More than 300 homologs were found in PanDaTox collection
for query gene Mnod_1253 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007406  Nwi_3058  phage head-tail adaptor, putative  62 
 
 
580 aa  673    Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00943131  normal  0.0427518 
 
 
-
 
NC_010725  Mpop_2070  response regulator receiver sensor signal transduction histidine kinase  70.36 
 
 
613 aa  800    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1996  response regulator receiver sensor signal transduction histidine kinase  90.22 
 
 
584 aa  1008    Methylobacterium sp. 4-46  Bacteria  normal  0.0327436  normal  0.170409 
 
 
-
 
NC_010172  Mext_2117  histidine kinase  72.39 
 
 
631 aa  806    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0208634 
 
 
-
 
NC_009485  BBta_0711  response regulator receiver sensor signal transduction histidine kinase  62.2 
 
 
581 aa  697    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4666  response regulator receiver sensor signal transduction histidine kinase  61.94 
 
 
578 aa  684    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0095  response regulator receiver sensor signal transduction histidine kinase  61.7 
 
 
582 aa  698    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4375  response regulator receiver sensor signal transduction histidine kinase  62.84 
 
 
550 aa  664    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3684  response regulator receiver sensor signal transduction histidine kinase  62.31 
 
 
580 aa  702    Nitrobacter hamburgensis X14  Bacteria  normal  0.896547  n/a   
 
 
-
 
NC_010505  Mrad2831_3287  response regulator receiver sensor signal transduction histidine kinase  73.75 
 
 
584 aa  819    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.847642  normal 
 
 
-
 
NC_011004  Rpal_5276  response regulator receiver sensor signal transduction histidine kinase  60.89 
 
 
579 aa  687    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.606728  n/a   
 
 
-
 
NC_011757  Mchl_2394  response regulator receiver sensor signal transduction histidine kinase  72.22 
 
 
593 aa  805    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1253  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
584 aa  1165    Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0131  response regulator receiver (CheY) and unknown domain-containing protein  46.59 
 
 
337 aa  252  1e-65  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0491  response regulator receiver modulated metal dependent phosphohydrolase  42.32 
 
 
522 aa  238  2e-61  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.165576  n/a   
 
 
-
 
NC_011138  MADE_02571  response regulator  41.45 
 
 
521 aa  230  5e-59  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2561  response regulator receiver modulated metal dependent phosphohydrolase  36.47 
 
 
517 aa  225  2e-57  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00356747  n/a   
 
 
-
 
NC_007519  Dde_3114  metal dependent phosphohydrolase  38.12 
 
 
523 aa  224  4.9999999999999996e-57  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00390297  n/a   
 
 
-
 
NC_008228  Patl_4035  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  38.68 
 
 
746 aa  222  9.999999999999999e-57  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.398097  n/a   
 
 
-
 
NC_011138  MADE_03585  response regulator/GGDEF/EAL domain protein  38.24 
 
 
741 aa  221  1.9999999999999999e-56  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2012  response regulator receiver modulated metal dependent phosphohydrolase  41.69 
 
 
531 aa  218  2e-55  Shewanella baltica OS155  Bacteria  normal  0.0999069  n/a   
 
 
-
 
NC_008751  Dvul_2247  response regulator receiver modulated metal dependent phosphohydrolase  40.35 
 
 
518 aa  214  2.9999999999999995e-54  Desulfovibrio vulgaris DP4  Bacteria  normal  0.77168  normal 
 
 
-
 
NC_009052  Sbal_3786  response regulator receiver modulated metal dependent phosphohydrolase  41.08 
 
 
529 aa  214  3.9999999999999995e-54  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2366  response regulator  37.94 
 
 
525 aa  207  4e-52  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2172  response regulator receiver modulated metal dependent phosphohydrolase  36.89 
 
 
523 aa  207  6e-52  Shewanella baltica OS185  Bacteria  normal  0.0465103  n/a   
 
 
-
 
NC_009052  Sbal_2199  response regulator receiver modulated metal dependent phosphohydrolase  36.99 
 
