| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0892 |
|---|
| Symbol | |
|---|
| ID | 4787215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 937312 |
|---|
| End bp | 940002 |
|---|
| Gene Length | 2691 bp |
|---|
| Protein Length | 896 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640089453 |
|---|
| Product | ATP-dependent transcriptional regulator-like protein protein |
|---|
| Protein accession | YP_001020089 |
|---|
| Protein GI | 124266085 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2909] ATP-dependent transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.311866 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGTCA GCACCCACAA GCTGTTCGCC CCGCCGATCT ACCCCGGCGC CGTGCGTCGC
CGCGTCATCC TCGACCGCGT GCTGCAGGAC AACAGCCTGC GCGTCACGGT GCTGCAGGGC
CCGGCCGGGC ATGGCAAGTC GACCACGCTG CAGCAGATCA AGACCGCGCA CGAGGCGCGC
GGCTGGCGCA CCGCCTGGCT CACGCTCGAC GACGCCGACA ACGACCCGCG CCGCTTCGAG
TCGCACATGC GCGCGTTGGT GGGGCTGATG CGCGGCGGCG CCGCGCATCC GGAGGCCGAC
GCGGCCTGGG TCGGGGACGC GCCACCCGAC CTGGCGAACT GGATGCTCGA CAGCCTGTCG
GGCATGGAGA CCCACGCGTC GATCTTCCTC GACGAATTCC AGGCGCTGCG CAACGACGCC
ATCCTGCGCT TCTTCCGCTT CCTGCTGTCG CGCCTGCCGG CCCATGCGCA CGTCTTCATC
GGTTCGCGCT CGCTGCCGGA GATCGGGCTG GCGACGCTGC TGGTCAACCG CATGGCGACG
GTGCTGCGCG CCGACGACCT GCGCTTCACG CCCGGCGAAG TGACGCAGTT CTTCGCCGAG
TCGAAGGACC TGCGGGTCAG CGCCGAGGAA GTGGGCGCGA TCTACCGGCG CACCGAGGGC
TGGCCGGCCG GCCTGCAGCT GTTCCGTCTC GGCCTCGGCA GCCCGGAGGT GCGCACCTCG
CTGGTCGATC CCGAGGACCA TGGCCCGCGC GAGCTGGCCG AGTACCTGAC CGACAACGTG
GTCACGCTGC AGTCGCCGCG CATCCAGGAG TTCCTGTTCA AGACCTCGCT GCTGCGGCGC
CTGTCGGCGC CGCTGTGCGC GGCCGTGACC GGCTTCGACG ACGCGCAGGA CATCCTGGAG
CAGCTCGAGC GCTCCGGCCT GTTCGTCCGT GCGCTCGACT CCGACAACCG CTGGTTCAAG
TACCACGGCC TGTTCTCGAG CTTCCTCGCC GACAGCCTGC ACCGCAGCTC CGAACTCGAG
GTGGTCAGCG TGCACGAGCG CGCGGCGCGC TGGTACCTGG CGCAGCACCT GCCCGAGGAG
GCGATCTACC ACGCGCTGTC CTGCCGCAAT TTCTCGCTCG CCGCAGCGAT CCTGAGCGAG
TGGTCTTCGC GGCTGATCTC CAACGCCGAG CTGATCACGC TCGAGCGCTG GTATGACCGG
CTGCCGTTCG ACCACGTGGC GAACCGCCCG GTGCTGGCGA TCAAGGCGGC CTACTCGCTG
ATGTTCCTGC GCCGGCGCGC CAAGCTGCGG CCGCTGGTGG ACCTGATGAA CCAGCACGCC
GGCTGCGGCG ACATCCTGCA GACCACCAGT CCCGACCTGT GCCGGGCGAT GGCCCGCCTG
CTGTTCGAGG ACGACCTGCA CGCGGCACTC GACATCATCG ATCGCCCCGA GGTGCTCCAG
CAGGAGGTCA GCGGCTTCCC GGCCTTCGAG CTCGGCGCCG CGTGCAACGT GCTGAGCTTC
