| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6099 |
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| Symbol | |
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| ID | 7975545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 815518 |
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| End bp | 816300 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644796655 |
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| Product | phophonate C-P lyase system transcriptional regulator PhnF, GntR family |
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| Protein accession | YP_002947929 |
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| Protein GI | 239820744 |
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| COG category | [K] Transcription |
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| COG ID | [COG2188] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02325] phosphonates metabolism transcriptional regulator PhnF |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGCA CGACGACGAC CCCTGCCTCC GCGCTGGCTC CGCGCTCCTC CTCCACCACC
ACCGAACGCA CCGCACGCGA CAGCTTCTGG ATCCGCATTG CGGCCGACCT GGCCGAGGCC
ATTGCGCGCG GCGTGTATTC GCCGGGGCAG CGCCTGCCCT CCGAGCACGC GCTGGCCGAG
CAGTTCGGCG TGAACCGCCA CACCATCCGC CGCTCGCTCG CCAACCTCTG CAGCCAGGGG
CTGCTGCGCG TGACGCAGGG CAGCGGCACC TATGTGGAAG AGTTCGCGGT CGACCTCGCG
CTGGCCAAGC GCCCGCGCTT CCAGCGCAGC ATGGCGCTGG CGGGGCTGCG CGGCGCGTTG
CGCGTGACCG GCGCGAGCAC CGTGCGCGCC ACCGCGGCGC AGGCGCGTTC GCTCGCGGTG
CCGGCGCGCA GTTCGCTGCT GTGCCTGCAG GTGATCGGCG AAGCCGAGGG CCAGCCGCTG
CATTGCAGCG AACGCTTCTT TCCGCTGCCG CGCTTCGCGG GACTCGAAGC CGTGGTGCGC
GAGACCGGCT CCATCACCGC CGGCTTCGAG GCCCACGGCG TGGCCGACTA CACGCGCCAC
CACAGCCGCA TCACGGCGCA GATGCCCGAG GCCGCGATTG CCGCGCAGCT GCGCCAGCCG
GTCAGCCGGC CGGTGCTGTT CGTGGAGAGC GTGAACGTCG ACACCGCGGG CGTGCCGATC
GAATACGCGA GGGCCTGGTT CGCAGGCGAC CGCACCTCGC TGACGGTGGC GCACGATGAC
TGA
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| Protein sequence | MTSTTTTPAS ALAPRSSSTT TERTARDSFW IRIAADLAEA IARGVYSPGQ RLPSEHALAE
QFGVNRHTIR RSLANLCSQG LLRVTQGSGT YVEEFAVDLA LAKRPRFQRS MALAGLRGAL
RVTGASTVRA TAAQARSLAV PARSSLLCLQ VIGEAEGQPL HCSERFFPLP RFAGLEAVVR
ETGSITAGFE AHGVADYTRH HSRITAQMPE AAIAAQLRQP VSRPVLFVES VNVDTAGVPI
EYARAWFAGD RTSLTVAHDD
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