215 homologs were found in PanDaTox collection
for query gene SO_3396 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004347  SO_3396    100 
 
 
1446 bp  2866    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_1155  methyl-accepting chemotaxis sensory transducer  79.37 
 
 
1572 bp  460  1e-127  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1226  methyl-accepting chemotaxis sensory transducer  82.38 
 
 
1572 bp  285  2e-74  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1156  methyl-accepting chemotaxis sensory transducer  82.17 
 
 
1572 bp  278  4.0000000000000004e-72  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3064  methyl-accepting chemotaxis sensory transducer  83.29 
 
 
1569 bp  252  2e-64  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.0000000699577 
 
 
-
 
NC_009997  Sbal195_1324  methyl-accepting chemotaxis sensory transducer  83.07 
 
 
1569 bp  246  2e-62  Shewanella baltica OS195  Bacteria  normal  normal  0.0159359 
 
 
-
 
NC_009052  Sbal_1246  methyl-accepting chemotaxis sensory transducer  82.29 
 
 
1569 bp  222  2e-55  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1290  methyl-accepting chemotaxis sensory transducer  81.73 
 
 
1569 bp  216  1e-53  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2723  methyl-accepting chemotaxis sensory transducer  77.6 
 
 
1569 bp  103  1e-19  Shewanella putrefaciens CN-32  Bacteria  normal  0.471128  n/a   
 
 
-
 
NC_011138  MADE_03575  methyl-accepting chemotaxis protein  88.24 
 
 
1578 bp  89.7  0.000000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000496  methyl-accepting chemotaxis protein  86.32 
 
 
1563 bp  85.7  0.00000000000003  Vibrio sp. Ex25  Bacteria  normal  0.0232366  n/a   
 
 
-
 
NC_009783  VIBHAR_03602    85.71 
 
 
1626 bp  83.8  0.0000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_4372  methyl-accepting chemotaxis protein  86.52 
 
 
1860 bp  81.8  0.0000000000005  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0847  methyl-accepting chemotaxis sensory transducer  86.52 
 
 
1863 bp  81.8  0.0000000000005  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.566037  n/a   
 
 
-
 
NC_009457  VC0395_A0908  methyl-accepting chemotaxis protein  85.87 
 
 
1902 bp  79.8  0.000000000002  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000172893  n/a   
 
 
-
 
NC_011138  MADE_01731  Methyl-accepting chemotaxis protein  85.87 
 
 
1620 bp  79.8  0.000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1444    85.26 
 
 
3459 bp  77.8  0.000000000008  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1084  methyl-accepting chemotaxis sensory transducer  85.26 
 
 
1626 bp  77.8  0.000000000008  Shewanella baltica OS185  Bacteria  hitchhiker  0.000100295  n/a   
 
 
-
 
NC_013456  VEA_004004  methyl-accepting chemotaxis protein  84.69 
 
 
1992 bp  75.8  0.00000000003  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3052  methyl-accepting chemotaxis protein  87.84 
 
 
1740 bp  75.8  0.00000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_4340  methyl-accepting chemotaxis sensory transducer  84.54 
 
 
1983 bp  73.8  0.0000000001  Shewanella baltica OS195  Bacteria  normal  0.751262  normal  0.782794 
 
 
-
 
NC_011663  Sbal223_4136  methyl-accepting chemotaxis sensory transducer  84.54 
 
 
1983 bp  73.8  0.0000000001  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_4208  methyl-accepting chemotaxis sensory transducer  84.54 
 
 
1983 bp  73.8  0.0000000001  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0956  methyl-accepting chemotaxis sensory transducer  87.01 
 
 
2031 bp  73.8  0.0000000001  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1442  methyl-accepting chemotaxis sensory transducer  86.25 
 
 
1455 bp  71.9  0.0000000005  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I1951  methyl-accepting chemotaxis protein  89.06 
 
 
2163 bp  71.9  0.0000000005  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3274  methyl-accepting chemotaxis sensory transducer  84.21 
 
