More than 300 homologs were found in PanDaTox collection
for query gene Phep_2439 on replicon NC_013061
Organism: Pedobacter heparinus DSM 2366



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013061  Phep_2439  LytTr DNA-binding region  100 
 
 
255 aa  522  1e-147  Pedobacter heparinus DSM 2366  Bacteria  normal  0.697869  normal 
 
 
-
 
NC_013037  Dfer_5312  two component transcriptional regulator, LytTR family  42.75 
 
 
255 aa  200  1.9999999999999998e-50  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.0977362 
 
 
-
 
NC_013061  Phep_2789  response regulator receiver  39.06 
 
 
254 aa  187  2e-46  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0600  two component transcriptional regulator, LytTR family  36.33 
 
 
265 aa  182  5.0000000000000004e-45  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.315052 
 
 
-
 
NC_013730  Slin_1794  two component transcriptional regulator, LytTR family  37.4 
 
 
260 aa  180  2e-44  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2868  two component transcriptional regulator, LytTR family  38.13 
 
 
259 aa  177  2e-43  Spirosoma linguale DSM 74  Bacteria  normal  0.0154807  normal 
 
 
-
 
NC_014230  CA2559_12408  two-component system response regulator  39.84 
 
 
251 aa  176  3e-43  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.401855  n/a   
 
 
-
 
NC_013037  Dfer_2256  two component transcriptional regulator, LytTR family  36.54 
 
 
262 aa  174  9.999999999999999e-43  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.596319 
 
 
-
 
NC_013037  Dfer_1317  two component transcriptional regulator, LytTR family  35.88 
 
 
261 aa  174  9.999999999999999e-43  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2775  two component transcriptional regulator, LytTR family  36.96 
 
 
258 aa  174  1.9999999999999998e-42  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0804  two component transcriptional regulator, LytTR family  38.31 
 
 
251 aa  172  5.999999999999999e-42  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3229  LytTR family two component transcriptional regulator  37.85 
 
 
250 aa  171  7.999999999999999e-42  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2091  two component transcriptional regulator, LytTR family  33.72 
 
 
259 aa  169  5e-41  Spirosoma linguale DSM 74  Bacteria  normal  0.0504817  normal  0.478744 
 
 
-
 
NC_009441  Fjoh_4908  LytTR family two component transcriptional regulator  41.54 
 
 
255 aa  168  8e-41  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0271  two component transcriptional regulator, LytTR family  35.94 
 
 
256 aa  167  1e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6102  two component transcriptional regulator, LytTR family  36.11 
 
 
252 aa  165  5.9999999999999996e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5824  two component transcriptional regulator, LytTR family  33.46 
 
 
258 aa  164  1.0000000000000001e-39  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0489181 
 
 
-
 
NC_013037  Dfer_1444  two component transcriptional regulator, LytTR family  36.54 
 
 
256 aa  164  1.0000000000000001e-39  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.317386 
 
 
-
 
NC_013132  Cpin_2661  two component transcriptional regulator, LytTR family  33.2 
 
 
252 aa  155  5.0000000000000005e-37  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0800  two component transcriptional regulator, LytTR family  33.59 
 
 
251 aa  154  1e-36  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2354  two component transcriptional regulator, LytTR family  35.77 
 
 
256 aa  152  4e-36  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5405  two component transcriptional regulator, LytTR family  33.73 
 
 
243 aa  148  1.0000000000000001e-34  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.379459 
 
 
-
 
NC_013132  Cpin_6676  two component transcriptional regulator, LytTR family  32.41 
 
 
253 aa  147  2.0000000000000003e-34  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6060  two component transcriptional regulator, LytTR family  32.68 
 
 
253 aa  146  3e-34  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1475  two component transcriptional regulator, LytTR family  33.2 
 
 
255 aa  144  1e-33  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.059663 
 
 
-
 
NC_013132  Cpin_0307  two component transcriptional regulator, LytTR family  33.47 
 
