Gene Smed_4392 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4392 
Symbol 
ID5319157 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp887594 
End bp888367 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content61% 
IMG OID640776196 
ProductGntR family transcriptional regulator 
Protein accessionYP_001313129 
Protein GI150376533 
COG category[K] Transcription 
COG ID[COG2188] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.599846 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACGAC AGGAAAACCT CCCGGACGAA AGGCCGATCG ACCGCAATCA TCCGGATGCG 
CTTTACGCGC AACTGCGAAA TCTTCTGAGA GGCATGATCG AGCGTCGCGA ATTGGCGGTA
AACGACAAGC TCCCGTCGGA GCGGGAACTC GTGGCAGTTT ACGGCGTCAG CCGCATCACC
GTGCGCCAGG CGATCAAGGA ACTCGAAAAC CTCGGTTATC TGCAAACGCG GCCCGGAAAG
GGTATCTACG TAACCGAGCC CGCTCCGGTC TACGAACTGG AGGTGGTTCG CAGCTTCACC
CAGACGGCCC ATGCCAACAA CCGAAAGCCG GGCATGCGGC TTCTCAGGGC GGAGATCGCA
CGGGCCGACC CGGAAGTTGC GAGACCGCTT TCACTGCCGA CCGGGGCAGA GGTAGTGTTT
CTGGAAAGAC TCCGCCTCCT CGATGGGGTG CCGGTGGTCG TGCAGAGGGA TTGGTTCTCC
GCCTCGCTGA CTCCTGGCAT CCTCGACATC GACTGGACGG TCGAAAACAG GTCGCTTTAC
GATGAGTTCG AGAATCGCTA CGGCATCCTT CCGTCACGCG GACAATCGAC GCTGAGCGCG
AGGCTTGCAT CCGACCTCGA GGCCTCCCTC CTCCAGCTCG ATCGGCCGGC CGCCGTGCTG
ACGCTGGATC AGATTGCCTA TGACAGCCAC AACCGTACCG TAAACATCAG CGCCGCGGCC
TATCATCCGA CCCGCTATCC GCTCTCGCTG ACGCAGTCGC ACCGACGCTT CTGA
 
Protein sequence
MARQENLPDE RPIDRNHPDA LYAQLRNLLR GMIERRELAV NDKLPSEREL VAVYGVSRIT 
VRQAIKELEN LGYLQTRPGK GIYVTEPAPV YELEVVRSFT QTAHANNRKP GMRLLRAEIA
RADPEVARPL SLPTGAEVVF LERLRLLDGV PVVVQRDWFS ASLTPGILDI DWTVENRSLY
DEFENRYGIL PSRGQSTLSA RLASDLEASL LQLDRPAAVL TLDQIAYDSH NRTVNISAAA
YHPTRYPLSL TQSHRRF