More than 300 homologs were found in PanDaTox collection
for query gene Hoch_5898 on replicon NC_013440
Organism: Haliangium ochraceum DSM 14365



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013440  Hoch_5898  transcriptional regulator, LuxR family  100 
 
 
230 aa  465  9.999999999999999e-131  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_0327  transcriptional regulator, LuxR family  34.19 
 
 
341 aa  94.4  1e-18  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0338  transcriptional regulator, LuxR family  33.48 
 
 
341 aa  92.8  4e-18  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0316  LuxR family transcriptional regulator  37.21 
 
 
341 aa  91.3  1e-17  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0328  transcriptional regulator, LuxR family  37.71 
 
 
285 aa  86.7  3e-16  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0317  LuxR family transcriptional regulator  37.36 
 
 
285 aa  84.7  9e-16  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0339  transcriptional regulator, LuxR family  37.36 
 
 
285 aa  82.8  0.000000000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2106  DNA-binding transcriptional activator SdiA  32.95 
 
 
240 aa  56.2  0.0000004  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.010871 
 
 
-
 
NC_011205  SeD_A1293  DNA-binding transcriptional activator SdiA  32.95 
 
 
240 aa  56.2  0.0000004  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.746399  hitchhiker  0.0000202879 
 
 
-
 
NC_013235  Namu_2635  two component transcriptional regulator, LuxR family  38.46 
 
 
217 aa  55.8  0.0000005  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000528497  hitchhiker  0.00476816 
 
 
-
 
NC_011083  SeHA_C2165  DNA-binding transcriptional activator SdiA  32.95 
 
 
240 aa  55.8  0.0000005  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.0921825  hitchhiker  0.00000020452 
 
 
-
 
NC_011149  SeAg_B1170  DNA-binding transcriptional activator SdiA  32.95 
 
 
240 aa  55.8  0.0000005  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0141324  n/a   
 
 
-
 
NC_011080  SNSL254_A2112  DNA-binding transcriptional activator SdiA  32.95 
 
 
240 aa  55.8  0.0000005  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.722664  hitchhiker  0.0000000000000595752 
 
 
-
 
NC_007951  Bxe_A1539  two component LuxR family transcriptional regulator  43.1 
 
 
214 aa  55.1  0.0000008  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.274992 
 
 
-
 
NC_010681  Bphyt_2593  two component transcriptional regulator, LuxR family  43.1 
 
 
214 aa  55.1  0.0000009  Burkholderia phytofirmans PsJN  Bacteria  normal  0.382122  hitchhiker  0.00235574 
 
 
-
 
NC_010622  Bphy_1472  two component LuxR family transcriptional regulator  43.1 
 
 
214 aa  55.1  0.0000009  Burkholderia phymatum STM815  Bacteria  normal  normal  0.781461 
 
 
-
 
NC_007347  Reut_A1301  LuxR response regulator receiver  44.12 
 
 
210 aa  55.1  0.000001  Ralstonia eutropha JMP134  Bacteria  normal  0.549132  n/a   
 
 
-
 
NC_011894  Mnod_2117  response regulator FixJ  44.74 
 
 
205 aa  54.7  0.000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4101  two component LuxR family transcriptional regulator  38.27 
 
 
229 aa  53.9  0.000002  Polaromonas sp. JS666  Bacteria  normal  0.878116  normal 
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  45.31 
 
 
223 aa  53.1  0.000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.658241 
 
 
-
 
NC_007973  Rmet_1194  two component LuxR family transcriptional regulator  42.65 
 
 
210 aa  53.5  0.000003  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00813352  normal  0.892025 
 
 
-
 
NC_010682  Rpic_1949  two component transcriptional regulator, LuxR family  40.26 
 
 
211 aa  53.5  0.000003  Ralstonia pickettii 12J  Bacteria  normal  0.24135  normal  0.0521212 
 
 
-
 
NC_008825  Mpe_A2916  ATP-dependent transcriptional regulator-like protein protein  49.09 
 
 
905 aa  52.8  0.000004  Methylibium petroleiphilum PM1  Bacteria  normal  0.725762  normal 
 
 
-
 
NC_010322  PputGB1_2590  LuxR family transcriptional regulator  40 
 
 
263 aa  52.8  0.000005  Pseudomonas putida GB-1  Bacteria  normal  0.572263  normal  0.168073 
 
 
-
 
NC_011312  VSAL_I2858  probable CsgAB operon transcriptional regulatory protein  37.84 
 
 
215 aa  52.4  0.000006  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.256874  n/a   
 
 
-
 
NC_012793  GWCH70_0367  transcriptional regulator, LuxR family  44.78 
 
 
556 aa  52.4  0.000006  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3745  response regulator receiver protein  47.17 
 
 
203 aa  52.4  0.000006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.311585 
 