 
250 aa  142  5e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3726  two component transcriptional regulator, LytTR family  33.33 
 
 
252 aa  141  9e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.304835 
 
 
-
 
NC_013730  Slin_1836  two component transcriptional regulator, LytTR family  32.58 
 
 
258 aa  141  9.999999999999999e-33  Spirosoma linguale DSM 74  Bacteria  normal  0.367672  normal  0.467017 
 
 
-
 
NC_013132  Cpin_7151  two component transcriptional regulator, LytTR family  29.88 
 
 
249 aa  141  9.999999999999999e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4001  LytTR family two component transcriptional regulator  31.54 
 
 
255 aa  139  6e-32  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5335  two component transcriptional regulator, LytTR family  32.56 
 
 
253 aa  137  2e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.709567 
 
 
-
 
NC_013037  Dfer_0758  two component transcriptional regulator, LytTR family  31.54 
 
 
256 aa  128  7.000000000000001e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.649382 
 
 
-
 
NC_013132  Cpin_6406  two component transcriptional regulator, LytTR family  31.76 
 
 
252 aa  124  1e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1209  LytTr DNA-binding region  32.28 
 
 
240 aa  120  3e-26  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0837  response regulator receiver protein  45 
 
 
153 aa  111  1.0000000000000001e-23  Spirosoma linguale DSM 74  Bacteria  normal  0.925678  normal 
 
 
-
 
NC_009441  Fjoh_4674  LytTR family two component transcriptional regulator  30.34 
 
 
254 aa  110  3e-23  Flavobacterium johnsoniae UW101  Bacteria  normal  0.124147  n/a   
 
 
-
 
NC_013037  Dfer_5142  two component transcriptional regulator, LytTR family  30.08 
 
 
244 aa  102  7e-21  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.546377  normal 
 
 
-
 
NC_009674  Bcer98_3958  LytTR family two component transcriptional regulator  29.82 
 
 
246 aa  99  7e-20  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0374  two component transcriptional regulator, LytTR family  31.73 
 
 
242 aa  99  7e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1001  LytR/AlgR family transcriptional regulator  27.31 
 
 
262 aa  98.2  1e-19  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0103069 
 
 
-
 
NC_013037  Dfer_1279  two component transcriptional regulator, LytTR family  27.49 
 
 
248 aa  98.2  1e-19  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.111911  normal  0.254446 
 
 
-
 
NC_010184  BcerKBAB4_5234  LytTR family two component transcriptional regulator  30.97 
 
 
246 aa  95.1  8e-19  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2172  LytR/AlgR family transcriptional regulator  28.63 
 
 
252 aa  93.6  3e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0721488  normal  0.0255714 
 
 
-
 
NC_010424  Daud_0119  response regulator receiver protein  29.57 
 
 
249 aa  93.6  3e-18  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5573  response regulator LytR  31.42 
 
 
246 aa  92.8  4e-18  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5137  response regulator  30.97 
 
 
246 aa  93.2  4e-18  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0979  LytTR family two component transcriptional regulator  30.92 
 
 
242 aa  92.8  5e-18  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0238694 
 
 
-
 
NC_011658  BCAH187_A5621  response regulator LytR  30.97 
 
 
246 aa  92  9e-18  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5295  response regulator LytR  30.53 
 
 
246 aa  91.3  1e-17  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5122  response regulator  30.53 
 
 
246 aa  91.3  1e-17  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5691  response regulator LytR  30.53 
 
 
246 aa  91.3  1e-17  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5536  response regulator LytR  30.53 
 
 
246 aa  91.3  1e-17  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013061  Phep_1585  LytTr DNA-binding region  30 
 
 
259 aa  90.5  2e-17  Pedobacter heparinus DSM 2366  Bacteria  normal  0.80455  normal  0.0356965 
 
