More than 300 homologs were found in PanDaTox collection
for query gene MADE_00878 on replicon NC_011138
Organism: Alteromonas macleodii 'Deep ecotype'



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011138  MADE_00878  two-component response regulator  100 
 
 		 298 aa  611  9.999999999999999e-175  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  68.81 
 
 		 295 aa  419  1e-116  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  48.34 
 
 		 303 aa  284  1.0000000000000001e-75  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  0.13601 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  46.15 
 
 		 304 aa  277  2e-73  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal  1 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  44.41 
 
 		 305 aa  263  2e-69  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  45.79 
 
 		 305 aa  263  2e-69  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  46.76 
 
 		 301 aa  262  4e-69  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  42.71 
 
 		 305 aa  258  1e-67  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.536368 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  46.2 
 
 		 301 aa  255  6e-67  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal  1 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  45.92 
 
 		 300 aa  251  1e-65  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  45.92 
 
 		 300 aa  251  1e-65  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal  1 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  42.33 
 
 		 309 aa  250  2e-65  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.15819 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  44.3 
 
 		 308 aa  248  9e-65  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  41.61 
 
 		 309 aa  247  2e-64  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  42.96 
 
 		 312 aa  241  7e-63  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  43.45 
 
 		 309 aa  241  1e-62  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal  1 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  42.86 
 
 		 309 aa  240  2e-62  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal  1 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  43.88 
 
 		 305 aa  239  4e-62  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.211273 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  42.52 
 
 		 301 aa  238  9e-62  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  39.87 
 
 		 306 aa  234  2.0000000000000002e-60  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  40.45 
 
 		 333 aa  219  5e-56  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal  1 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  39.53 
 
 		 292 aa  214  1.9999999999999998e-54  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  42.76 
 
 		 311 aa  213  2.9999999999999995e-54  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  36.86 
 
 		 312 aa  203  2e-51  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.917296 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  36.86 
 
 		 312 aa  204  2e-51  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  36.86 
 
 		 312 aa  204  2e-51  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  36.59 
 
 		 339 aa  201  9.999999999999999e-51  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  39.16 
 
 		 316 aa  201  1.9999999999999998e-50  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  35.36 
 
 		 356 aa  200  1.9999999999999998e-50  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  40.27 
 
 		 306 aa  199  6e-50  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal  1 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  41 
 
 		 308 aa  197  1.0000000000000001e-49  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal  1 
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  36.11 
 
 		 307 aa  197  2.0000000000000003e-49  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  40.14 
 
 		 302 aa  195  6e-49  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  38.61 
 
 		 336 aa  194  1e-48  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  38.32 
 
 		 349 aa  194  1e-48  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  38.43 
 
 		 297 aa  194  2e-48  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  38.08 
 
 		 328 aa  191  9e-48  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  38.44 
 
 		 353 aa  191  1e-47  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  37.13 
 
 		 361 aa  190  2.9999999999999997e-47  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  0.319975 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  33.54 
 
 		 361 aa  169  7e-41  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal  1 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  34.42 
 
 		 301 aa  157  2e-37  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  41.27 
 
 		 222 aa  145  7.0000000000000006e-34  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  50.43 
 
 		 397 aa  128  1.0000000000000001e-28  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.543575 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  49.19 
 
 		 337 aa  127  2.0000000000000002e-28  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  49.17 
 
 		 541 aa  126  5e-28  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  46.03 
 
 		 367 aa  122  7e-27  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  35.32 
 
 		 407 aa  121  9.999999999999999e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.142048 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  47.86 
 
 		 541 aa  121  9.999999999999999e-27  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.59439 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  48.36 
 
 		 395 aa  121  1.9999999999999998e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  49.18 
 
 		 437 aa  119  3.9999999999999996e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_0124  response regulator receiver Signal transduction histidine kinase  49.14 
 
 		 470 aa  118  9.999999999999999e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  48.36 
 
 		 437 aa  118  9.999999999999999e-26  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  34 
 
 		 363 aa  118  1.9999999999999998e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  47.41 
 
