More than 300 homologs were found in PanDaTox collection
for query gene Acry_2920 on replicon NC_009484
Organism: Acidiphilium cryptum JF-5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009484  Acry_2920  GntR family transcriptional regulator  100 
 
 
245 aa  486  1e-136  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0812  phophonate C-P lyase system transcriptional regulator PhnF, GntR family  44.67 
 
 
240 aa  202  5e-51  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3327  GntR family transcriptional regulator  41.15 
 
 
251 aa  181  8.000000000000001e-45  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1934  transcriptional regulator, GntR family  39.92 
 
 
250 aa  176  4e-43  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.127514  normal 
 
 
-
 
NC_011761  AFE_2287  transcriptional regulator, GntR family  39.92 
 
 
250 aa  176  4e-43  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3704  GntR family transcriptional regulator  40.52 
 
 
240 aa  169  4e-41  Ruegeria sp. TM1040  Bacteria  normal  normal  0.317205 
 
 
-
 
NC_007348  Reut_B4185  GntR family transcriptional regulator  38.78 
 
 
249 aa  165  8e-40  Ralstonia eutropha JMP134  Bacteria  normal  0.188072  n/a   
 
 
-
 
NC_010623  Bphy_3772  GntR family transcriptional regulator  37.19 
 
 
252 aa  163  3e-39  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1317  GntR family transcriptional regulator  42.92 
 
 
271 aa  162  4.0000000000000004e-39  Xanthobacter autotrophicus Py2  Bacteria  normal  0.193011  normal 
 
 
-
 
NC_007973  Rmet_0767  GntR family transcriptional regulator  37.4 
 
 
251 aa  161  8.000000000000001e-39  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008836  BMA10229_A1176  phosphonates metabolism transcriptional regulator PhnF  38.02 
 
 
251 aa  160  1e-38  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3313  phosphonates metabolism transcriptional regulator PhnF  38.02 
 
 
258 aa  160  1e-38  Burkholderia pseudomallei 668  Bacteria  normal  0.906593  n/a   
 
 
-
 
NC_006348  BMA2399  GntR family transcriptional regulator  38.02 
 
 
258 aa  161  1e-38  Burkholderia mallei ATCC 23344  Bacteria  normal  0.720862  n/a   
 
 
-
 
NC_009076  BURPS1106A_3347  phosphonates metabolism transcriptional regulator PhnF  38.02 
 
 
258 aa  160  1e-38  Burkholderia pseudomallei 1106a  Bacteria  normal  0.546924  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0315  phosphonates metabolism transcriptional regulator PhnF  38.02 
 
 
258 aa  161  1e-38  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2585  phosphonates metabolism transcriptional regulator PhnF  38.02 
 
 
258 aa  161  1e-38  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3357  phosphonates metabolism transcriptional regulator PhnF  38.02 
 
 
272 aa  160  2e-38  Burkholderia pseudomallei 1710b  Bacteria  normal  0.568535  n/a   
 
 
-
 
NC_007952  Bxe_B2178  GntR family transcriptional regulator  36.36 
 
 
252 aa  156  4e-37  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0464969 
 
 
-
 
NC_010676  Bphyt_5939  transcriptional regulator, GntR family  36.36 
 
 
252 aa  154  1e-36  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3858  GntR family transcriptional regulator  43.1 
 
 
247 aa  152  5e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.21556  normal  0.95264 
 
 
-
 
NC_007908  Rfer_0146  GntR family transcriptional regulator  36.13 
 
 
252 aa  151  8.999999999999999e-36  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2925  phophonate C-P lyase system transcriptional regulator PhnF, GntR family  37.71 
 
 
254 aa  150  1e-35  Acidovorax ebreus TPSY  Bacteria  normal  0.608421  n/a   
 
 
-
 
NC_009667  Oant_2197  GntR family transcriptional regulator  35.8 
 
 
256 aa  148  7e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.6507  n/a   
 
 
-
 
NC_007802  Jann_2856  GntR family transcriptional regulator  39.74 
 
 
238 aa  144  1e-33  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4206  phophonate C-P lyase system transcriptional regulator PhnF, GntR family  42.15 
 
