 
 
246 aa  108  1e-22  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_20330  Short-chain dehydrogenase/reductase SDR  36.9 
 
 
281 aa  107  1e-22  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5079  short chain dehydrogenase  36.55 
 
 
260 aa  108  1e-22  Burkholderia ambifaria AMMD  Bacteria  normal  0.703587  normal 
 
 
-
 
NC_008531  LEUM_0145  acetoin reductase  33.07 
 
 
258 aa  107  1e-22  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  unclonable  0.0000146421  n/a   
 
 
-
 
NC_008726  Mvan_1975  3-ketoacyl-(acyl-carrier-protein) reductase  32.67 
 
 
252 aa  108  1e-22  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.636697  normal 
 
 
-
 
NC_010002  Daci_5815  short-chain dehydrogenase/reductase SDR  33.86 
 
 
270 aa  107  2e-22  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.309971 
 
 
-
 
NC_007492  Pfl01_3419  short chain dehydrogenase  34.82 
 
 
255 aa  107  2e-22  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.689572  normal 
 
 
-
 
NC_008025  Dgeo_0260  short-chain dehydrogenase/reductase SDR  34.82 
 
 
261 aa  107  2e-22  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.18961  normal 
 
 
-
 
NC_013595  Sros_6972  short chain dehydrogenase  32.82 
 
 
251 aa  107  2e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_5273  short chain dehydrogenase  36.14 
 
 
254 aa  107  2e-22  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_1006  short chain dehydrogenase  35.6 
 
 
253 aa  107  3e-22  Psychrobacter sp. PRwf-1  Bacteria  normal  hitchhiker  0.0000281072 
 
 
-
 
NC_010676  Bphyt_6655  short-chain dehydrogenase/reductase SDR  38.15 
 
 
248 aa  106  3e-22  Burkholderia phytofirmans PsJN  Bacteria  normal  0.332665  normal  0.273672 
 
 
-
 
NC_009719  Plav_0273  short-chain dehydrogenase/reductase SDR  34.54 
 
 
254 aa  106  3e-22  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4263  short-chain dehydrogenase/reductase SDR  34.26 
 
 
247 aa  106  3e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.218256  normal 
 
 
-
 
NC_011658  BCAH187_A2468  2,3-dihydroxybenzoate-2,3-dehydrogenase  30.28 
 
 
256 aa  107  3e-22  Bacillus cereus AH187  Bacteria  hitchhiker  0.00000411328  n/a   
 
 
-
 
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