 
-
 
NC_011725  BCB4264_A5565  response regulator LytR  30.53 
 
 
246 aa  90.1  3e-17  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6623  two component transcriptional regulator, LytTR family  29.69 
 
 
258 aa  89  6e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0991065  normal  0.080317 
 
 
-
 
NC_013501  Rmar_2186  two component transcriptional regulator, LytTR family  26.45 
 
 
275 aa  89  6e-17  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5384  response regulator LytR  30.53 
 
 
246 aa  88.6  8e-17  Bacillus cereus G9842  Bacteria  normal  0.662493  normal  0.485514 
 
 
-
 
NC_010730  SYO3AOP1_0715  two component transcriptional regulator, LytTR family  32.2 
 
 
245 aa  87.8  1e-16  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00500528  n/a   
 
 
-
 
NC_008528  OEOE_0885  response regulator  29.64 
 
 
247 aa  87.4  2e-16  Oenococcus oeni PSU-1  Bacteria  normal  0.0355946  n/a   
 
 
-
 
NC_009487  SaurJH9_0246  two-component response regulator  29.08 
 
 
246 aa  86.7  3e-16  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0252  two-component response regulator  29.08 
 
 
246 aa  86.7  3e-16  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0847  response regulator receiver  28.92 
 
 
232 aa  85.9  5e-16  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1246  LytTR family two component transcriptional regulator  30.17 
 
 
254 aa  85.5  7e-16  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2443  LytTR family two component transcriptional regulator  25.65 
 
 
279 aa  85.5  8e-16  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2906  two component transcriptional regulator, LytTR family  30.08 
 
 
245 aa  85.1  0.000000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0858  response regulator receiver protein  38.26 
 
 
141 aa  84.7  0.000000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.748894  normal 
 
 
-
 
NC_013204  Elen_0137  two component transcriptional regulator, LytTR family  28.97 
 
 
237 aa  84.3  0.000000000000002  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4801  two component transcriptional regulator, LytTR family  24.22 
 
 
240 aa  84  0.000000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.154299  normal 
 
 
-
 
NC_009513  Lreu_0904  LytTR family two component transcriptional regulator  27.67 
 
 
243 aa  83.2  0.000000000000003  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1761  two component transcriptional regulator, LytTR family  26.56 
 
 
251 aa  82.8  0.000000000000006  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0765  LytR/AlgR family transcriptional regulator  29.13 
 
 
247 aa  82.4  0.000000000000006  Psychrobacter cryohalolentis K5  Bacteria  normal  0.584976  normal  0.255142 
 
 
-
 
NC_009441  Fjoh_3976  LytTR family two component transcriptional regulator  28.14 
 
 
247 aa  82.4  0.000000000000006  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4386  two component transcriptional regulator, LytTR family  27.9 
 
 
260 aa  82  0.000000000000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_00400  response regulator of the LytR/AlgR family  28.35 
 
 
237 aa  82  0.000000000000009  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.132657  normal 
 
 
-
 
NC_013061  Phep_1542  LytTr DNA-binding region  26.77 
 
 
245 aa  81.6  0.00000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.300206 
 
 
-
 
NC_013730  Slin_3594  two component transcriptional regulator, LytTR family  27.78 
 
 
260 aa  80.9  0.00000000000002  Spirosoma linguale DSM 74  Bacteria  normal  0.833136  normal  0.0457058 
 
 
-
 
NC_010571  Oter_1527  LytTR family two component transcriptional regulator  26.27 
 
 
246 aa  80.5  0.00000000000002  Opitutus terrae PB90-1  Bacteria  normal  0.109257  normal 
 
 
-
 
NC_013170  Ccur_01160  response regulator of the LytR/AlgR family  28.97 
 
 
238 aa  80.5  0.00000000000003  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6582  two component transcriptional regulator, LytTR family  26.54 
 
 
250 aa  80.1  0.00000000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_2328  LytTR family two component transcriptional regulator  26.44 
 