 
249 aa  141  8e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_6099  phophonate C-P lyase system transcriptional regulator PhnF, GntR family  35.56 
 
 
260 aa  137  1e-31  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2915  GntR family transcriptional regulator  41.74 
 
 
249 aa  137  2e-31  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0266  phosphonates metabolism transcriptional regulator PhnF  37.45 
 
 
245 aa  135  8e-31  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4783  phosphonates metabolism transcriptional regulator PhnF  36.4 
 
 
243 aa  131  1.0000000000000001e-29  Paracoccus denitrificans PD1222  Bacteria  normal  0.133972  normal  0.113518 
 
 
-
 
NC_011369  Rleg2_4125  phophonate C-P lyase system transcriptional regulator PhnF, GntR family  35.25 
 
 
245 aa  127  2.0000000000000002e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4236  GntR family transcriptional regulator  36.78 
 
 
243 aa  126  2.0000000000000002e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.265926  normal 
 
 
-
 
NC_004310  BR1100  GntR family transcriptional regulator  33.74 
 
 
253 aa  125  7e-28  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1061  phosphonate metabolism transcriptional regulator PhnF  33.74 
 
 
253 aa  125  7e-28  Brucella ovis ATCC 25840  Bacteria  normal  0.488956  n/a   
 
 
-
 
NC_007925  RPC_1287  GntR family transcriptional regulator  33.88 
 
 
242 aa  123  2e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2301  GntR family transcriptional regulator  34.84 
 
 
242 aa  122  6e-27  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4439  phophonate C-P lyase system transcriptional regulator PhnF, GntR family  36.63 
 
 
245 aa  122  6e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.879894 
 
 
-
 
NC_011004  Rpal_0763  transcriptional regulator, GntR family  37.24 
 
 
242 aa  120  1.9999999999999998e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.747826  n/a   
 
 
-
 
NC_008826  Mpe_B0456  GntR family transcriptional regulator  35.37 
 
 
238 aa  119  3e-26  Methylibium petroleiphilum PM1  Bacteria  normal  0.598558  normal 
 
 
-
 
NC_008826  Mpe_B0420  GntR family transcriptional regulator  35.37 
 
 
238 aa  119  3e-26  Methylibium petroleiphilum PM1  Bacteria  normal  0.330179  normal 
 
 
-
 
NC_009485  BBta_5849  GntR family transcriptional regulator  36.71 
 
 
241 aa  118  9e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.499759  normal  0.557144 
 
 
-
 
NC_008740  Maqu_0213  phosphonates metabolism transcriptional regulator PhnF  33.2 
 
 
244 aa  118  9.999999999999999e-26  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008739  Maqu_4033  phosphonates metabolism transcriptional regulator PhnF  33.2 
 
 
244 aa  118  9.999999999999999e-26  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4088  GntR family transcriptional regulator  35.8 
 
 
242 aa  114  2.0000000000000002e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.199409  normal  0.0399057 
 
 
-
 
NC_007520  Tcr_2078  GntR family transcriptional regulator  32.63 
 
 
243 aa  105  6e-22  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3824  GntR family transcriptional regulator  34.03 
 
 
242 aa  104  1e-21  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.321657  normal 
 
 
-
 
NC_008709  Ping_3696  transcriptional regulator, GntR family protein  28.81 
 
 
240 aa  93.6  2e-18  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2695  phosphonate metabolism transcriptional regulator PhnF  30.2 
 
 
239 aa  92.4  6e-18  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0522  phosphonate metabolism transcriptional regulator PhnF  31.49 
 
 
242 aa  89.4  5e-17  Serratia proteamaculans 568  Bacteria  normal  0.498003  normal 
 
 
-
 
NC_013530  Xcel_2122  transcriptional regulator, GntR family  32.05 
 
 
244 aa  88.6  7e-17  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2575  phophonate C-P lyase system transcriptional regulator PhnF, GntR family  28.69 
 
 
243 aa  87.4  2e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3693  phosphonate metabolism transcriptional regulator PhnF  30.34 
 
 
241 aa  87  3e-16  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.189097  n/a   
 
