| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3124 |
|---|
| Symbol | |
|---|
| ID | 8254242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3731605 |
|---|
| End bp | 3732339 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644936777 |
|---|
| Product | LytTr DNA-binding region |
|---|
| Protein accession | YP_003093382 |
|---|
| Protein GI | 255533010 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACTGA ATTGCATAGC AGTAGATGAT GAGCCACTGG CGCTGGGTTT GATCTGTAGT
TTTATAGAAC AAACACCTTT CCTGAAATTA AAGGGAAGTT TTTCGAGTGG TATAAAAGCA
CTGGAAACAT TAAATGAACA AGACATAGAC CTCATCTTTC TGGATATCCA GATGCCTGAT
CTGACTGGTC TGCAGCTGGC CAGAATGCTT GATGGCAGAT CTGGAAACAG GAGGCCCAGG
TTAATATTTA CCACTGCATT TAACAATTAT GCGCTTGAGG GCTATAAAGT GGATGCATTG
GATTACCTGT TGAAACCCTT TGATTATGAA GAATTTTTAA AGGCAGCTGA TAAGGCAAGG
GCATATGCCG AAATGCAGCA GGCTGCTGCC CTGACAGGAA GTACTGCAGA ACAGGAAGGA
TATTTATTTT TAAAAGTTGA ATATCAGCTG GTAAGGGTTG CCATAAAAGA CATTATTTAT
ATTGAGGGCT TAAAAGACTA TGTAAAAGTA TACCTGGAGC ATACCGATAA ACCTGTTTTA
ACATTAACCA GTTTAAAGGC GCTGGAACAA AAGCTTTCTC CGAAAACATT TATGCGTGTG
CACCGCTCGT ACATTGTACA ACTGGAAAAA ATAACATCGG TAACTAAAAA TGCAGTAAGC
ATTGGGGAGC TGAGCATCAG TATTGGCGAT CAGTATAAGG AAGCTTTTAA TGGGTATTTG
AGTAAGTGGT TGTAA
|
|---|
| Protein sequence | MILNCIAVDD EPLALGLICS FIEQTPFLKL KGSFSSGIKA LETLNEQDID LIFLDIQMPD
LTGLQLARML DGRSGNRRPR LIFTTAFNNY ALEGYKVDAL DYLLKPFDYE EFLKAADKAR
AYAEMQQAAA LTGSTAEQEG YLFLKVEYQL VRVAIKDIIY IEGLKDYVKV YLEHTDKPVL
TLTSLKALEQ KLSPKTFMRV HRSYIVQLEK ITSVTKNAVS IGELSISIGD QYKEAFNGYL
SKWL
|
|---|
| |