| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3569 |
|---|
| Symbol | |
|---|
| ID | 5541070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4660322 |
|---|
| End bp | 4661095 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640895688 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001433636 |
|---|
| Protein GI | 156743507 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCA TGCTCGAAGG AAACGTGGCG CTGATCACCG GCGCTGCCAG CGGGATCGGG
CGGGCAACAG CATTGACGCT GGCGCGCGAT GGTTCCGCAA TTGTGGTGGC TGACCTGAAT
GAGTCCGGCG GCAGCGCGAC GGTCGACGCA ATCACTGCGG CGGGTGGGTG GGCAATCTTC
GTTCAGGCGG ATGTGACCCG CGACGCAGAA CGCATGGTCG AGGCGGCAGT GCAGACGTTC
GGGCATCTCG ATATTCTGGT GAACAATGCT GGCATCTTTT ACACCGCCGA TCTGCTCGAT
GTACCCTTTG ACGAGTGGGT ACGCGCTGTC GATGTGATGT ACTTCGGCAC ATTTCGGTGC
AGCCAGGCGG CAGCGCGCCA GATGGTGCGT CAAGGGACAG GCGGGCGGAT CGTCAATATT
TCCTCAGTTA ATGGCTTCCT CGGCATGCCA CAGTCCAGCC ACTACAACTC GGCAAAAGGC
GCCATCGACC AACTCACGCG CTGTCTAGCG GTTGAACTTG CGCCGCACGG AATCCTGGTG
AATGGCATTG CGCCGGGCTT CGTCGAAACG CCCATGGCAA TCGTCAATGG CGTCAACGAA
CACGAAACGC CGGAGTTCCA GGAGTTCTAT GTGCGCCGAC GACGCATTCC CCTGGCGCGC
CCCGCATTGC CCGAAGAGAT CGCCGAAGCC GTGGCATTCC TCGTCTCGCC GCGTTGCACT
TATATCACCG GGCATACGCT CGTTGTGGAT GGCGGACTGT CGATCACGTT TTGA
|
|---|
| Protein sequence | MSGMLEGNVA LITGAASGIG RATALTLARD GSAIVVADLN ESGGSATVDA ITAAGGWAIF
VQADVTRDAE RMVEAAVQTF GHLDILVNNA GIFYTADLLD VPFDEWVRAV DVMYFGTFRC
SQAAARQMVR QGTGGRIVNI SSVNGFLGMP QSSHYNSAKG AIDQLTRCLA VELAPHGILV
NGIAPGFVET PMAIVNGVNE HETPEFQEFY VRRRRIPLAR PALPEEIAEA VAFLVSPRCT
YITGHTLVVD GGLSITF
|
|---|
| |