 
1626 bp  69.9  0.000000002  Shewanella baltica OS223  Bacteria  normal  0.0175031  normal  0.083895 
 
 
-
 
NC_009665  Shew185_2990  methyl-accepting chemotaxis sensory transducer  85.06 
 
 
2004 bp  69.9  0.000000002  Shewanella baltica OS185  Bacteria  normal  0.413203  n/a   
 
 
-
 
NC_009997  Sbal195_3134  methyl-accepting chemotaxis sensory transducer  85.06 
 
 
2004 bp  69.9  0.000000002  Shewanella baltica OS195  Bacteria  normal  0.0135223  normal  0.80442 
 
 
-
 
NC_009052  Sbal_0274  methyl-accepting chemotaxis sensory transducer  87.32 
 
 
1956 bp  69.9  0.000000002  Shewanella baltica OS155  Bacteria  normal  0.292308  n/a   
 
 
-
 
NC_009052  Sbal_2976  methyl-accepting chemotaxis sensory transducer  85.06 
 
 
2004 bp  69.9  0.000000002  Shewanella baltica OS155  Bacteria  hitchhiker  0.000241408  n/a   
 
 
-
 
NC_009438  Sputcn32_0380  methyl-accepting chemotaxis sensory transducer  87.32 
 
 
1956 bp  69.9  0.000000002  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_3010  chemotaxis sensory transducer  84.44 
 
 
1620 bp  67.9  0.000000008  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0336  methyl-accepting chemotaxis sensory transducer  84.88 
 
 
1503 bp  67.9  0.000000008  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0948  methyl-accepting chemotaxis sensory transducer  84.04 
 
 
2004 bp  67.9  0.000000008  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4186  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  86.49 
 
 
1581 bp  67.9  0.000000008  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3399  methyl-accepting chemotaxis sensory transducer  82.86 
 
 
1581 bp  65.9  0.00000003  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_004349  SO_A0106  methyl-accepting chemotaxis protein  83.51 
 
 
1641 bp  65.9  0.00000003  Shewanella oneidensis MR-1  Bacteria  normal  0.827543  n/a   
 
 
-
 
NC_007492  Pfl01_0657  chemotaxis sensory transducer, Cache sensor  87.69 
 
 
1947 bp  65.9  0.00000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.511779  normal 
 
 
-
 
NC_009831  Ssed_4216  methyl-accepting chemotaxis sensory transducer  86.3 
 
 
1944 bp  65.9  0.00000003  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05387  histidine kinase  95.12 
 
 
1770 bp  65.9  0.00000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_0185  methyl-accepting chemotaxis protein  82.86 
 
 
2313 bp  65.9  0.00000003  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1427  methyl-accepting chemotaxis sensory transducer  85 
 
 
1941 bp  63.9  0.0000001  Pseudomonas putida W619  Bacteria  normal  0.0815522  normal  0.369158 
 
 
-
 
NC_009654  Mmwyl1_4057  methyl-accepting chemotaxis sensory transducer  85 
 
 
1614 bp  63.9  0.0000001  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_0343  methyl-accepting chemotaxis sensory transducer  83.7 
 
 
1644 bp  63.9  0.0000001  Saccharophagus degradans 2-40  Bacteria  normal  0.0441023  normal  0.46066 
 
 
-
 
NC_009456  VC0395_0331  methyl-accepting chemotaxis protein  86.76 
 
 
1737 bp  63.9  0.0000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0581  methyl-accepting chemotaxis sensory transducer  85 
 
 
1665 bp  63.9  0.0000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1012  hypothetical protein  84.09 
 
 
1881 bp  63.9  0.0000001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3266  methyl-accepting chemotaxis sensory transducer  85 
 
 
1632 bp  63.9  0.0000001  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II1022  methyl-accepting chemotaxis protein  84.34 
 
 
1887 bp  61.9  0.0000005  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.771007  n/a   
 
 
-
 
NC_011663  Sbal223_3551  methyl-accepting chemotaxis sensory transducer  84.81 
 
 
1863 bp  61.9  0.0000005  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00183884 
 
