Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4392 |
Symbol | |
ID | 5319157 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 887594 |
End bp | 888367 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640776196 |
Product | GntR family transcriptional regulator |
Protein accession | YP_001313129 |
Protein GI | 150376533 |
COG category | [K] Transcription |
COG ID | [COG2188] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.599846 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACGAC AGGAAAACCT CCCGGACGAA AGGCCGATCG ACCGCAATCA TCCGGATGCG CTTTACGCGC AACTGCGAAA TCTTCTGAGA GGCATGATCG AGCGTCGCGA ATTGGCGGTA AACGACAAGC TCCCGTCGGA GCGGGAACTC GTGGCAGTTT ACGGCGTCAG CCGCATCACC GTGCGCCAGG CGATCAAGGA ACTCGAAAAC CTCGGTTATC TGCAAACGCG GCCCGGAAAG GGTATCTACG TAACCGAGCC CGCTCCGGTC TACGAACTGG AGGTGGTTCG CAGCTTCACC CAGACGGCCC ATGCCAACAA CCGAAAGCCG GGCATGCGGC TTCTCAGGGC GGAGATCGCA CGGGCCGACC CGGAAGTTGC GAGACCGCTT TCACTGCCGA CCGGGGCAGA GGTAGTGTTT CTGGAAAGAC TCCGCCTCCT CGATGGGGTG CCGGTGGTCG TGCAGAGGGA TTGGTTCTCC GCCTCGCTGA CTCCTGGCAT CCTCGACATC GACTGGACGG TCGAAAACAG GTCGCTTTAC GATGAGTTCG AGAATCGCTA CGGCATCCTT CCGTCACGCG GACAATCGAC GCTGAGCGCG AGGCTTGCAT CCGACCTCGA GGCCTCCCTC CTCCAGCTCG ATCGGCCGGC CGCCGTGCTG ACGCTGGATC AGATTGCCTA TGACAGCCAC AACCGTACCG TAAACATCAG CGCCGCGGCC TATCATCCGA CCCGCTATCC GCTCTCGCTG ACGCAGTCGC ACCGACGCTT CTGA
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Protein sequence | MARQENLPDE RPIDRNHPDA LYAQLRNLLR GMIERRELAV NDKLPSEREL VAVYGVSRIT VRQAIKELEN LGYLQTRPGK GIYVTEPAPV YELEVVRSFT QTAHANNRKP GMRLLRAEIA RADPEVARPL SLPTGAEVVF LERLRLLDGV PVVVQRDWFS ASLTPGILDI DWTVENRSLY DEFENRYGIL PSRGQSTLSA RLASDLEASL LQLDRPAAVL TLDQIAYDSH NRTVNISAAA YHPTRYPLSL TQSHRRF
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