More than 300 homologs were found in PanDaTox collection
for query gene Rfer_3768 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007908  Rfer_3768  LuxR family transcriptional regulator  100 
 
 
231 aa  459  9.999999999999999e-129  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0302  LuxR family transcriptional regulator  61.4 
 
 
227 aa  251  1e-65  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1314  transcriptional regulator, LuxR family  35.14 
 
 
204 aa  124  9e-28  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.404844  normal 
 
 
-
 
NC_007298  Daro_3200  LuxR family transcriptional regulator  39.07 
 
 
205 aa  124  1e-27  Dechloromonas aromatica RCB  Bacteria  normal  0.618751  normal  0.891545 
 
 
-
 
NC_007520  Tcr_0205  LuxR family transcriptional regulator  32.89 
 
 
205 aa  91.7  9e-18  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02940  putative LuxR-family transcriptional regulator  34.34 
 
 
198 aa  90.5  2e-17  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.775864  n/a   
 
 
-
 
NC_009715  CCV52592_0166  transcriptional regulator, LuxR family protein  29.8 
 
 
207 aa  85.5  6e-16  Campylobacter curvus 525.92  Bacteria  hitchhiker  0.00243136  n/a   
 
 
-
 
NC_013512  Sdel_0795  regulatory protein LuxR  32.9 
 
 
202 aa  85.1  7e-16  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.0000492678  n/a   
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  33.55 
 
 
226 aa  78.6  0.00000000000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_009802  CCC13826_0894  putative outer membrane component of efflux system  27.22 
 
 
211 aa  78.2  0.0000000000001  Campylobacter concisus 13826  Bacteria  hitchhiker  0.00401485  n/a   
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  30.77 
 
 
211 aa  76.3  0.0000000000004  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  32.89 
 
 
218 aa  76.3  0.0000000000004  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  30.72 
 
 
225 aa  74.7  0.000000000001  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  27.36 
 
 
233 aa  73.6  0.000000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  27.5 
 
 
224 aa  73.2  0.000000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013521  Sked_16860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.1 
 
 
258 aa  73.2  0.000000000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.85724  normal  0.036031 
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  31.47 
 
 
207 aa  72.4  0.000000000005  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  31.47 
 
 
207 aa  72.4  0.000000000005  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  32.65 
 
 
215 aa  72  0.000000000007  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  31.87 
 
 
213 aa  72  0.000000000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
NC_005945  BAS2109  LuxR family DNA-binding response regulator  32.24 
 
 
209 aa  70.9  0.00000000001  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  32.65 
 
 
215 aa  71.2  0.00000000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_2048  response regulator  32.24 
 
 
209 aa  70.9  0.00000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.102554  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  32.65 
 
 
215 aa  71.2  0.00000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK2046  response regulator  32.24 
 
 
209 aa  70.9  0.00000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  32.65 
 
 
215 aa  71.2  0.00000000001  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_007530  GBAA_2265  LuxR family DNA-binding response regulator  32.24 
 
 
209 aa  70.9  0.00000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.201191  n/a   
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  32.65 
 
 
215 aa  71.2  0.00000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2245  DNA-binding response regulator, LuxR family  32.7 
 
 
213 aa  71.2  0.00000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  32.65 
 
 
215 aa  71.2  0.00000000001  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  34.21 
 
 
214 aa  71.2  0.00000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_2290  DNA-binding response regulator, LuxR family  32.24 
 
 
209 aa  70.9  0.00000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000736213 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  29.73 
 
 
222 aa  71.2  0.00000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_013170  Ccur_10690  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  30.32 
 
 
215 aa  70.9  0.00000000002  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B3078  DNA-binding response regulator, LuxR family  32.08 
 
 
213 aa  70.9  0.00000000002  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000000185138 
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  31.97 
 
 
215 aa  70.5  0.00000000002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A2375  DNA-binding response regulator, LuxR family  30.92 
 
 
209 aa  70.1  0.00000000003  Bacillus cereus AH187  Bacteria  normal  0.248491  n/a   
 
 
-
 
NC_007614  Nmul_A2674  two component LuxR family transcriptional regulator  28.25 
 
 
203 aa  70.1  0.00000000003  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.125422  n/a   
 
 
-
 
NC_013595  Sros_8800  response regulator receiver protein  31.28 
 
 
215 aa  69.7  0.00000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.752334  normal 
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  30.72 
 
 
224 aa  70.1  0.00000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  31.97 
 
 
215 aa  69.7  0.00000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  31.97 
 
 
215 aa  69.3  0.00000000004  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  31.97 
 
 
215 aa  69.7  0.00000000004  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_0565  two component transcriptional regulator, LuxR family  30.38 
 
 
213 aa  69.7  0.00000000004  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  30.07 
 
 
216 aa  69.7  0.00000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  30.61 
 
 
234 aa  68.9  0.00000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_012803  Mlut_02970  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.03 
 
 
227 aa  68.9  0.00000000006  Micrococcus luteus NCTC 2665  Bacteria  normal  0.611463  n/a   
 
 
-
 
NC_013131  Caci_5428  two component transcriptional regulator, LuxR family  31.52 
 