GGCCGCATCG CCGCCGGCGA CTTCGAGGGC GCACGCAAGT CGCTGATGCT GGCTCGCGCG
CACAGCGAAC GCGGCGCAGG CTCCTTCGTG ATGGGCTACA CCACGGCCGT CAGCGGCGCG
CGCCTGATCG TGCAGGGCAA GCTGAACGAG GCGATCGAGC GCTACCGCGC CGACATGCTG
GCGCAGCACG CACCGCTCGA CAAGTCGTTC GCGCCGGCGG TGATGGCCGC CGCGCAGATC
TGGGCGCTCT ACGAGGCCAA CGACCTGGCG GCGCTGGAGC CGCTGTGCGC GCAGTTCCAG
CGCGGCATTT CCGAGTGCGT CACGCTCGAT TTCATCGCGC TGGCCTATGT GTCGATCTCG
CGCATGCACG ACGCCCGAGG TCGCTCGGCC GAGGCGCAGG AAGTGCTCGA AGAGCTCGAG
CGCATGGGCC ACGACAGCCA TCTCGACCGG CTGGTTTCGC TGGCCGACTG GGAGCGCGTG
CGCCGCGCGG TGCTGGCCGG TGAGCTCGAC CGCGCCACGG CACTGGCCAA GCGCATCGCA
CCGGTCTGTC CGCCGCTGAA CCCGCAGTGG ATCTACATGG CCGACGACAT GGAGGGCGAA
GCCTTCGGTC GCATCCGCCT CGCCATCGCC CACCACGACC ACGCGCTGGC CTCGCAGTTG
ATCGCGCGCG AGCGTGCGCG CCAGACCGGA CGCGTCTACC GCGACATCCG GCTGTACGTG
TTCGAAGCCC TGATGCTCCA CGACAAGGGC TCGCCCAACG GCGCCCATCG CAGCCTGCGC
AAGGCGCTGC AGCTGGCGCG GCCGGGCCGC TACGTGCGTT GCTTCCTCGA CGAGGGCCGC
GCGATCGTGT CGATGCTGCG CGAGGAGTAC CAGCACTTCC TGCAGTCCGC CGCCGATGGC
CAGGCGCCGG CGGACCCGGA CCGCGACTTC ATCGAGCTGC TGCTGGCCGC ATCGGGCACC
GACCTCGGCC AGCCGCGCGG CCGCCATCAC CTCACCGACC CGCTGTCGGA GCGCGAGAAG
GAGATGCTGC AGTTCCTGGC CAACGGCGTG GCCAACAAGG AGATCGCCTC GCGGCTGTTC
GTCTCCGAGA ACACCGTCAA GTTCCACCTG AAGAACATCT ACTCCAAGCT CGGCGTCAGC
GGTCGCGTGC AGGCGATCAA CGCGGCGCGG ACCTTGCGGC TGGTGTCCTG A
|
|---|
| Protein sequence | MEVSTHKLFA PPIYPGAVRR RVILDRVLQD NSLRVTVLQG PAGHGKSTTL QQIKTAHEAR
GWRTAWLTLD DADNDPRRFE SHMRALVGLM RGGAAHPEAD AAWVGDAPPD LANWMLDSLS
GMETHASIFL DEFQALRNDA ILRFFRFLLS RLPAHAHVFI GSRSLPEIGL ATLLVNRMAT
VLRADDLRFT PGEVTQFFAE SKDLRVSAEE VGAIYRRTEG WPAGLQLFRL GLGSPEVRTS
LVDPEDHGPR ELAEYLTDNV VTLQSPRIQE FLFKTSLLRR LSAPLCAAVT GFDDAQDILE
QLERSGLFVR ALDSDNRWFK YHGLFSSFLA DSLHRSSELE VVSVHERAAR WYLAQHLPEE
AIYHALSCRN FSLAAAILSE WSSRLISNAE LITLERWYDR LPFDHVANRP VLAIKAAYSL
MFLRRRAKLR PLVDLMNQHA GCGDILQTTS PDLCRAMARL LFEDDLHAAL DIIDRPEVLQ
QEVSGFPAFE LGAACNVLSF GRIAAGDFEG ARKSLMLARA HSERGAGSFV MGYTTAVSGA
RLIVQGKLNE AIERYRADML AQHAPLDKSF APAVMAAAQI WALYEANDLA ALEPLCAQFQ
RGISECVTLD FIALAYVSIS RMHDARGRSA EAQEVLEELE RMGHDSHLDR LVSLADWERV
RRAVLAGELD RATALAKRIA PVCPPLNPQW IYMADDMEGE AFGRIRLAIA HHDHALASQL
IARERARQTG RVYRDIRLYV FEALMLHDKG SPNGAHRSLR KALQLARPGR YVRCFLDEGR
AIVSMLREEY QHFLQSAADG QAPADPDRDF IELLLAASGT DLGQPRGRHH LTDPLSEREK
EMLQFLANGV ANKEIASRLF VSENTVKFHL KNIYSKLGVS GRVQAINAAR TLRLVS
|
|---|
| |