| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_1307 |
|---|
| Symbol | |
|---|
| ID | 8087869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | + |
|---|
| Start bp | 1496334 |
|---|
| End bp | 1497053 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644835388 |
|---|
| Product | phosphonate metabolism transcriptional regulator PhnF |
|---|
| Protein accession | YP_002986931 |
|---|
| Protein GI | 242238750 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2188] Transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR02325] phosphonates metabolism transcriptional regulator PhnF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00330813 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTGT TGTCTAGACA TCCGACCACA CGATACGAAG CGATCGCCCT CCAGCTGGAA
GAAGAACTGC GCAGCCATTA TCGCGGCGGC GACTATCTGC CGTCGGAGCA ACAACTGGCG
GCACGTTATG ACGTTAACCG CCACACGCTG AGACGGGCGG TGGATGAACT GGTGAACCAA
GGGCTGGTAC AGCGTCGTCG CGGCGTCGGC ACTCTGGTAC TGATGCGTCC GTATGATTAT
CCGCTGCACG CGCAGGCCCG CTTCAGCCAG AACCTGCTGG AACAGGGCAG CCATCCCACC
AGTGAACGTC TGTCGGCACA GTGTGTGTTG GCCGAGGCGG CGATTGCCGC TGCGCTGGGG
TGTCGGGATG GTGAGGAGAT TATCCATTTG CGCACGTTGC GCCGGGTCAA TGGCTCGCCG
GTATGCGTGA TTGACCACTA TCTGCCGGAA CTGCGCTGGT GGCCCGTATT ACAGCATTTT
TGCAGCGGCT CGCTGCACGA TTTTCTCGCG CGTGAATTAC ACCAACCGTT GACCCGGCGT
CAAACCCGCA TCAGCGCCCG TCAGGCGCAG GCGCGGGAAC GGCAACTGTT GGAAATCCCC
CCGCAGACGC CGGTGATGTG CATTCGCACG CTGAACACCT GCACCGGCAG CGATCGGGTG
GCGGAATATT CCATCAGCCT GACGCGCGCC GACATGATTG AACTGACCAT GGAGCACTGA
|
|---|
| Protein sequence | MDVLSRHPTT RYEAIALQLE EELRSHYRGG DYLPSEQQLA ARYDVNRHTL RRAVDELVNQ
GLVQRRRGVG TLVLMRPYDY PLHAQARFSQ NLLEQGSHPT SERLSAQCVL AEAAIAAALG
CRDGEEIIHL RTLRRVNGSP VCVIDHYLPE LRWWPVLQHF CSGSLHDFLA RELHQPLTRR
QTRISARQAQ ARERQLLEIP PQTPVMCIRT LNTCTGSDRV AEYSISLTRA DMIELTMEH
|
|---|
| |