Gene Franean1_3110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3110 
Symbol 
ID5671489 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp3666898 
End bp3667638 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content72% 
IMG OID641242008 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001507428 
Protein GI158314920 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGCAT CCGAGCGCGG GGTGGCGTTG GTGACCGGCG GCTCACGGGG TATCGGGCGG 
GCCATCGCCG AACGCCTCGC CGCGACGGGG AACAGCGTGA TCGTCAACTA CCGTTCGCAC
GGTGCCGCCG CCGCGGAGGT CGTCGACGCC ATCGGCCGGG CCGGCGGTGT CGCCATGGCG
GTACAGGGCG ACGTCACCGA TCAGGAACAG GTGCGTGAGC TGTTCGAGGT GGCCGAGCGG
CGGTTCGGCC GGCTGGACAC CGTGGTCAGC AACGCAGGTG TCGCCCGGTT CGCGTCCATC
GCGACGGCGA CCGACGAGGA CTTCGAGCAG AGCTTCGCCA CCAACACCCG GGCCGCCTTC
GTCGTGCTGC GGGAGGCAGC CAACCGGGTG CGTGATGGCG GCCGGGTGGT GGTGATCTCG
TCCGGGGTGA CACTCACCCG CCGCCCCGGC ACCGGGGTCT ACGGTGCGAG CAAGGCAGCG
GTCGAACACC TGGTCCGTGT GCTGGCGAAG GAACTCGGTC CCCGGCAGGT CACCGTGAAC
TGCGTGCTCC CCGGCGGCAC CCGCACCGAC GCACTCACCA CCGGTGTTCC CGCGGACGTG
TTGGAACGGA TGGCCACCGA GGCCCCGCTG GGCCGCATCG GCGAGCCGGA CGACATCGCC
GAGATCGTGG CGTTCCTCGC CTCGCCCGGC GGCCGCTGGG TTACCGGCCA GTCCATCGCC
GCCGGCGGAG GCGTGTTCTG A
 
Protein sequence
MMASERGVAL VTGGSRGIGR AIAERLAATG NSVIVNYRSH GAAAAEVVDA IGRAGGVAMA 
VQGDVTDQEQ VRELFEVAER RFGRLDTVVS NAGVARFASI ATATDEDFEQ SFATNTRAAF
VVLREAANRV RDGGRVVVIS SGVTLTRRPG TGVYGASKAA VEHLVRVLAK ELGPRQVTVN
CVLPGGTRTD ALTTGVPADV LERMATEAPL GRIGEPDDIA EIVAFLASPG GRWVTGQSIA
AGGGVF