 
-
 
NC_009708  YpsIP31758_3559  phosphonate metabolism transcriptional regulator PhnF  29.49 
 
 
241 aa  85.5  6e-16  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A4032  phosphonate metabolism transcriptional regulator PhnF  29.91 
 
 
241 aa  85.5  7e-16  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2666  transcriptional regulator, GntR family  29.33 
 
 
237 aa  84.3  0.000000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008530  LGAS_0114  transcriptional regulator  29.02 
 
 
239 aa  81.6  0.000000000000009  Lactobacillus gasseri ATCC 33323  Bacteria  normal  hitchhiker  1.19312e-17 
 
 
-
 
NC_012917  PC1_0886  phosphonate metabolism transcriptional regulator PhnF  27.97 
 
 
238 aa  80.9  0.00000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1307  phosphonate metabolism transcriptional regulator PhnF  29.58 
 
 
239 aa  79  0.00000000000007  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00330813  n/a   
 
 
-
 
NC_009513  Lreu_0283  GntR family transcriptional regulator  26.16 
 
 
233 aa  77.8  0.0000000000001  Lactobacillus reuteri DSM 20016  Bacteria  normal  0.696412  n/a   
 
 
-
 
NC_009012  Cthe_0740  GntR family transcriptional regulator  24.5 
 
 
245 aa  77  0.0000000000002  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000000268297  n/a   
 
 
-
 
NC_010498  EcSMS35_4568  phosphonate metabolism transcriptional regulator PhnF  29.24 
 
 
241 aa  77  0.0000000000002  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0306  phosphonate metabolism transcriptional regulator PhnF  28.81 
 
 
241 aa  76.6  0.0000000000003  Enterobacter sp. 638  Bacteria  normal  0.275672  normal  0.118863 
 
 
-
 
NC_009800  EcHS_A4343  phosphonate metabolism transcriptional regulator PhnF  28.81 
 
 
241 aa  77  0.0000000000003  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1647  GntR family transcriptional regulator  28.75 
 
 
251 aa  75.9  0.0000000000005  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.771403 
 
 
-
 
NC_008463  PA14_20350  putative transcriptional regulator  32.66 
 
 
240 aa  76.3  0.0000000000005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.238526  normal  0.704224 
 
 
-
 
NC_009253  Dred_2751  UbiC transcription regulator-associated domain-containing protein  25.65 
 
 
239 aa  75.9  0.0000000000005  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3924  phosphonate metabolism transcriptional regulator PhnF  28.81 
 
 
241 aa  75.9  0.0000000000006  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03974  predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation  28.81 
 
 
241 aa  75.9  0.0000000000006  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3889  phophonate C-P lyase system transcriptional regulator PhnF, GntR family  28.81 
 
 
241 aa  75.9  0.0000000000006  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4656  phosphonate metabolism transcriptional regulator PhnF  28.81 
 
 
241 aa  75.9  0.0000000000006  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03934  hypothetical protein  28.81 
 
 
241 aa  75.9  0.0000000000006  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5615  phosphonate metabolism transcriptional regulator PhnF  28.81 
 
 
241 aa  75.5  0.0000000000008  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1748  phosphonates metabolism transcriptional regulator PhnF  31.56 
 
 
240 aa  74.7  0.000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.22448  n/a   
 
 
-
 
NC_013757  Gobs_2741  transcriptional regulator, GntR family  28.46 
 
 
242 aa  74.3  0.000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  decreased coverage  0.0041351  n/a   
 
 
-
 
NC_008531  LEUM_0426  GntR family transcriptional regulator  26.81 
 
 
232 aa  74.3  0.000000000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_1962  GntR family transcriptional regulator  24.78 
 
 
242 aa  73.9  0.000000000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  hitchhiker  0.00453299  n/a   
 
 
-
 
NC_012669  Bcav_0433  transcriptional regulator, GntR family  33.63 
 
 
238 aa  73.6  0.000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0535711  normal 
 
 
-
 
NC_008463  PA14_34880  GntR family transcriptional regulator  28.99 
 
 
249 aa  73.2  0.000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000127927  normal  0.954426 
 
