Gene Swit_0087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_0087 
Symbol 
ID5200416 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp83687 
End bp84427 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content69% 
IMG OID640579626 
Product3-oxoacyl-[acyl-carrier-protein] reductase 
Protein accessionYP_001260597 
Protein GI148553015 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCGATC TTTCAGGGAT GACCGCGCTG GTGACGGGCG CTTCGGGCGG CATCGGCTCG 
GCGATCGCCG GGGCGCTGGT GCGGCAGGGC GCGAAGGTCG CGCTGTCGGG CACCCGCGAG
GACGCGCTGA AGGCGGTGGC GGCGGAGATC GGCGGCGAGA CCGTGATCCT GCCGTGCAAC
CTCGGCGACG CGGAAGCGGT CGACGGCCTG ATCCCGCGCG CGGTCGAGGC GCTGGGCGGC
AAGCTCGACA TCCTCGTCAA CAATGCCGGC GTCACCCGCG ACAACCTGAT CATGCGGATG
AAGGACGAGG AGTGGGACCA GGTGATCTCG GTCAACCTGG AAGCCGCCTT CCGCCTGATC
CGCGCCGCCG CCAAGCCGAT GATGAAGGCG CGCTTCGGCC GCGTCATCAC CATCACCTCG
ATCGTCGGCA CCACCGGCAA TCCGGGGCAG GCCAACTATG CCGCGTCGAA GGCCGGCCTG
GTCGGCATGT CGAAGGCGCT GGCGCAGGAA CTGGCCAGCC GCAACATCAC CGTCAACTGC
GTCGCCCCCG GCTTCATCGC ATCGGCGATG ACCGACGTGC TGGCGGACGC GCAGAAGGAG
GCCCTGCTGG GCAAGATTCC CGCCGGCAAG CTGGGCGAGG GCGGCGACAT CGCCGCCGCC
GTCGTCTATC TGGCCAGCCA GGAGGCATCC TATGTCACCG GCCAGACGCT GCATGTGAAC
GGCGGGATGG CCATGATCTG A
 
Protein sequence
MFDLSGMTAL VTGASGGIGS AIAGALVRQG AKVALSGTRE DALKAVAAEI GGETVILPCN 
LGDAEAVDGL IPRAVEALGG KLDILVNNAG VTRDNLIMRM KDEEWDQVIS VNLEAAFRLI
RAAAKPMMKA RFGRVITITS IVGTTGNPGQ ANYAASKAGL VGMSKALAQE LASRNITVNC
VAPGFIASAM TDVLADAQKE ALLGKIPAGK LGEGGDIAAA VVYLASQEAS YVTGQTLHVN
GGMAMI