 
-
 
NC_007520  Tcr_0570  methyl-accepting chemotaxis sensory transducer  83.16 
 
 
2025 bp  61.9  0.0000005  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3428  methyl-accepting chemotaxis sensory transducer  84.81 
 
 
2004 bp  61.9  0.0000005  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0962  methyl-accepting chemotaxis protein  83.16 
 
 
1932 bp  61.9  0.0000005  Vibrio cholerae O395  Bacteria  hitchhiker  0.000917898  n/a   
 
 
-
 
NC_009654  Mmwyl1_4154  methyl-accepting chemotaxis sensory transducer  85.92 
 
 
1929 bp  61.9  0.0000005  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0632  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  85.92 
 
 
1299 bp  61.9  0.0000005  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00946465  normal  0.0217008 
 
 
-
 
NC_008322  Shewmr7_0792  methyl-accepting chemotaxis sensory transducer  85.92 
 
 
1863 bp  61.9  0.0000005  Shewanella sp. MR-7  Bacteria  normal  0.912748  normal  0.850506 
 
 
-
 
NC_008322  Shewmr7_2170  methyl-accepting chemotaxis sensory transducer  84.34 
 
 
1518 bp  61.9  0.0000005  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3397  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  85.92 
 
 
1299 bp  61.9  0.0000005  Shewanella sp. MR-7  Bacteria  hitchhiker  0.00889273  normal 
 
 
-
 
NC_008345  Sfri_0524  methyl-accepting chemotaxis sensory transducer  85.92 
 
 
1620 bp  61.9  0.0000005  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1146  methyl-accepting chemotaxis sensory transducer  85.92 
 
 
2007 bp  61.9  0.0000005  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.970933  n/a   
 
 
-
 
NC_009665  Shew185_2601  methyl-accepting chemotaxis sensory transducer  88.14 
 
 
1998 bp  61.9  0.0000005  Shewanella baltica OS185  Bacteria  hitchhiker  0.0000150661  n/a   
 
 
-
 
NC_009052  Sbal_0691  methyl-accepting chemotaxis sensory transducer  84.81 
 
 
1863 bp  61.9  0.0000005  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1082  methyl-accepting chemotaxis sensory transducer  84.34 
 
 
1488 bp  61.9  0.0000005  Shewanella baltica OS155  Bacteria  hitchhiker  0.000101058  n/a   
 
 
-
 
NC_003910  CPS_0763  methyl-accepting chemotaxis protein  83.72 
 
 
1986 bp  60  0.000002  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4343  chemotaxis sensory transducer, Pas/Pac sensor  85.14 
 
 
1320 bp  60  0.000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1436  methyl-accepting chemotaxis sensory transducer  83.72 
 
 
993 bp  60  0.000002  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5868  methyl-accepting chemotaxis protein I  87.1 
 
 
1665 bp  60  0.000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01753  hypothetical protein  82.65 
 
 
1638 bp  60  0.000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_0583  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  87.1 
 
 
1575 bp  60  0.000002  Shewanella sp. MR-4  Bacteria  normal  normal  0.344402 
 
 
-
 
NC_008322  Shewmr7_3447  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  87.1 
 
 
1575 bp  60  0.000002  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1416  methyl-accepting chemotaxis sensory transducer  82.08 
 
 
1446 bp  60  0.000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.493152  n/a   
 
 
-
 
NC_008577  Shewana3_1499  methyl-accepting chemotaxis sensory transducer  87.1 
 
 
1455 bp  60  0.000002  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3709  methyl-accepting chemotaxis sensory transducer  94.74 
 
 
2124 bp  60  0.000002  Marinomonas sp. MWYL1  Bacteria  normal  0.852924  normal  0.967698 
 
 
-
 
NC_010468  EcolC_3700  methyl-accepting chemotaxis sensory transducer  87.1 
 
 
1665 bp  60  0.000002  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.125609 
 
