| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1539 |
|---|
| Symbol | |
|---|
| ID | 3367038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1732352 |
|---|
| End bp | 1734232 |
|---|
| Gene Length | 1881 bp |
|---|
| Protein Length | 626 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637651880 |
|---|
| Product | histidine kinase, HAMP region: chemotaxis sensory transducer |
|---|
| Protein accession | YP_234626 |
|---|
| Protein GI | 66044785 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.206608 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0710897 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTTC GGGCGAAGCT ACTGGTGGGG TTCGGACTGT TGATTTTAAT GATTTTGTTA
ATGGCTTATA CGGGAAAGGA TGCCACCGAT ACGTTGAAGC GTCGGGCTGA ACTGTCTGGG
GATATTGCTC AATTCAGCTC GATCGCCCGA GACATGCGTA TCGAGCGTTT GGTTTATTTT
TTAAAAGCGG ATGATGCACA GGCTTCAAAG TGGTTGGAGG CACTCGAGCG GACGGAGCGT
CAGCTGGTGA GCATCTCGCC CCGTTTCAAA ACAGCCAATA ACATCGCGCT GCTCAAAGAA
GCCCAAACGA CGATGCAGCT TTACCGTGGG TTCTATACTC GATCAGTCGA GGCTACTCGA
GAGCGTGAGC AACTGCGGAC CCTTGCCGGC GCTTCGGGCG AAACGATTAA CGGTTTGTTG
CTGAAGATCG CAGAAGCCGC CAACGACGAG AGCGGGAATG CCGCGGATCG TCAGAAACTC
CCTGCACTGT TTATCTCTGT CCAGAAGATG CGAACCGCGT TTCGCTCTTA TACGGCATCC
CCGAGTAAAA GCGGGGAAGA CACTGTCCGT CAGGCAATAG CGCAGGTGGT GGCCAGTATC
GACACGCTCA AAGATACCAG TTTGCCCCGT GCTGACGTTC AAGCGTTGGC GGCAGGAATG
GCCACCTATA GCGGGCAACT GGAAACATTA GTTGCCGCTC AGGCCAAAGT TGATGAGGCT
CAAGGCGGTA TCACAACGTC GATCGCCACC ATTCTTGGCA TTACGGACAA GATGACGGCT
ATCCAGAATG AGTTTCGTGC CTCCGATGCA GAGAAAGCAC AGGAGAAGAT TTTGCTCTGG
CTGGGCCTTT CTGCTCTCTT GGGTGTTCTT GCGGCCTGGT TGATTACTCG ATCAATTGTT
CATCCACTCA AAGAGACTGT TGAAATCGTT GAAGTCGTTG CAGAAGGGGA TTTTACGTAC
AAAACGCAAG TGACTCGAAA TGATGAGTTG GGCGCGTTGC AGGGCAGCAT GCTGCGCATG
ACGTCCGGGC TCCGAAGCCT GATCGGGGAA ATGAAAGACG GAATCGTGCA GGTGGCAAGC
GCGGCAGAGC AGCTTTCAGC AGTAACCGAG CAGACCAGTG CGGGCGTGAA CGCGCAGAAG
CTGGAGACTG AGCAGATTGC CACTGCGATG CAGCAGATGA CAGCCACTAC TCATGAGGTA
TCTCGTAATG CAGCCCAAGC CGTAAATACT GCGCAAATCG CCAGTCAGTT GGCCCAGAAA
GGTGGGCAAG TCGTTGACAG GACTCGTTCC CAGATAGAGA CCCTGGCGCG TGAGATGAAC
ATGACCAGAA CAGCGATGGC GGCGCTTAGA GGGAATACTC AGAGCATCGG TGGCGTGCTG
GATGTGATAA AAACGGTGGC TGATCAGACA AACCTTCTGG CGTTGAACGC GGCCATTGAA
GCTGCGCGTG CCGGGGAGGC AGGACGTGGT TTCGCTGTCG TCGCGGACGA GGTGAGAGGC
CTGGCGGTGC GCACCCGCAC GTCAACAGAC GAGATCGCTC TGCTTATAAA CGAACTGCAA
ACCAGTACCG ATCATATGGG GCAGGTTCTA GAGCAAAATC TGGCACTGAC GGACAGCAGT
GTCGAACTGT CTACGCAAGC CAGCGAAGTG CTGCAGAGTA TTACCGCATC TGTTCATGAG
ATTGAGGTGA TGAACGAACA GATCGCCGTT GCTACTGAGC AGCAAAGTAA CGTCGGTGAA
GAAATAGGCA GGGGCGTCAC GAATGTCAGG GACATTTCAG ACCAAACAGC CGCCGCCAGT
GAAGAGACAG CGACATCGAG TGTTGAATTG GCCAGAGTCA GCGCCAGACT GCAGGAGATG
ACCAACCGGT TTAAAGTCTA G
|
|---|
| Protein sequence | MTVRAKLLVG FGLLILMILL MAYTGKDATD TLKRRAELSG DIAQFSSIAR DMRIERLVYF
LKADDAQASK WLEALERTER QLVSISPRFK TANNIALLKE AQTTMQLYRG FYTRSVEATR
EREQLRTLAG ASGETINGLL LKIAEAANDE SGNAADRQKL PALFISVQKM RTAFRSYTAS
PSKSGEDTVR QAIAQVVASI DTLKDTSLPR ADVQALAAGM ATYSGQLETL VAAQAKVDEA
QGGITTSIAT ILGITDKMTA IQNEFRASDA EKAQEKILLW LGLSALLGVL AAWLITRSIV
HPLKETVEIV EVVAEGDFTY KTQVTRNDEL GALQGSMLRM TSGLRSLIGE MKDGIVQVAS
AAEQLSAVTE QTSAGVNAQK LETEQIATAM QQMTATTHEV SRNAAQAVNT AQIASQLAQK
GGQVVDRTRS QIETLAREMN MTRTAMAALR GNTQSIGGVL DVIKTVADQT NLLALNAAIE
AARAGEAGRG FAVVADEVRG LAVRTRTSTD EIALLINELQ TSTDHMGQVL EQNLALTDSS
VELSTQASEV LQSITASVHE IEVMNEQIAV ATEQQSNVGE EIGRGVTNVR DISDQTAAAS
EETATSSVEL ARVSARLQEM TNRFKV
|
|---|
| |