 
523 aa  207  6e-52  Shewanella baltica OS155  Bacteria  normal  0.179718  n/a   
 
 
-
 
NC_011663  Sbal223_2212  response regulator receiver modulated metal dependent phosphohydrolase  36.89 
 
 
523 aa  207  6e-52  Shewanella baltica OS223  Bacteria  normal  0.16257  normal  0.683218 
 
 
-
 
NC_013173  Dbac_0493  response regulator receiver modulated metal dependent phosphohydrolase  40.13 
 
 
531 aa  207  6e-52  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366798  n/a   
 
 
-
 
NC_009035  Sbal_4485  hypothetical protein  36.99 
 
 
523 aa  207  6e-52  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2222  response regulator receiver modulated metal dependent phosphohydrolase  36.89 
 
 
523 aa  206  7e-52  Shewanella baltica OS195  Bacteria  normal  0.151758  normal  0.307874 
 
 
-
 
NC_008700  Sama_1789  response regulator receiver protein  37.13 
 
 
524 aa  204  3e-51  Shewanella amazonensis SB2B  Bacteria  normal  0.0101023  normal  0.210198 
 
 
-
 
NC_009831  Ssed_2209  response regulator receiver modulated metal dependent phosphohydrolase  35.36 
 
 
526 aa  203  6e-51  Shewanella sediminis HAW-EB3  Bacteria  normal  0.195398  normal 
 
 
-
 
NC_013173  Dbac_0215  response regulator receiver modulated metal dependent phosphohydrolase  38.7 
 
 
536 aa  202  9.999999999999999e-51  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0659  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  42.15 
 
 
766 aa  202  1.9999999999999998e-50  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2004  response regulator receiver modulated metal dependent phosphohydrolase  37.61 
 
 
525 aa  200  7e-50  Shewanella sp. MR-4  Bacteria  normal  0.0562345  hitchhiker  0.000000282251 
 
 
-
 
NC_008322  Shewmr7_1971  response regulator receiver modulated metal dependent phosphohydrolase  37.61 
 
 
525 aa  200  7e-50  Shewanella sp. MR-7  Bacteria  normal  0.0825869  normal  0.0109864 
 
 
-
 
NC_008577  Shewana3_2105  response regulator receiver modulated metal dependent phosphohydrolase  36.87 
 
 
525 aa  199  1.0000000000000001e-49  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00173233  normal  0.407049 
 
 
-
 
NC_008700  Sama_0496  putative diguanylate phosphodiesterase  35.24 
 
 
767 aa  196  9e-49  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.788805 
 
 
-
 
NC_010506  Swoo_2427  response regulator receiver modulated metal dependent phosphohydrolase  35.07 
 
 
521 aa  194  3e-48  Shewanella woodyi ATCC 51908  Bacteria  normal  0.219655  hitchhiker  0.000118537 
 
 
-
 
NC_009665  Shew185_2885  response regulator receiver modulated metal dependent phosphohydrolase  35.47 
 
 
513 aa  194  5e-48  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3014  response regulator receiver modulated metal dependent phosphohydrolase  35.47 
 
 
513 aa  194  5e-48  Shewanella baltica OS195  Bacteria  normal  normal  0.152382 
 
 
-
 
NC_011663  Sbal223_1491  response regulator receiver modulated metal dependent phosphohydrolase  35.47 
 
 
513 aa  193  6e-48  Shewanella baltica OS223  Bacteria  normal  0.0411849  normal  0.405552 
 
 
-
 
NC_009052  Sbal_2868  response regulator receiver modulated metal dependent phosphohydrolase  35.47 
 
 
513 aa  193  8e-48  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1361  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.67 
 
 
746 aa  192  2e-47  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_0394  response regulator/GGDEF/EAL domain-containing protein  35.11 
 
 
740 aa  190  5.999999999999999e-47  Colwellia psychrerythraea 34H  Bacteria  normal  0.273558  n/a   
 
 
-
 
NC_007954  Sden_1853  metal-dependent phosphohydrolase  36.34 
 
 
527 aa  189  1e-46  Shewanella denitrificans OS217  Bacteria  normal  0.0219327  n/a   
 
