More than 300 homologs were found in PanDaTox collection
for query gene Ping_1000 on replicon NC_008709
Organism: Psychromonas ingrahamii 37



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008709  Ping_1000  short-chain dehydrogenase/reductase SDR  100 
 
 
240 aa  488  1e-137  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2712  short-chain dehydrogenase/reductase SDR  58.16 
 
 
275 aa  267  1e-70  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_3371  short-chain dehydrogenase/reductase SDR  53.39 
 
 
239 aa  255  4e-67  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3209  short-chain dehydrogenase/reductase SDR  55.7 
 
 
266 aa  254  7e-67  Shewanella baltica OS195  Bacteria  normal  normal  0.857449 
 
 
-
 
NC_009052  Sbal_3052  short-chain dehydrogenase/reductase SDR  55.7 
 
 
266 aa  254  8e-67  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0813  short chain dehydrogenase/reductase family oxidoreductase  54.1 
 
 
253 aa  254  8e-67  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3066  short-chain dehydrogenase/reductase SDR  55.7 
 
 
266 aa  253  3e-66  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1481  short-chain dehydrogenase/reductase SDR  52.52 
 
 
240 aa  251  5.000000000000001e-66  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1311  short-chain dehydrogenase/reductase SDR  55.27 
 
 
266 aa  251  9.000000000000001e-66  Shewanella baltica OS223  Bacteria  normal  normal  0.978372 
 
 
-
 
NC_004347  SO_3382  short chain dehydrogenase/reductase family oxidoreductase  55.27 
 
 
266 aa  248  5e-65  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_1238  short-chain dehydrogenase/reductase SDR  54.85 
 
 
266 aa  247  1e-64  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2775  short-chain dehydrogenase/reductase SDR  50.84 
 
 
238 aa  246  2e-64  Shewanella woodyi ATCC 51908  Bacteria  normal  0.88847  normal  0.739494 
 
 
-
 
NC_008321  Shewmr4_1167  short-chain dehydrogenase/reductase SDR  54.01 
 
 
266 aa  243  9.999999999999999e-64  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3034  short-chain dehydrogenase/reductase SDR  52.94 
 
 
249 aa  239  4e-62  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.377805  n/a   
 
 
-
 
NC_008577  Shewana3_1168  short-chain dehydrogenase/reductase SDR  53.59 
 
 
266 aa  239  4e-62  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1382  short chain dehydrogenase/reductase family oxidoreductase  51.26 
 
 
251 aa  236  2e-61  Colwellia psychrerythraea 34H  Bacteria  normal  0.0851667  n/a   
 
 
-
 
NC_011138  MADE_01434  Short chain dehydrogenase family protein  46.02 
 
 
239 aa  219  1.9999999999999999e-56  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1329  short-chain dehydrogenase/reductase SDR  43.93 
 
 
238 aa  214  9.999999999999999e-55  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.371699  n/a   
 
 
-
 
NC_012917  PC1_2097  short-chain dehydrogenase/reductase SDR  45.42 
 
 
238 aa  211  7.999999999999999e-54  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.434652  n/a   
 
 
-
 
NC_009457  VC0395_A0637  short chain dehydrogenase  48.26 
 
 
241 aa  210  1e-53  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000368636  n/a   
 
 
-
 
NC_013456  VEA_003864  oxidoreductase short-chain dehydrogenase/reductase family  47.11 
 
 
241 aa  209  3e-53  Vibrio sp. Ex25  Bacteria  normal  0.013707  n/a   
 
 
-
 
NC_009783  VIBHAR_01815  short chain dehydrogenase  46.49 
 
 
241 aa  204  1e-51  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007969  Pcryo_0727  short-chain dehydrogenase/reductase SDR  44.17 
 
 
245 aa  201  9.999999999999999e-51  Psychrobacter cryohalolentis K5  Bacteria  decreased coverage  0.00978147  normal 
 
 
-
 
NC_008740  Maqu_1484  short-chain dehydrogenase/reductase SDR  43.15 
 
 
260 aa  191  9e-48  Marinobacter aquaeolei VT8  Bacteria  normal  0.591298  n/a   
 
 
-
 
NC_007963  Csal_0463  short-chain dehydrogenase/reductase SDR  40.08 
 
 
264 aa  185  5e-46  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1175  short-chain dehydrogenase/reductase SDR  41.53 
 