 
-
 
NC_009801  EcE24377A_4947  methyl-accepting chemotaxis protein I  87.1 
 
 
1665 bp  60  0.000002  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003409  methyl-accepting chemotaxis protein  83.15 
 
 
1404 bp  58  0.000007  Vibrio sp. Ex25  Bacteria  decreased coverage  0.0000050033  n/a   
 
 
-
 
NC_009997  Sbal195_1117  methyl-accepting chemotaxis sensory transducer  82.47 
 
 
1626 bp  58  0.000007  Shewanella baltica OS195  Bacteria  normal  0.0100073  normal  0.0339889 
 
 
-
 
NC_003910  CPS_4528  methyl-accepting chemotaxis protein  86.15 
 
 
2019 bp  58  0.000007  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001512  aerotaxis sensor receptor protein  88.68 
 
 
1551 bp  58  0.000007  Vibrio sp. Ex25  Bacteria  normal  0.961146  n/a   
 
 
-
 
NC_013512  Sdel_0367  chemotaxis sensory transducer  86.15 
 
 
1452 bp  58  0.000007  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.124323  n/a   
 
 
-
 
NC_007005  Psyr_1539  histidine kinase, HAMP region: chemotaxis sensory transducer  89.8 
 
 
1881 bp  58  0.000007  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.206608  normal  0.0710897 
 
 
-
 
NC_007492  Pfl01_4758  chemotaxis sensory transducer  88.68 
 
 
2058 bp  58  0.000007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0781085  normal  0.27831 
 
 
-
 
NC_008322  Shewmr7_3118  methyl-accepting chemotaxis sensory transducer  84.42 
 
 
2022 bp  58  0.000007  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  82.18 
 
 
1863 bp  58  0.000007  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_009997  Sbal195_3522  methyl-accepting chemotaxis sensory transducer  92.68 
 
 
1089 bp  58  0.000007  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3099  methyl-accepting chemotaxis sensory transducer  84.42 
 
 
2019 bp  58  0.000007  Marinobacter aquaeolei VT8  Bacteria  normal  0.500846  n/a   
 
 
-
 
NC_009052  Sbal_1015  methyl-accepting chemotaxis sensory transducer  82.47 
 
 
1626 bp  58  0.000007  Shewanella baltica OS155  Bacteria  unclonable  0.0000000434326  n/a   
 
 
-
 
NC_009665  Shew185_3397  methyl-accepting chemotaxis sensory transducer  92.68 
 
 
1089 bp  58  0.000007  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2922    83.15 
 
 
1100 bp  58  0.000007  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000805322  n/a   
 
 
-
 
NC_009438  Sputcn32_1313  methyl-accepting chemotaxis sensory transducer  82.8 
 
 
2028 bp  58  0.000007  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5601  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  87.5 
 
 
1656 bp  56  0.00003  Ralstonia eutropha JMP134  Bacteria  normal  0.510218  n/a   
 
 
-
 
NC_007348  Reut_B5602  methyl-accepting chemotaxis sensory transducer  87.5 
 
 
1785 bp  56  0.00003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2178  methyl-accepting protein IV  90.91 
 
 
1602 bp  56  0.00003  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2079  methyl-accepting chemotaxis protein II  83.75 
 
 
1662 bp  56  0.00003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.429347  hitchhiker  1.96177e-16 
 
 
-
 
NC_008322  Shewmr7_1507  methyl-accepting chemotaxis sensory transducer  83.75 
 
 
1455 bp  56  0.00003  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_3526  methyl-accepting chemotaxis sensory transducer  85.29 
 
 
1560 bp  56  0.00003  Enterobacter sp. 638  Bacteria  normal  0.398255  normal  0.520422 
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  83.75 
 
 
1905 bp  56  0.00003  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3346  methyl-accepting chemotaxis sensory transducer  88.46 
 
 
1674 bp  56  0.00003  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.418138 
 
 
-
 
NC_009457  VC0395_A2871  methyl-accepting chemotaxis protein  82.61 
 
 
1626 bp  56  0.00003  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000270316  n/a   
 
 
-
 
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