 
-
 
NC_007954  Sden_2546  metal-dependent phosphohydrolase  33.43 
 
 
515 aa  186  9e-46  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1983  response regulator receiver modulated metal dependent phosphohydrolase  35.03 
 
 
523 aa  185  2.0000000000000003e-45  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00722808  normal 
 
 
-
 
NC_008345  Sfri_2755  response regulator receiver modulated metal dependent phosphohydrolase  33.75 
 
 
520 aa  184  4.0000000000000006e-45  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3036  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  38.78 
 
 
758 aa  181  2.9999999999999997e-44  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.830853 
 
 
-
 
NC_007912  Sde_3810  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.78 
 
 
763 aa  181  4e-44  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_1019  putative response regulator  35.45 
 
 
522 aa  179  9e-44  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01215  Response regulator  34.78 
 
 
509 aa  179  9e-44  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.204793  n/a   
 
 
-
 
NC_013173  Dbac_0492  response regulator receiver modulated metal dependent phosphohydrolase  38.41 
 
 
508 aa  179  1e-43  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0844408  n/a   
 
 
-
 
NC_007643  Rru_A0553  response regulator receiver Signal transduction histidine kinase  55.23 
 
 
440 aa  169  2e-40  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.580246  n/a   
 
 
-
 
NC_009438  Sputcn32_1988  response regulator receiver modulated metal dependent phosphohydrolase  37.06 
 
 
437 aa  168  2e-40  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1780  response regulator receiver modulated metal dependent phosphohydrolase  31.27 
 
 
525 aa  167  4e-40  Shewanella sediminis HAW-EB3  Bacteria  normal  0.33037  normal 
 
 
-
 
NC_008576  Mmc1_1813  response regulator receiver modulated metal dependent phosphohydrolase  34.04 
 
 
512 aa  166  1.0000000000000001e-39  Magnetococcus sp. MC-1  Bacteria  normal  0.0479529  normal  0.434013 
 
 
-
 
NC_013061  Phep_2551  ATP-binding region ATPase domain protein  37.88 
 
 
398 aa  161  3e-38  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_1190  histidine kinase  40.71 
 
 
646 aa  156  8e-37  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0967  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.34 
 
 
744 aa  155  1e-36  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0959  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.01 
 
 
744 aa  155  2e-36  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1908  response regulator receiver modulated diguanylate cyclase  51.53 
 
 
519 aa  155  2e-36  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.11693  n/a   
 
 
-
 
NC_009052  Sbal_3403  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.01 
 
 
744 aa  155  2.9999999999999998e-36  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0933  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.01 
 
 
744 aa  154  2.9999999999999998e-36  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0868  diguanylate cyclase/phosphodiesterase  32.68 
 
 
743 aa  154  2.9999999999999998e-36  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0402  response regulator receiver sensor signal transduction histidine kinase  47.9 
 
 
398 aa  149  1.0000000000000001e-34  Desulfovibrio vulgaris DP4  Bacteria  normal  0.93747  normal  0.145713 
 
 
-
 
NC_010571  Oter_1483  integral membrane sensor signal transduction histidine kinase  39.04 
 
 
477 aa  145  1e-33  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4383  response regulator receiver modulated diguanylate phosphodiesterase  31.51 
 
 
733 aa  145  2e-33  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007901  Rfer_4413  response regulator receiver sensor signal transduction histidine kinase  25.94 
 
 
565 aa  143  8e-33  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_008751  Dvul_2880  multi-sensor signal transduction histidine kinase  48.11 
 
 
576 aa  143  9.999999999999999e-33  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0497  response regulator receiver modulated metal dependent phosphohydrolase  40.44 
 
 
432 aa  142  1.9999999999999998e-32  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_2814  GAF sensor hybrid histidine kinase  27.63 
 
 
763 aa  142  1.9999999999999998e-32  Cyanothece sp. PCC 8802  Bacteria  normal  0.155467  normal  0.302046 
 