 
254 aa  184  8e-46  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3172  short-chain dehydrogenase/reductase SDR  42.74 
 
 
250 aa  184  1.0000000000000001e-45  Pseudomonas putida W619  Bacteria  normal  0.0471693  normal 
 
 
-
 
NC_007005  Psyr_0959  Short-chain dehydrogenase/reductase SDR  41.46 
 
 
262 aa  182  5.0000000000000004e-45  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  41.08 
 
 
239 aa  181  7e-45  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1069  short-chain dehydrogenase/reductase SDR  42.04 
 
 
251 aa  180  2e-44  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1119  oxidoreductase, short chain dehydrogenase/reductase family  43.9 
 
 
262 aa  179  2.9999999999999997e-44  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1178  short-chain dehydrogenase/reductase SDR  39.17 
 
 
239 aa  176  2e-43  Dickeya zeae Ech1591  Bacteria  normal  0.300792  n/a   
 
 
-
 
NC_007492  Pfl01_4738  Short-chain dehydrogenase/reductase SDR  42.68 
 
 
260 aa  175  5e-43  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.9226  normal  0.284155 
 
 
-
 
NC_002947  PP_2737  short chain dehydrogenase/reductase family oxidoreductase  41.22 
 
 
250 aa  165  5e-40  Pseudomonas putida KT2440  Bacteria  normal  0.420132  normal 
 
 
-
 
NC_009512  Pput_3016  short-chain dehydrogenase/reductase SDR  40.82 
 
 
250 aa  163  2.0000000000000002e-39  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2099  short-chain dehydrogenase/reductase SDR  41.94 
 
 
250 aa  154  1e-36  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4073  short-chain dehydrogenase/reductase SDR  39.06 
 
 
252 aa  149  5e-35  Marinomonas sp. MWYL1  Bacteria  normal  0.576341  normal 
 
 
-
 
NC_007912  Sde_2469  TonB-dependent receptor  37.05 
 
 
265 aa  145  6e-34  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0085  gluconate 5-dehydrogenase  38.89 
 
 
256 aa  144  9e-34  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0468  short-chain dehydrogenase/reductase SDR  36.63 
 
 
257 aa  142  5e-33  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  36.78 
 
 
249 aa  141  9e-33  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_007643  Rru_A0729  Short-chain dehydrogenase/reductase SDR  36.97 
 
 
259 aa  134  9.999999999999999e-31  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.503076  n/a   
 
 
-
 
NC_009484  Acry_1727  short-chain dehydrogenase/reductase SDR  35.8 
 
 
265 aa  134  1.9999999999999998e-30  Acidiphilium cryptum JF-5  Bacteria  normal  0.218017  n/a   
 
 
-
 
NC_008781  Pnap_1455  short-chain dehydrogenase/reductase SDR  35.92 
 
 
260 aa  129  3e-29  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.271159  normal 
 
 
-
 
NC_011369  Rleg2_1440  short-chain dehydrogenase/reductase SDR  35.1 
 
 
277 aa  129  4.0000000000000003e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.313918 
 
 
-
 
NC_012850  Rleg_1619  short-chain dehydrogenase/reductase SDR  35.37 
 
 
277 aa  127  2.0000000000000002e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.44916 
 
 
-
 
NC_011662  Tmz1t_1059  short-chain dehydrogenase/reductase SDR  31.75 
 
 
300 aa  125  8.000000000000001e-28  Thauera sp. MZ1T  Bacteria  normal  0.261261  n/a   
 
 
-
 
NC_009379  Pnuc_1974  short-chain dehydrogenase/reductase SDR  33.6 
 
 
258 aa  125  8.000000000000001e-28  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2964  short-chain dehydrogenase/reductase SDR  33.33 
 
 
260 aa  124  1e-27  Acidovorax sp. JS42  Bacteria  normal  normal  0.166977 
 
 
-
 
NC_011992  Dtpsy_2391  short-chain dehydrogenase/reductase SDR  33.33 
 
 
260 aa  124  1e-27  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1362  short-chain dehydrogenase/reductase SDR  33.47 
 
 
282 aa  123  2e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.390824  normal 
 