 
255 aa  79.3  0.00000000000006  Opitutus terrae PB90-1  Bacteria  normal  0.261765  decreased coverage  0.00199939 
 
 
-
 
NC_011663  Sbal223_0059  two component transcriptional regulator, LytTR family  25.97 
 
 
243 aa  78.6  0.00000000000008  Shewanella baltica OS223  Bacteria  normal  0.182784  normal 
 
 
-
 
NC_013132  Cpin_6586  two component transcriptional regulator, LytTR family  26.7 
 
 
246 aa  78.6  0.00000000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.318104  normal 
 
 
-
 
NC_009665  Shew185_0055  LytTR family two component transcriptional regulator  28.12 
 
 
243 aa  78.6  0.00000000000009  Shewanella baltica OS185  Bacteria  normal  0.868518  n/a   
 
 
-
 
NC_008009  Acid345_0420  LytR/AlgR family transcriptional regulator  25.29 
 
 
317 aa  77.8  0.0000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0328897  normal  0.0302219 
 
 
-
 
NC_009997  Sbal195_0060  LytTR family two component transcriptional regulator  28.12 
 
 
243 aa  78.6  0.0000000000001  Shewanella baltica OS195  Bacteria  normal  0.0478076  hitchhiker  0.000497336 
 
 
-
 
NC_009052  Sbal_4299  LytTR family two component transcriptional regulator  28.12 
 
 
243 aa  78.6  0.0000000000001  Shewanella baltica OS155  Bacteria  decreased coverage  0.000001386  n/a   
 
 
-
 
NC_013501  Rmar_1860  two component transcriptional regulator, LytTR family  25.38 
 
 
266 aa  78.2  0.0000000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0469  response regulator receiver protein  25.59 
 
 
254 aa  77.8  0.0000000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01918  putative response regulator in two-component regulatory system  25.09 
 
 
275 aa  77.4  0.0000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.159199  n/a   
 
 
-
 
NC_004116  SAG1016  response regulator  28.12 
 
 
244 aa  77.8  0.0000000000002  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0480  response regulator receiver domain-containing protein  27.62 
 
 
265 aa  77.4  0.0000000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_3124  LytTr DNA-binding region  29.13 
 
 
244 aa  77  0.0000000000003  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_1323  two component transcriptional regulator, LytTR family  28.74 
 
 
237 aa  76.6  0.0000000000003  Atopobium parvulum DSM 20469  Bacteria  normal  0.0540721  normal  0.0273831 
 
 
-
 
NC_008321  Shewmr4_0057  response regulator receiver protein  25.58 
 
 
243 aa  77  0.0000000000003  Shewanella sp. MR-4  Bacteria  decreased coverage  0.0000048418  decreased coverage  0.0000000648872 
 
 
-
 
NC_008322  Shewmr7_0055  response regulator receiver protein  25.58 
 
 
243 aa  77  0.0000000000003  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000989316  hitchhiker  0.000468323 
 
 
-
 
NC_008751  Dvul_2356  response regulator receiver protein  23.17 
 
 
257 aa  77  0.0000000000003  Desulfovibrio vulgaris DP4  Bacteria  normal  0.325932  normal  0.149931 
 
 
-
 
NC_008009  Acid345_3487  LytR/AlgR family transcriptional regulator  28.63 
 
 
253 aa  76.6  0.0000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.76921  normal 
 
 
-
 
NC_008255  CHU_0254  response regulator  29.63 
 
 
251 aa  76.3  0.0000000000005  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.437869  normal 
 
 
-
 
NC_013132  Cpin_3790  two component transcriptional regulator, LytTR family  28.64 
 
 
240 aa  76.3  0.0000000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.540237  normal  0.0384587 
 
 
-
 
NC_009456  VC0395_0387  response regulator  24.59 
 
 
261 aa  75.9  0.0000000000006  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
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