More than 300 homologs were found in PanDaTox collection
for query gene Phep_2289 on replicon NC_013061
Organism: Pedobacter heparinus DSM 2366



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013061  Phep_2289  regulatory protein LuxR  100 
 
 
151 aa  296  7e-80  Pedobacter heparinus DSM 2366  Bacteria  normal  hitchhiker  0.00301716 
 
 
-
 
NC_008347  Mmar10_0333  LuxR family transcriptional regulator  37.78 
 
 
141 aa  102  2e-21  Maricaulis maris MCS10  Bacteria  normal  0.800894  normal  0.0115404 
 
 
-
 
NC_008009  Acid345_2902  LuxR family transcriptional regulator  33.11 
 
 
153 aa  96.7  9e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2814  LuxR family transcriptional regulator  32.88 
 
 
146 aa  83.2  0.000000000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.0940527 
 
 
-
 
NC_010338  Caul_1533  LuxR family transcriptional regulator  32.87 
 
 
137 aa  81.3  0.000000000000004  Caulobacter sp. K31  Bacteria  normal  0.717435  normal  0.7082 
 
 
-
 
NC_013525  Tter_0530  transcriptional regulator, LuxR family  36.08 
 
 
217 aa  75.5  0.0000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_5428  two component transcriptional regulator, LuxR family  53.45 
 
 
201 aa  71.2  0.000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358603 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  46.77 
 
 
214 aa  67.8  0.00000000005  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2449  two component transcriptional regulator, LuxR family  39.33 
 
 
220 aa  67.8  0.00000000005  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_011831  Cagg_2575  ATP-dependent transcriptional regulator, MalT-like, LuxR family  49.18 
 
 
917 aa  67.4  0.00000000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  53.97 
 
 
210 aa  67  0.00000000009  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0857  two component transcriptional regulator, LuxR family  36.59 
 
 
219 aa  65.5  0.0000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0762303  normal 
 
 
-
 
NC_009972  Haur_1995  ATP-dependent transcription regulator LuxR  43.42 
 
 
1019 aa  66.2  0.0000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.686742  n/a   
 
 
-
 
NC_011368  Rleg2_5436  transcriptional regulator, LuxR family  51.56 
 
 
959 aa  66.2  0.0000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00800009 
 
 
-
 
NC_011725  BCB4264_A1495  DNA-binding response regulator  58.49 
 
 
210 aa  65.9  0.0000000002  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
NC_013530  Xcel_0239  two component transcriptional regulator, LuxR family  36.9 
 
 
230 aa  65.1  0.0000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  39.76 
 
 
239 aa  65.1  0.0000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  47.17 
 
 
234 aa  65.1  0.0000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013216  Dtox_3280  two component transcriptional regulator, LuxR family  56.6 
 
 
223 aa  64.7  0.0000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2079  two component transcriptional regulator, LuxR family  52.54 
 
 
212 aa  64.3  0.0000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_004116  SAG0322  DNA-binding response regulator  50 
 
 
213 aa  64.7  0.0000000005  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_1387  DNA-binding response regulator  53.23 
 
 
214 aa  64.3  0.0000000005  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.00141106  n/a   
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  49.06 
 
 
226 aa  63.9  0.0000000006  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013757  Gobs_1986  two component transcriptional regulator, LuxR family  52.94 
 
 
226 aa  63.9  0.0000000006  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  50.94 
 
 
226 aa  63.9  0.0000000007  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013595  Sros_8800  response regulator receiver protein  56 
 
 
215 aa  63.5  0.0000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  0.752334  normal 
 
 
-
 
NC_008527  LACR_0967  DNA-binding response regulator  59.62 
 
 
209 aa  63.5  0.0000000008  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.598364  n/a   
 
 
-
 
NC_008697  Noca_4896  response regulator receiver  50 
 
 
215 aa  63.5  0.0000000008  Nocardioides sp. JS614  Bacteria  normal  0.446448  normal  0.220667 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  50 
 
 
214 aa  63.5  0.0000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_011729  PCC7424_0164  two component transcriptional regulator, LuxR family  39.18 
 
 
234 aa  63.5  0.0000000009  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0441129 
 
 
-
 
NC_014248  Aazo_2840  LuxR family two component transcriptional regulator  41.03 
 
 
238 aa  63.5  0.0000000009  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  42.86 
 
 
210 aa  63.5  0.000000001  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  42.86 
 
 
210 aa  63.5  0.000000001  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  42.86 
 
 
210 aa  63.5  0.000000001  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  42.86 
 
 
210 aa  63.5  0.000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_006274  BCZK1321  response regulator  42.86 
 
 
210 aa  63.5  0.000000001  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  52.46 
 
 
223 aa  63.2  0.000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  42.86 
 
 
210 aa  63.5  0.000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  43.24 
 
 
210 aa  63.5  0.000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_0404  two component transcriptional regulator, LuxR family  52 
 
 
218 aa  63.5  0.000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0987348  normal 
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  42.86 
 
 
210 aa  63.5  0.000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_013595  Sros_5499  response regulator receiver protein  50 
 
 
213 aa  63.2  0.000000001  Streptosporangium roseum DSM 43021  Bacteria  decreased coverage  0.00659712  normal  0.108677 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  49.06 
 
 
227 aa  63.2  0.000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  35.29 
 
 
215 aa  62.8  0.000000001  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013739  Cwoe_0253  two component transcriptional regulator, LuxR family  39.53 
 
 
218 aa  62.8  0.000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.649746 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  53.85 
 
 
220 aa  63.2  0.000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  34.34 
 
 
226 aa  63.2  0.000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  42.86 
 
 
210 aa  63.5  0.000000001  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  42.86 
 