 
-
 
NC_010676  Bphyt_6179  transcriptional regulator, LuxR family  40 
 
 
267 aa  52  0.000007  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1597  response regulator transcription regulator protein  41.18 
 
 
210 aa  51.2  0.00001  Ralstonia solanacearum GMI1000  Bacteria  normal  0.395881  normal 
 
 
-
 
NC_012856  Rpic12D_1621  two component transcriptional regulator, LuxR family  38.96 
 
 
211 aa  51.6  0.00001  Ralstonia pickettii 12D  Bacteria  normal  0.171805  normal 
 
 
-
 
NC_010524  Lcho_4282  two component LuxR family transcriptional regulator  39.51 
 
 
217 aa  51.6  0.00001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012854  Rleg_6399  two component transcriptional regulator, LuxR family  43.75 
 
 
214 aa  51.2  0.00001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.139442 
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  36.25 
 
 
223 aa  51.2  0.00001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008254  Meso_2222  response regulator FixJ  38.64 
 
 
205 aa  51.2  0.00001  Chelativorans sp. BNC1  Bacteria  normal  0.0446915  n/a   
 
 
-
 
NC_010084  Bmul_1131  two component LuxR family transcriptional regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0589444  normal  0.612677 
 
 
-
 
NC_006348  BMA1723  LuxR family DNA-binding response regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0901353  n/a   
 
 
-
 
NC_010508  Bcenmc03_2157  two component LuxR family transcriptional regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1400  two component LuxR family transcriptional regulator  42.86 
 
 
216 aa  50.4  0.00002  Dechloromonas aromatica RCB  Bacteria  normal  0.973321  normal  0.0605156 
 
 
-
 
NC_010814  Glov_1561  two component transcriptional regulator, LuxR family  34.95 
 
 
199 aa  50.4  0.00002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2670  LuxR family DNA-binding response regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3087  LuxR family DNA-binding response regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2748  LuxR family DNA-binding response regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0898  two component LuxR family transcriptional regulator  41.38 
 
 
217 aa  50.8  0.00002  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000112877  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2232  LuxR family DNA-binding response regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia mallei SAVP1  Bacteria  normal  0.97455  n/a   
 
 
-
 
NC_007510  Bcep18194_A5445  two component LuxR family transcriptional regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1878  two component transcriptional regulator, LuxR family  42.86 
 
 
208 aa  50.4  0.00002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3275  response regulator FixJ  45.24 
 
 
205 aa  50.8  0.00002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I1862  LuxR family DNA-binding response regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia thailandensis E264  Bacteria  normal  0.340696  n/a   
 
 
-
 
NC_012853  Rleg_5743  two component transcriptional regulator, LuxR family  38.16 
 
 
212 aa  50.8  0.00002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1243  transcriptional regulator, LuxR family  43.94 
 
 
550 aa  50.8  0.00002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010505  Mrad2831_2579  response regulator FixJ  46.43 
 
 
205 aa  50.4  0.00002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_5938  two component LuxR family transcriptional regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.172889  n/a   
 
 
-
 
NC_009074  BURPS668_2614  LuxR family DNA-binding response regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia pseudomallei 668  Bacteria  normal  0.37823  n/a   
 
 
-
 
NC_008390  Bamb_2176  two component LuxR family transcriptional regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia ambifaria AMMD  Bacteria  normal  0.116055  n/a   
 
 
-
 
NC_008542  Bcen2424_2139  two component LuxR family transcriptional regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1505  LuxR family DNA-binding response regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2049  two component LuxR family transcriptional regulator  39.66 
 
 
212 aa  50.4  0.00002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.435361  normal 
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  50 
 
 
306 aa  50.1  0.00003  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013595  Sros_6032  response regulator receiver protein  44.07 
 
 
218 aa  50.1  0.00003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.53611  normal 
 
 
-
 
NC_007778  RPB_3850  two component LuxR family transcriptional regulator  41.07 
 
 
209 aa  50.1  0.00003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_1135  two component LuxR family transcriptional regulator  43.86 
 
 
201 aa  50.1  0.00003  Rhodoferax ferrireducens T118  Bacteria  normal  0.564331  n/a   
 
 
-
 
NC_007908  Rfer_3082  two component LuxR family transcriptional regulator  43.86 
 
 
201 aa  50.4  0.00003  Rhodoferax ferrireducens T118  Bacteria  normal  0.0470395  n/a   
 
 
-
 
NC_007925  RPC_3796  two component LuxR family transcriptional regulator  41.07 
 
 
209 aa  50.4  0.00003  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  42.37 
 
 
214 aa  50.1  0.00003  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal 
 
 
-
 
NC_007958  RPD_1499  LuxR family two component transcriptional regulator  37.18 
 
 
209 aa  50.1  0.00003  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1317  response regulator  37.7 
 
 
220 aa  50.1  0.00003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  40.35 
 
