| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2856 |
|---|
| Symbol | |
|---|
| ID | 3935322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 2875929 |
|---|
| End bp | 2876645 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637905223 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_510798 |
|---|
| Protein GI | 89055347 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2188] Transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR02325] phosphonates metabolism transcriptional regulator PhnF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGGACGCA CGGCACTGTG GACGTCGATT CTTGAGACCT TGGCCGAGGA AGTCTCCAAC
GGCCATTACG GCCCCGGGGA TCGCCTGCCC ACCGAGGCAC AATTGGCCAA GCGCTTCGGC
GTGAACCGCC ACACCGTGCG GCGGGCGCTT GGTGGTCTGG CAGAGCGGGA TATTGTTTTC
GCGCGGCGGG GCGCTGGCGT GTTCGTGCGC CACGTCCCCA CCCCCTACCC GATTGGTCGC
CGCGTGCGCT TTCATCAAAA CCTGGTGGCG GCCAACCGGG TGCCGGAACG CCGGACTCTC
CACCTGGAGA CGCGGGCCGC CGATATGGAA GAGGCCGACG CGTTGGCCCT CTCACACACC
GCGCAGGTCC ACGTATATGA GGGGGTCAGC CTGTCAGACG GCGTGCCGCT GGCAACCTTC
ACATCCATCT TTCCGGCAGA GCGGTTCCCG GATTTGCCAA AGGTCCTGGA GGAGGTGAAC
TCTGTCACAA AGACCTTCGC GGCGTTCGAG GTTGAGGATT ACACACGGGC GCGCACCGAC
GTCACGGCAC AGATCGCCTC CAGCACACAG GCCGCCCTCC TTGCCCTGCG TCCCGGCGAC
GCGCTTCTCG GCACAATCAG CGTCAATGTA GACGGAGCGG GCACACCCAT CGAATATGGA
CGCACATGGT TTGCGGCCGA CCGGGTTACG CTGACGCTGT CAGGGTACGA GAGCTGA
|
|---|
| Protein sequence | MGRTALWTSI LETLAEEVSN GHYGPGDRLP TEAQLAKRFG VNRHTVRRAL GGLAERDIVF
ARRGAGVFVR HVPTPYPIGR RVRFHQNLVA ANRVPERRTL HLETRAADME EADALALSHT
AQVHVYEGVS LSDGVPLATF TSIFPAERFP DLPKVLEEVN SVTKTFAAFE VEDYTRARTD
VTAQIASSTQ AALLALRPGD ALLGTISVNV DGAGTPIEYG RTWFAADRVT LTLSGYES
|
|---|
| |