| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0898 |
|---|
| Symbol | |
|---|
| ID | 5189980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 953276 |
|---|
| End bp | 953929 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640590730 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001271498 |
|---|
| Protein GI | 148544128 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00000112877 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAGAG TACTTGTGGC GGATAATTAT CCAATCATTC GAATGGCAGT TAAAAATCTG
GTTGAACAAC TAGATAATTT TAAAGTAATT GCTGAAGAAG CAACCGGAAT AGATGCCTCA
TTGCGGGCTG AACAAGGTGA CATTGATATC ATTATTATGG ATTTAGCGAT GCCACCTGGT
GAAAATGGTC TGATCACAAT CAAAAGAATT CATGAACATT TCCCTAACAC CAAAATTATT
ATTTTTTCTT CTCGTAATGA ACCTCAATAC ATCAATCAGG CAATTTATAA TGGCGCAAAT
AGCTATATCC TTAAAAGCTC CTCTCCAAAA GAACTAGTTC ATGCCCTAAG ACACGCTATT
AATGGTGAAA AATACTTAGA CAATAATATT ATGGTAACGA AGAAAGATTT ATTAGTTATC
AAAGGCGGTT CTCCGCACTT CGATTTAGGA AATTACGTTG CTCTTTCGAA ACGTGAGCAA
GAAATCTTAC CGTTAATTGT TCTCGGATAT ACTAACAAAG AAATTGCTAC TAAGATGTTT
ATATCCCCTA AAACTGTTGA AGCCCATAAG ACAAAGATTA TGCAAAAATT AAACCTTGCT
TCACACGCAG AACTTCTCCA CTATGCAGTT AAACATCGAT TAGTGGACTT ATAA
|
|---|
| Protein sequence | MYRVLVADNY PIIRMAVKNL VEQLDNFKVI AEEATGIDAS LRAEQGDIDI IIMDLAMPPG
ENGLITIKRI HEHFPNTKII IFSSRNEPQY INQAIYNGAN SYILKSSSPK ELVHALRHAI
NGEKYLDNNI MVTKKDLLVI KGGSPHFDLG NYVALSKREQ EILPLIVLGY TNKEIATKMF
ISPKTVEAHK TKIMQKLNLA SHAELLHYAV KHRLVDL
|
|---|
| |