 
218 aa  49.7  0.00003  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  40.35 
 
 
218 aa  49.7  0.00003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0530  two component LuxR family transcriptional regulator  44.64 
 
 
211 aa  49.7  0.00004  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0686  two component LuxR family transcriptional regulator  42.86 
 
 
203 aa  49.7  0.00004  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  40.35 
 
 
218 aa  49.7  0.00004  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4471  transcriptional regulator, LuxR family  45.16 
 
 
680 aa  49.7  0.00004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.129361 
 
 
-
 
NC_007348  Reut_B4164  LuxR transcriptional regulator  48.21 
 
 
960 aa  49.3  0.00005  Ralstonia eutropha JMP134  Bacteria  normal  0.950161  n/a   
 
 
-
 
NC_007511  Bcep18194_B3046  ATP-dependent transcription regulator LuxR  41.82 
 
 
922 aa  49.3  0.00005  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  54 
 
 
225 aa  49.3  0.00005  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_010515  Bcenmc03_4346  ATP-dependent transcription regulator LuxR  41.82 
 
 
921 aa  49.3  0.00006  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.815962  normal 
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  46.94 
 
 
306 aa  48.9  0.00006  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  42.11 
 
 
219 aa  48.9  0.00006  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0400  two component LuxR family transcriptional regulator  44.83 
 
 
202 aa  48.9  0.00006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.331086  normal 
 
 
-
 
NC_010571  Oter_1700  two component LuxR family transcriptional regulator  37.18 
 
 
213 aa  48.9  0.00006  Opitutus terrae PB90-1  Bacteria  normal  normal  0.226192 
 
 
-
 
NC_008061  Bcen_5027  ATP-dependent transcription regulator LuxR  41.82 
 
 
921 aa  49.3  0.00006  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.381332  n/a   
 
 
-
 
NC_008543  Bcen2424_5833  ATP-dependent transcription regulator LuxR  41.82 
 
 
921 aa  49.3  0.00006  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1646  two component LuxR family transcriptional regulator  44.64 
 
 
219 aa  48.9  0.00006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.92254 
 
 
-
 
NC_010501  PputW619_3824  LuxR family transcriptional regulator  40.28 
 
 
267 aa  48.9  0.00007  Pseudomonas putida W619  Bacteria  decreased coverage  0.00247699  normal  0.327982 
 
 
-
 
NC_007908  Rfer_1486  two component LuxR family transcriptional regulator  46.15 
 
 
214 aa  48.5  0.00007  Rhodoferax ferrireducens T118  Bacteria  normal  0.108748  n/a   
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  47.06 
 
 
302 aa  48.9  0.00007  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  37.04 
 
 
227 aa  48.9  0.00007  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_013510  Tcur_0154  two component transcriptional regulator, LuxR family  42.37 
 
 
244 aa  48.5  0.00008  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0091  regulatory protein LuxR  49.02 
 
 
410 aa  48.5  0.00008  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  52 
 
 
236 aa  48.5  0.00008  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_013061  Phep_2289  regulatory protein LuxR  44.44 
 
 
151 aa  48.5  0.00008  Pedobacter heparinus DSM 2366  Bacteria  normal  hitchhiker  0.00301716 
 
 
-
 
NC_009379  Pnuc_0732  response regulator receiver protein  41.38 
 
 
215 aa  48.5  0.00008  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.298469  n/a   
 
 
-
 
NC_010498  EcSMS35_1266  DNA-binding transcriptional activator SdiA  28.75 
 
 
240 aa  48.5  0.00009  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.00315864  hitchhiker  0.00193945 
 
 
-
 
NC_010658  SbBS512_E1044  DNA-binding transcriptional activator SdiA  28.75 
 
 
240 aa  48.5  0.00009  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.000369866  n/a   
 
 
-
 
NC_009801  EcE24377A_2150  DNA-binding transcriptional activator SdiA  28.75 
 
 
240 aa  48.5  0.00009  Escherichia coli E24377A  Bacteria  hitchhiker  0.000560081  n/a   
 
 
-
 
NC_010531  Pnec_0704  two component transcriptional regulator, LuxR family  41.38 
 
 
214 aa  48.5  0.00009  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.753304  normal  0.399327 
 
 
-
 
NC_010506  Swoo_2997  LuxR family transcriptional regulator  44.62 
 
 
250 aa  48.5  0.00009  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.665573 
 
 
-
 
NC_009675  Anae109_0915  two component LuxR family transcriptional regulator  53.57 
 
 
202 aa  48.1  0.0001  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.000299753  normal 
 
 
-
 
NC_011353  ECH74115_2690  DNA-binding transcriptional activator SdiA  28.75 
 
 
240 aa  47.8  0.0001  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.0029365  normal  0.0383701 
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  45.61 
 
 
213 aa  48.1  0.0001  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal 
 
 
-
 
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