 
201 aa  68.6  0.00000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358603 
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  28.76 
 
 
207 aa  68.2  0.0000000001  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_008699  Noca_3488  response regulator receiver  32.37 
 
 
229 aa  67.8  0.0000000001  Nocardioides sp. JS614  Bacteria  normal  0.920048  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  29.22 
 
 
223 aa  67.8  0.0000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_009654  Mmwyl1_2822  response regulator receiver protein  26.18 
 
 
211 aa  67.8  0.0000000001  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.473652 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  28.87 
 
 
224 aa  68.2  0.0000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_011884  Cyan7425_3249  two component transcriptional regulator, LuxR family  28.19 
 
 
211 aa  67.4  0.0000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.414819  normal  0.558116 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  29.61 
 
 
228 aa  67  0.0000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  27.72 
 
 
225 aa  67  0.0000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_009767  Rcas_4428  two component LuxR family transcriptional regulator  32.24 
 
 
231 aa  67.4  0.0000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0637  two component transcriptional regulator, LuxR family  30.87 
 
 
229 aa  66.6  0.0000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.565019 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  30.26 
 
 
221 aa  66.6  0.0000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  29.12 
 
 
225 aa  66.6  0.0000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  27.72 
 
 
226 aa  66.6  0.0000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  31.12 
 
 
220 aa  66.6  0.0000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013947  Snas_3639  two component transcriptional regulator, LuxR family  31.91 
 
 
215 aa  66.6  0.0000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.274763  normal 
 
 
-
 
NC_013093  Amir_4433  two component transcriptional regulator, LuxR family  33.09 
 
 
215 aa  66.2  0.0000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  31.37 
 
 
217 aa  66.2  0.0000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.482316 
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  26.14 
 
 
228 aa  66.2  0.0000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0544  two component transcriptional regulator, LuxR family  31.91 
 
 
215 aa  66.2  0.0000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  35 
 
 
224 aa  66.2  0.0000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_26900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.1 
 
 
247 aa  66.2  0.0000000004  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00793239  normal  0.935402 
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  32.41 
 
 
220 aa  66.2  0.0000000004  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  31.87 
 
 
253 aa  66.2  0.0000000004  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  32.19 
 
 
242 aa  65.9  0.0000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_007404  Tbd_0670  two component LuxR family transcriptional regulator  31.68 
 
 
265 aa  65.9  0.0000000005  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.998369  normal  0.706802 
 
 
-
 
NC_008527  LACR_0967  DNA-binding response regulator  29.53 
 
 
209 aa  65.9  0.0000000005  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.598364  n/a   
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  28.86 
 
 
218 aa  65.9  0.0000000005  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  30.98 
 
 
217 aa  65.9  0.0000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  28.72 
 
 
209 aa  65.5  0.0000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  30.41 
 
 
226 aa  65.5  0.0000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  28.17 
 
 
236 aa  65.9  0.0000000006  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  30.72 
 
 
227 aa  65.5  0.0000000007  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.39 
 
 
244 aa  65.5  0.0000000007  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  28.66 
 
 
230 aa  65.5  0.0000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_2348  two component LuxR family transcriptional regulator  29.05 
 
 
219 aa  65.1  0.0000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.524488 
 
 
-
 
NC_010571  Oter_2926  two component LuxR family transcriptional regulator  30.32 
 
 
223 aa  65.5  0.0000000008  Opitutus terrae PB90-1  Bacteria  normal  0.380263  normal 
 
 
-
 
NC_013132  Cpin_0010  two component transcriptional regulator, LuxR family  25.91 
 
 
219 aa  65.5  0.0000000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3070  two component transcriptional regulator, LuxR family  30.86 
 
 
216 aa  65.1  0.0000000009  Shewanella baltica OS223  Bacteria  decreased coverage  0.000689776  unclonable  0.00000000000283062 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  31.58 
 
 
219 aa  65.1  0.0000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  30.72 
 
 
226 aa  65.1  0.0000000009  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_1241  two component LuxR family transcriptional regulator  30.86 
 
 
216 aa  65.1  0.0000000009  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000399601  n/a   
 
 
-
 
NC_002967  TDE0149  DNA-binding response regulator  26.97 
 
 
201 aa  64.7  0.000000001  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  26.92 
 
 
208 aa  65.1  0.000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  31.94 
 
 
226 aa  64.7  0.000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  31.41 
 
 
220 aa  64.7  0.000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_4922  two component transcriptional regulator, LuxR family  29.28 
 
 
206 aa  64.3  0.000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0302523  normal 
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  28.76 
 
 
213 aa  64.3  0.000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal 
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  28.1 
 
 
225 aa  64.3  0.000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_013530  Xcel_0239  two component transcriptional regulator, LuxR family  30.85 
 
 
230 aa  65.1  0.000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  31.17 
 
 
225 aa  65.1  0.000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_009664  Krad_2658  two component transcriptional regulator, LuxR family  29.1 
 
 
215 aa  64.7  0.000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6529  two component transcriptional regulator, LuxR family  31.58 
 
 
224 aa  64.7  0.000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.270807  normal  0.114568 
 
 
-
 
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