Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_1006 |
Symbol | |
ID | 5205547 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | + |
Start bp | 1196916 |
End bp | 1197677 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640599227 |
Product | short chain dehydrogenase |
Protein accession | YP_001279906 |
Protein GI | 148652813 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000281072 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAGACT TATTTGATTT AACTGGAAAA GTAGCACTGG TCACCGGAGC CAGCCGCGGG ATAGGAGAGG CCATTGCTCG CTTATTGGCA AATTATGGTG CCGAGGTAAT TGTATCGAGC CGTAAGCTTG AAGCCTGCCA AGCAGTCGCG GATAGTATCG TTAAGGACGG CGGCAAGGCC TGCGCTTATG CGTGTCATGT GGGAGATATG TCTCAGATTG ATGCGATATT TGAGTATATT AAAGACACGT TTGGTCGCAT AGATATTTTG GTCAACAATG CTGCAGCCAA TCCTTATTAT GGTCATATTC TAGATACTGA CTTGTTGGCC TTTAATAAAA CCGTAGAGGT AAATATCCAA GGCTACTTCT TTATGTCGAC AGCAGCTGGC AAGATGATGC GCGAGCAAGG GGGCGGGGTA ATCTTAAATA CCGCTTCAGT AAACGGCGTT ACTCCAGGGG ATAAACAAGG CATTTACTCT ATTACCAAAG CGGCGGTCAT AAGCATGACC AAAGCCTTTG CTAAAGAATG TGGGCCGCTC AATATTCGAG TGAATGCTTT GCTGCCAGGC TTGACTGATA CCAAGTTTGC CTCAGCACTG ACCAGCAATG ATAAGGTGCT TAATATGGCG CTGGCTATGA TTCCGCTTAA GCGTGTGGCA CAGCCAGAGG AAATGGCTGG CACGGTGCTA TATTTGGTCT CTGATGCGTC AAGTTATACC ACAGGCGCTT GTATCAATGT CGATGGTGGA CTGCTCGCTT AA
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Protein sequence | MKDLFDLTGK VALVTGASRG IGEAIARLLA NYGAEVIVSS RKLEACQAVA DSIVKDGGKA CAYACHVGDM SQIDAIFEYI KDTFGRIDIL VNNAAANPYY GHILDTDLLA FNKTVEVNIQ GYFFMSTAAG KMMREQGGGV ILNTASVNGV TPGDKQGIYS ITKAAVISMT KAFAKECGPL NIRVNALLPG LTDTKFASAL TSNDKVLNMA LAMIPLKRVA QPEEMAGTVL YLVSDASSYT TGACINVDGG LLA
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