Gene PsycPRwf_1006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsycPRwf_1006 
Symbol 
ID5205547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter sp. PRwf-1 
KingdomBacteria 
Replicon accessionNC_009524 
Strand
Start bp1196916 
End bp1197677 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content47% 
IMG OID640599227 
Productshort chain dehydrogenase 
Protein accessionYP_001279906 
Protein GI148652813 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000281072 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAGACT TATTTGATTT AACTGGAAAA GTAGCACTGG TCACCGGAGC CAGCCGCGGG 
ATAGGAGAGG CCATTGCTCG CTTATTGGCA AATTATGGTG CCGAGGTAAT TGTATCGAGC
CGTAAGCTTG AAGCCTGCCA AGCAGTCGCG GATAGTATCG TTAAGGACGG CGGCAAGGCC
TGCGCTTATG CGTGTCATGT GGGAGATATG TCTCAGATTG ATGCGATATT TGAGTATATT
AAAGACACGT TTGGTCGCAT AGATATTTTG GTCAACAATG CTGCAGCCAA TCCTTATTAT
GGTCATATTC TAGATACTGA CTTGTTGGCC TTTAATAAAA CCGTAGAGGT AAATATCCAA
GGCTACTTCT TTATGTCGAC AGCAGCTGGC AAGATGATGC GCGAGCAAGG GGGCGGGGTA
ATCTTAAATA CCGCTTCAGT AAACGGCGTT ACTCCAGGGG ATAAACAAGG CATTTACTCT
ATTACCAAAG CGGCGGTCAT AAGCATGACC AAAGCCTTTG CTAAAGAATG TGGGCCGCTC
AATATTCGAG TGAATGCTTT GCTGCCAGGC TTGACTGATA CCAAGTTTGC CTCAGCACTG
ACCAGCAATG ATAAGGTGCT TAATATGGCG CTGGCTATGA TTCCGCTTAA GCGTGTGGCA
CAGCCAGAGG AAATGGCTGG CACGGTGCTA TATTTGGTCT CTGATGCGTC AAGTTATACC
ACAGGCGCTT GTATCAATGT CGATGGTGGA CTGCTCGCTT AA
 
Protein sequence
MKDLFDLTGK VALVTGASRG IGEAIARLLA NYGAEVIVSS RKLEACQAVA DSIVKDGGKA 
CAYACHVGDM SQIDAIFEYI KDTFGRIDIL VNNAAANPYY GHILDTDLLA FNKTVEVNIQ
GYFFMSTAAG KMMREQGGGV ILNTASVNGV TPGDKQGIYS ITKAAVISMT KAFAKECGPL
NIRVNALLPG LTDTKFASAL TSNDKVLNMA LAMIPLKRVA QPEEMAGTVL YLVSDASSYT
TGACINVDGG LLA