 
-
 
NC_007575  Suden_1903  Short-chain dehydrogenase/reductase SDR  32.38 
 
 
242 aa  122  3e-27  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5880  short-chain dehydrogenase/reductase SDR  36.4 
 
 
263 aa  121  8e-27  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.195504 
 
 
-
 
NC_010581  Bind_1222  short-chain dehydrogenase/reductase SDR  32.92 
 
 
258 aa  121  9.999999999999999e-27  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.461582  normal 
 
 
-
 
NC_013422  Hneap_1889  short-chain dehydrogenase/reductase SDR  30.2 
 
 
256 aa  116  3e-25  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0230  hypothetical protein  32.23 
 
 
261 aa  115  7.999999999999999e-25  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.599536 
 
 
-
 
NC_011206  Lferr_2904  short chain dehydrogenase  32 
 
 
261 aa  112  5e-24  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  hitchhiker  0.000166666  decreased coverage  0.000436169 
 
 
-
 
NC_011761  AFE_3307  short chain dehydrogenase  32 
 
 
261 aa  112  5e-24  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0864591  n/a   
 
 
-
 
NC_007493  RSP_1087  short-chain dehydrogenase/reductase family protein  30.77 
 
 
245 aa  110  2.0000000000000002e-23  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.3765  n/a   
 
 
-
 
NC_009049  Rsph17029_2750  short-chain dehydrogenase/reductase SDR  30.77 
 
 
245 aa  110  2.0000000000000002e-23  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0379321  normal 
 
 
-
 
NC_010814  Glov_1537  short-chain dehydrogenase/reductase SDR  32.93 
 
 
255 aa  109  4.0000000000000004e-23  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0496  Short-chain dehydrogenase/reductase SDR  34.3 
 
 
251 aa  109  4.0000000000000004e-23  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.661007 
 
 
-
 
NC_011666  Msil_0375  short-chain dehydrogenase/reductase SDR  33.18 
 
 
254 aa  108  7.000000000000001e-23  Methylocella silvestris BL2  Bacteria  n/a    normal  0.187579 
 
 
-
 
NC_014230  CA2559_04715  Short-chain dehydrogenase/reductase SDR  36.17 
 
 
249 aa  107  1e-22  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.863639  n/a   
 
 
-
 
NC_008044  TM1040_0408  short-chain dehydrogenase/reductase SDR  32.14 
 
 
240 aa  108  1e-22  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0371  short-chain dehydrogenase/reductase SDR  29.66 
 
 
243 aa  107  2e-22  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2941  short-chain dehydrogenase/reductase SDR  29.91 
 
 
245 aa  105  5e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.19024  normal  0.201158 
 
 
-
 
NC_007336  Reut_C6102  Short-chain dehydrogenase/reductase SDR  34.48 
 
 
264 aa  105  6e-22  Ralstonia eutropha JMP134  Bacteria  normal  0.0605001  n/a   
 
 
-
 
NC_010508  Bcenmc03_0749  short-chain dehydrogenase/reductase SDR  31.38 
 
 
261 aa  103  2e-21  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_4017  short-chain dehydrogenase/reductase SDR  30.13 
 
 
245 aa  103  2e-21  Jannaschia sp. CCS1  Bacteria  normal  0.980517  normal 
 
 
-
 
NC_012880  Dd703_1893  3-hydroxy acid dehydrogenase  35.39 
 
 
249 aa  102  4e-21  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0427  Short-chain dehydrogenase/reductase SDR  34.02 
 
 
256 aa  101  1e-20  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0342  short-chain dehydrogenase/reductase SDR  33.16 
 
 
251 aa  101  1e-20  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.0363598  n/a   
 
 
-
 
NC_007510  Bcep18194_A3871  Short-chain dehydrogenase/reductase SDR  30.74 
 
 
263 aa  100  2e-20  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_3014  oxidoreductase, short-chain dehydrogenase/reductase family  33.47 
 
 
257 aa  100  3e-20  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.698047  n/a   
 
 
-
 
NC_011992  Dtpsy_3487  short chain dehydrogenase  30.29 
 
 
270 aa  99.4  4e-20  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_4129  short chain dehydrogenase  30.54 
 