 
-
 
NC_008530  LGAS_1535  transcriptional regulator  23.73 
 
 
233 aa  73.2  0.000000000004  Lactobacillus gasseri ATCC 33323  Bacteria  normal  0.178039  normal  0.468584 
 
 
-
 
NC_008578  Acel_1804  GntR family transcriptional regulator  27.47 
 
 
246 aa  72.4  0.000000000006  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.582068 
 
 
-
 
NC_004311  BRA1179  GntR family transcriptional regulator  30.34 
 
 
244 aa  72  0.000000000008  Brucella suis 1330  Bacteria  normal  0.330166  n/a   
 
 
-
 
NC_009253  Dred_2758  UbiC transcription regulator-associated domain-containing protein  26.09 
 
 
240 aa  72  0.000000000008  Desulfotomaculum reducens MI-1  Bacteria  normal  0.37249  n/a   
 
 
-
 
NC_008262  CPR_2646  GntR family transcriptional regulator  26.83 
 
 
241 aa  71.6  0.00000000001  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_0913  transcription regulator GntR family  23.31 
 
 
232 aa  71.6  0.00000000001  Streptococcus thermophilus LMD-9  Bacteria  normal  0.0175976  n/a   
 
 
-
 
NC_013235  Namu_3318  transcriptional regulator, GntR family  25.2 
 
 
252 aa  70.9  0.00000000002  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000065866  hitchhiker  0.00380995 
 
 
-
 
NC_013501  Rmar_2215  transcriptional regulator, GntR family  30.45 
 
 
270 aa  71.2  0.00000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.587929  n/a   
 
 
-
 
NC_007509  Bcep18194_C7245  GntR family transcriptional regulator  30.36 
 
 
286 aa  70.9  0.00000000002  Burkholderia sp. 383  Bacteria  normal  0.375803  normal 
 
 
-
 
NC_007644  Moth_1312  GntR family transcriptional regulator  28.45 
 
 
243 aa  70.9  0.00000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.483973 
 
 
-
 
NC_008010  Dgeo_2760  GntR family transcriptional regulator  30.32 
 
 
231 aa  70.5  0.00000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0304853  n/a   
 
 
-
 
NC_008261  CPF_2963  GntR family transcriptional regulator  26.22 
 
 
241 aa  70.5  0.00000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3001  transcriptional regulator, GntR family  33.9 
 
 
236 aa  70.9  0.00000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  decreased coverage  0.00183379 
 
 
-
 
NC_013517  Sterm_3410  transcriptional regulator, GntR family  24.4 
 
 
245 aa  70.9  0.00000000002  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00000405117  n/a   
 
 
-
 
NC_013159  Svir_34690  transcriptional regulator, GntR family  29.3 
 
 
244 aa  71.2  0.00000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0368161  normal 
 
 
-
 
NC_013411  GYMC61_0406  transcriptional regulator, GntR family  24.89 
 
 
243 aa  70.1  0.00000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_1175  transcriptional regulator, GntR family  24.08 
 
 
243 aa  70.1  0.00000000003  Geobacillus sp. WCH70  Bacteria  normal  0.336656  n/a   
 
 
-
 
NC_004578  PSPTO_2558  transcriptional regulator PhnF  30.21 
 
 
239 aa  70.1  0.00000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.153571  n/a   
 
 
-
 
NC_013172  Bfae_00770  transcriptional regulator, GntR family  27.64 
 
 
255 aa  70.1  0.00000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2509  GntR family transcriptional regulator  32.07 
 
 
257 aa  69.7  0.00000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.31596  n/a   
 
 
-
 
NC_009620  Smed_4392  GntR family transcriptional regulator  28.77 
 
 
257 aa  68.6  0.00000000008  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.599846 
 
 
-
 
NC_013093  Amir_5259  transcriptional regulator, GntR family  29.61 
 
 
254 aa  68.2  0.0000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_2009  UbiC transcription regulator-associated domain-containing protein  27.75 
 
 
246 aa  68.2  0.0000000001  Salinispora tropica CNB-440  Bacteria  normal  0.378179  normal  0.0458399 
 
 
-
 
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