 
210 aa  63.5  0.000000001  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  43.21 
 
 
224 aa  63.5  0.000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal 
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  49.21 
 
 
221 aa  63.2  0.000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.133182 
 
 
-
 
NC_009972  Haur_3477  ATP-dependent transcription regulator LuxR  55.36 
 
 
877 aa  62.4  0.000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18530  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  46.77 
 
 
209 aa  62.8  0.000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_02970  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  27.86 
 
 
227 aa  62  0.000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.611463  n/a   
 
 
-
 
NC_013172  Bfae_00310  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  51.61 
 
 
213 aa  62.4  0.000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0676  two component transcriptional regulator, LuxR family  52 
 
 
215 aa  62.8  0.000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  50 
 
 
213 aa  62.4  0.000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal 
 
 
-
 
NC_007492  Pfl01_4706  ATP-dependent transcription regulator LuxR  49.18 
 
 
911 aa  62.4  0.000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.157543 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  45.9 
 
 
222 aa  62.8  0.000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  40.58 
 
 
242 aa  62  0.000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  53.23 
 
 
211 aa  62.4  0.000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  48.08 
 
 
221 aa  62.4  0.000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_009439  Pmen_3658  regulatory protein, LuxR  43.21 
 
 
914 aa  62.8  0.000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  45.9 
 
 
223 aa  62.8  0.000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  52.54 
 
 
208 aa  61.6  0.000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4422  ATP-dependent transcription regulator LuxR  37.37 
 
 
905 aa  61.6  0.000000003  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  49.06 
 
 
228 aa  61.6  0.000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  52.63 
 
 
227 aa  61.6  0.000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_014158  Tpau_1989  two component transcriptional regulator, LuxR family  48.28 
 
 
229 aa  61.6  0.000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  53.85 
 
 
221 aa  61.2  0.000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0907  ATP-dependent transcription regulator LuxR  41.67 
 
 
850 aa  61.2  0.000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C6753  ATP-dependent transcription regulator LuxR  39.76 
 
 
932 aa  61.2  0.000000004  Burkholderia sp. 383  Bacteria  normal  normal  0.449288 
 
 
-
 
NC_013159  Svir_38740  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  31.03 
 
 
250 aa  61.6  0.000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  34.78 
 
 
220 aa  61.6  0.000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_012669  Bcav_2482  two component transcriptional regulator, LuxR family  42.19 
 
 
208 aa  61.2  0.000000005  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0211915  normal  0.642006 
 
 
-
 
NC_008825  Mpe_A0892  ATP-dependent transcriptional regulator-like protein protein  44.26 
 
 
896 aa  61.2  0.000000005  Methylibium petroleiphilum PM1  Bacteria  normal  0.311866  normal 
 
 
-
 
NC_009972  Haur_3654  two component LuxR family transcriptional regulator  44.29 
 
 
221 aa  60.8  0.000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000210563  n/a   
 
 
-
 
NC_009439  Pmen_1136  regulatory protein, LuxR  55.36 
 
 
868 aa  60.8  0.000000006  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.87643 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  28.69 
 
 
229 aa  60.8  0.000000007  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_009380  Strop_1030  regulatory protein, LuxR  43.55 
 
 
225 aa  60.5  0.000000007  Salinispora tropica CNB-440  Bacteria  normal  0.210652  normal 
 
 
-
 
NC_011884  Cyan7425_4554  two component transcriptional regulator, LuxR family  45.33 
 
 
245 aa  60.5  0.000000007  Cyanothece sp. PCC 7425  Bacteria  normal  0.376132  normal  0.833141 
 
 
-
 
NC_011312  VSAL_I2858  probable CsgAB operon transcriptional regulatory protein  53.7 
 
 
215 aa  60.8  0.000000007  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.256874  n/a   
 
 
-
 
NC_013947  Snas_3811  two component transcriptional regulator, LuxR family  46.15 
 
 
206 aa  60.8  0.000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00252848 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.62 
 
 
236 aa  60.8  0.000000007  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  49.06 
 
 
230 aa  60.8  0.000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1820  two component transcriptional regulator, LuxR family  56 
 
 
216 aa  60.5  0.000000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.677493  normal  0.0923177 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  41.25 
 
 
215 aa  60.5  0.000000008  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  41.25 
 
 
215 aa  60.5  0.000000008  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4382  regulatory protein, LuxR  49.18 
 
 
1006 aa  60.5  0.000000008  Nocardioides sp. JS614  Bacteria  normal  0.172901  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  40 
 
 
224 aa  60.5  0.000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  41.25 
 
 
215 aa  60.5  0.000000008  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0993  regulatory protein, LuxR  49.18 
 
 
920 aa  60.1  0.000000009  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.962183  normal 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  53.85 
 
 
239 aa  60.5  0.000000009  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013739  Cwoe_2525  two component transcriptional regulator, LuxR family  30.89 
 
 
215 aa  60.5  0.000000009  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  34.74 
 
 
228 aa  60.5  0.000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_012669  Bcav_3028  two component transcriptional regulator, LuxR family  34.04 
 
 
225 aa  60.5  0.000000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.211566  decreased coverage  0.0000266978 
 
 
-
 
NC_005945  BAS2109  LuxR family DNA-binding response regulator  38.3 
 
 
209 aa  60.1  0.00000001  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4115  response regulator receiver protein  45.45 
 
 
216 aa  60.1  0.00000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.071707  normal  0.0608108 
 
 
-
 
NC_008463  PA14_41800  putative transcriptional regulator  37.36 
 
 
907 aa  59.7  0.00000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_2290  DNA-binding response regulator, LuxR family  38.3 
 
 
209 aa  60.1  0.00000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000736213 
 
 
-
 
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