 
270 aa  99  6e-20  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_2168  short chain dehydrogenase/reductase family oxidoreductase  28.87 
 
 
262 aa  98.2  1e-19  Burkholderia mallei NCTC 10247  Bacteria  normal  0.408948  n/a   
 
 
-
 
NC_006348  BMA2291  short chain dehydrogenase/reductase family oxidoreductase  28.87 
 
 
262 aa  98.2  1e-19  Burkholderia mallei ATCC 23344  Bacteria  normal  0.448302  n/a   
 
 
-
 
NC_009076  BURPS1106A_3273  short chain dehydrogenase/reductase family oxidoreductase  28.87 
 
 
262 aa  98.2  1e-19  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3288  short chain dehydrogenase/reductase family oxidoreductase  28.87 
 
 
262 aa  98.2  1e-19  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3237  short chain dehydrogenase/reductase family oxidoreductase  29.29 
 
 
262 aa  97.8  1e-19  Burkholderia pseudomallei 668  Bacteria  normal  0.85457  n/a   
 
 
-
 
NC_008836  BMA10229_A1063  short chain dehydrogenase/reductase family oxidoreductase  28.87 
 
 
262 aa  98.2  1e-19  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0537  short chain dehydrogenase/reductase family oxidoreductase  28.87 
 
 
262 aa  98.2  1e-19  Burkholderia mallei SAVP1  Bacteria  normal  0.618923  n/a   
 
 
-
 
NC_010505  Mrad2831_0946  short-chain dehydrogenase/reductase SDR  31.97 
 
 
255 aa  96.3  4e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.841301 
 
 
-
 
NC_012912  Dd1591_2130  3-hydroxy acid dehydrogenase  34.27 
 
 
249 aa  95.5  7e-19  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1220  short-chain dehydrogenase/reductase SDR  35.56 
 
 
267 aa  95.1  8e-19  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0396452 
 
 
-
 
NC_013421  Pecwa_2351  3-hydroxy acid dehydrogenase  34.27 
 
 
249 aa  93.6  3e-18  Pectobacterium wasabiae WPP163  Bacteria  normal  0.11526  n/a   
 
 
-
 
NC_011894  Mnod_1405  short-chain dehydrogenase/reductase SDR  32.22 
 
 
256 aa  93.2  3e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.565969  n/a   
 
 
-
 
NC_007519  Dde_1841  short chain dehydrogenase/reductase family oxidoreductase  31.91 
 
 
250 aa  92.8  4e-18  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00165114  n/a   
 
 
-
 
NC_007614  Nmul_A2453  short chain dehydrogenase  30.08 
 
 
261 aa  92.8  4e-18  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0713  short-chain dehydrogenase/reductase SDR  34.57 
 
 
251 aa  92.8  5e-18  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2952  short-chain dehydrogenase/reductase SDR  29.52 
 
 
253 aa  92.4  6e-18  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4205  short chain dehydrogenase  34.05 
 
 
249 aa  92  7e-18  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009715  CCV52592_1418  short chain dehydrogenase/reductase family oxidoreductase  33.7 
 
 
248 aa  91.3  1e-17  Campylobacter curvus 525.92  Bacteria  hitchhiker  0.0000653973  n/a   
 
 
-
 
CP001637  EcDH1_2106  short-chain dehydrogenase/reductase SDR  32.02 
 
 
248 aa  90.1  2e-17  Escherichia coli DH1  Bacteria  hitchhiker  0.000000000000149507  n/a   
 
 
-
 
NC_010468  EcolC_2119  3-hydroxy acid dehydrogenase  32.02 
 
 
248 aa  90.5  2e-17  Escherichia coli ATCC 8739  Bacteria  unclonable  0.0000000142813  normal 
 
 
-
 
NC_007492  Pfl01_2715  Short-chain dehydrogenase/reductase SDR  30.41 
 
 
254 aa  90.9  2e-17  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.479047 
 
 
-
 
NC_012791  Vapar_5291  short chain dehydrogenase  28.03 
 
 
260 aa  90.5  2e-17  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1748  3-hydroxy acid dehydrogenase  32.02 
 
 
248 aa  90.1  2e-17  Escherichia coli E24377A  Bacteria  hitchhiker  0.000000000124318  n/a   
 
 
-
 
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