 		 553 aa  117  1.9999999999999998e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.914679 
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  44.88 
 
 		 384 aa  117  3e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  37.43 
 
 		 378 aa  116  3.9999999999999997e-25  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.215089 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  47.01 
 
 		 566 aa  116  5e-25  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal  1 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  45.31 
 
 		 353 aa  115  8.999999999999998e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_010506  Swoo_2978  response regulator receiver modulated metal dependent phosphohydrolase  45.8 
 
 		 369 aa  114  1.0000000000000001e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  0.806511 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  45.53 
 
 		 386 aa  115  1.0000000000000001e-24  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  42.55 
 
 		 383 aa  115  1.0000000000000001e-24  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  42.86 
 
 		 441 aa  115  1.0000000000000001e-24  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  46.51 
 
 		 200 aa  114  2.0000000000000002e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  46.51 
 
 		 202 aa  113  3e-24  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal  1 
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  42.34 
 
 		 227 aa  113  3e-24  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  47.5 
 
 		 314 aa  113  4.0000000000000004e-24  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  41.67 
 
 		 488 aa  112  6e-24  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.182398 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  43.41 
 
 		 308 aa  112  8.000000000000001e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  43.41 
 
 		 308 aa  112  8.000000000000001e-24  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  45.3 
 
 		 440 aa  112  1.0000000000000001e-23  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  43.9 
 
 		 386 aa  110  2.0000000000000002e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal  1 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  42.31 
 
 		 452 aa  110  2.0000000000000002e-23  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  47.41 
 
 		 395 aa  111  2.0000000000000002e-23  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal  1 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  47.41 
 
 		 395 aa  111  2.0000000000000002e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  49.14 
 
 		 339 aa  111  2.0000000000000002e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  46.55 
 
 		 339 aa  110  3e-23  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  41.48 
 
 		 312 aa  110  3e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  42.98 
 
 		 376 aa  110  3e-23  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_013161  Cyan8802_1510  response regulator receiver sensor signal transduction histidine kinase  42.98 
 
 		 374 aa  109  5e-23  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_4508  two component transcriptional regulator, winged helix family  40.16 
 
 		 231 aa  109  5e-23  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  29.96 
 
 		 441 aa  109  5e-23  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_009953  Sare_2277  two component transcriptional regulator  38.71 
 
 		 248 aa  109  5e-23  Salinispora arenicola CNS-205  Bacteria  normal  0.113906  normal  0.0109188 
 
 
-
 
NC_011726  PCC8801_1483  response regulator receiver sensor signal transduction histidine kinase  42.98 
 
 		 374 aa  109  5e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  45.83 
 
 		 440 aa  109  5e-23  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal  1 
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  47.01 
 
 		 338 aa  107  2e-22  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_009380  Strop_2130  response regulator receiver  36.24 
 
 		 252 aa  107  2e-22  Salinispora tropica CNB-440  Bacteria  normal  0.539517  hitchhiker  0.00279069 
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  46.15 
 
 		 338 aa  107  2e-22  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  46.15 
 
 		 338 aa  107  2e-22  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009654  Mmwyl1_0356  response regulator receiver modulated metal dependent phosphohydrolase  47.01 
 
 		 360 aa  107  2e-22  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  46.15 
 
 		 338 aa  107  2e-22  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_0860  response regulator  47.01 
 
 		 339 aa  107  3e-22  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008609  Ppro_2062  response regulator receiver protein  43.97 
 
 		 217 aa  107  3e-22  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  39.68 
 
 		 715 aa  107  4e-22  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  45.69 
 
 		 338 aa  106  4e-22  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  39.68 
 
 		 715 aa  106  4e-22  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal  1 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  44.83 
 
 		 340 aa  106  4e-22  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.129077 
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  45.69 
 
 		 338 aa  106  5e-22  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  41.88 
 
 		 348 aa  106  5e-22  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  45.69 
 
 		 338 aa  106  5e-22  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  45.69 
 
 		 338 aa  106  5e-22  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
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