 
-
 
NC_011726  PCC8801_3302  GAF sensor hybrid histidine kinase  27.63 
 
 
763 aa  142  1.9999999999999998e-32  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007796  Mhun_2689  multi-sensor signal transduction histidine kinase  34.94 
 
 
646 aa  139  2e-31  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.119288 
 
 
-
 
NC_011831  Cagg_0838  GAF sensor signal transduction histidine kinase  36.53 
 
 
461 aa  137  7.000000000000001e-31  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2670  histidine kinase  35.07 
 
 
352 aa  137  8e-31  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1802  GAF sensor signal transduction histidine kinase  33.22 
 
 
456 aa  136  9.999999999999999e-31  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1898  integral membrane sensor signal transduction histidine kinase  36.63 
 
 
546 aa  136  9.999999999999999e-31  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1131  response regulator receiver sensor signal transduction histidine kinase  36.4 
 
 
500 aa  135  1.9999999999999998e-30  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  36.64 
 
 
378 aa  135  1.9999999999999998e-30  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_008312  Tery_1418  GAF sensor hybrid histidine kinase  28.48 
 
 
853 aa  134  3e-30  Trichodesmium erythraeum IMS101  Bacteria  normal  0.237881  normal 
 
 
-
 
NC_011661  Dtur_0748  GAF sensor signal transduction histidine kinase  35.34 
 
 
815 aa  133  9e-30  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1491  PAS/PAC sensor hybrid histidine kinase  34.38 
 
 
696 aa  132  1.0000000000000001e-29  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.125145  n/a   
 
 
-
 
NC_009718  Fnod_1705  response regulator receiver modulated metal dependent phosphohydrolase  43.45 
 
 
471 aa  132  2.0000000000000002e-29  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0589  multi-sensor signal transduction histidine kinase  35.44 
 
 
581 aa  131  3e-29  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3937  GAF sensor signal transduction histidine kinase  38.1 
 
 
701 aa  131  3e-29  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0239  PAS/PAC sensor hybrid histidine kinase  44.75 
 
 
565 aa  130  9.000000000000001e-29  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5978  PAS/PAC sensor hybrid histidine kinase  37.71 
 
 
656 aa  130  1.0000000000000001e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.410257  normal 
 
 
-
 
NC_010717  PXO_03078  sensor histidine kinase  33.58 
 
 
678 aa  129  1.0000000000000001e-28  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1492  PAS/PAC sensor hybrid histidine kinase  33.99 
 
 
606 aa  129  2.0000000000000002e-28  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0216645  n/a   
 
 
-
 
NC_008835  BMA10229_1289  sensory box histidine kinase/response regulator  36.91 
 
 
772 aa  128  3e-28  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A2264  sensory box histidine kinase/response regulator  37.77 
 
 
771 aa  128  3e-28  Burkholderia mallei NCTC 10247  Bacteria  normal  0.87596  n/a   
 
 
-
 
NC_006349  BMAA1979  sensory box histidine kinase/response regulator  37.77 
 
 
771 aa  128  3e-28  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A3159  sensory box histidine kinase/response regulator  37.77 
 
 
771 aa  128  3e-28  Burkholderia pseudomallei 668  Bacteria  normal  0.882119  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1379  sensory box histidine kinase/response regulator  37.77 
 
 
769 aa  128  3e-28  Burkholderia pseudomallei 1710b  Bacteria  normal  0.364148  n/a   
 
 
-
 
NC_008784  BMASAVP1_1000  sensory box histidine kinase/response regulator  37.77 
 
 
771 aa  128  3e-28  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1640  PAS/PAC sensor hybrid histidine kinase  36.55 
 
 
672 aa  128  3e-28  Burkholderia sp. 383  Bacteria  normal  0.934605  normal  0.169753 
 
 
-
 
NC_010087  Bmul_5450  multi-sensor hybrid histidine kinase  34.73 
 
 
799 aa  128  3e-28  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00754974 
 
 
-
 
NC_011884  Cyan7425_3552  Cache sensor hybrid histidine kinase  34.08 
 
 
970 aa  128  3e-28  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
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