More than 300 homologs were found in PanDaTox collection
for query gene Francci3_4048 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_4048  response regulator receiver protein  100 
 
 
241 aa  479  1e-134  Frankia sp. CcI3  Bacteria  normal  0.916406  normal 
 
 
-
 
NC_009921  Franean1_0667  response regulator receiver protein  90 
 
 
214 aa  375  1e-103  Frankia sp. EAN1pec  Bacteria  normal  0.0467725  normal  0.629252 
 
 
-
 
NC_013510  Tcur_2645  response regulator receiver protein  75.57 
 
 
215 aa  201  8e-51  Thermomonospora curvata DSM 43183  Bacteria  normal  0.492308  n/a   
 
 
-
 
NC_013595  Sros_0400  response regulator receiver protein  70.23 
 
 
210 aa  188  7e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0184  response regulator receiver protein  70.99 
 
 
210 aa  187  1e-46  Thermobispora bispora DSM 43833  Bacteria  normal  0.186811  normal  0.929424 
 
 
-
 
NC_013947  Snas_1054  response regulator receiver protein  67.44 
 
 
188 aa  179  4e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0143  response regulator receiver protein  66.67 
 
 
206 aa  176  2e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4522  response regulator receiver protein  61.29 
 
 
185 aa  176  3e-43  Salinispora arenicola CNS-205  Bacteria  normal  0.171395  decreased coverage  0.000607149 
 
 
-
 
NC_014211  Ndas_5203  response regulator receiver protein  66.41 
 
 
212 aa  176  3e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.372482 
 
 
-
 
NC_009380  Strop_4102  response regulator receiver  60 
 
 
185 aa  172  5e-42  Salinispora tropica CNB-440  Bacteria  normal  normal  0.668495 
 
 
-
 
NC_007333  Tfu_0285  response regulator receiver  66.67 
 
 
206 aa  171  1e-41  Thermobifida fusca YX  Bacteria  normal  0.102424  n/a   
 
 
-
 
NC_011729  PCC7424_3765  multi-sensor signal transduction histidine kinase  52.69 
 
 
562 aa  169  3e-41  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.13531 
 
 
-
 
NC_007413  Ava_4783  PAS/PAC sensor hybrid histidine kinase  64.06 
 
 
680 aa  166  2e-40  Anabaena variabilis ATCC 29413  Bacteria  normal  0.302794  normal 
 
 
-
 
NC_009253  Dred_1269  signal transduction histidine kinase, nitrogen specific, NtrB  55.1 
 
 
509 aa  163  2.0000000000000002e-39  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3549  multi-sensor hybrid histidine kinase  51.41 
 
 
702 aa  159  5e-38  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_3007  signal transduction histidine kinase, nitrogen specific, NtrB  48.39 
 
 
507 aa  154  9e-37  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.738719  normal 
 
 
-
 
NC_011884  Cyan7425_3767  response regulator receiver sensor hybrid histidine kinase  56.34 
 
 
587 aa  148  8e-35  Cyanothece sp. PCC 7425  Bacteria  normal  0.634012  normal 
 
 
-
 
NC_013216  Dtox_3783  histidine kinase  48 
 
 
544 aa  144  9e-34  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.401083  normal 
 
 
-
 
NC_010505  Mrad2831_3211  PAS/PAC sensor hybrid histidine kinase  55.81 
 
 
696 aa  144  2e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.7085  normal 
 
 
-
 
NC_010511  M446_6442  multi-sensor hybrid histidine kinase  54.93 
 
 
688 aa  143  2e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.381857  normal 
 
 
-
 
NC_013440  Hoch_2075  response regulator receiver sensor hybrid histidine kinase  45.36 
 
 
572 aa  142  5e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2235  multi-sensor signal transduction histidine kinase  50.7 
 
 
716 aa  141  8e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.530022  normal  0.014643 
 
 
-
 
NC_013132  Cpin_0324  response regulator receiver sensor signal transduction histidine kinase  55.47 
 
 
424 aa  141  9.999999999999999e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.046409  normal 
 
 
-
 
NC_010172  Mext_1672  PAS sensor protein  52.11 
 
 
695 aa  139  3e-32  Methylobacterium extorquens PA1  Bacteria  normal  0.487392  normal 
 
 
-
 
NC_011757  Mchl_1990  multi-sensor hybrid histidine kinase  52.11 
 
 
695 aa  139  3.9999999999999997e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0019  response regulator receiver modulated diguanylate cyclase  53.97 
 
 
341 aa  138  7.999999999999999e-32  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0416556  n/a   
 
 
-
 
NC_013037  Dfer_0394  response regulator receiver sensor signal transduction histidine kinase  41.85 
 
 
531 aa  134  9.999999999999999e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.549141 
 
 
-
 
NC_008709  Ping_3722  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  46.58 
 
 
727 aa  133  3e-30  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3338  response regulator receiver sensor signal transduction histidine kinase  47.62 
 
 
526 aa  132  3.9999999999999996e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.00782598 
 
 
-
 
NC_013730  Slin_1036  multi-sensor signal transduction histidine kinase  46.84 
 
 
527 aa  132  6e-30  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1135  PAS/PAC sensor hybrid histidine kinase  53.44 
 
 
716 aa  131  7.999999999999999e-30  Opitutus terrae PB90-1  Bacteria  normal  normal  0.749109 
 
 
-
 
NC_007947  Mfla_2590  response regulator receiver sensor signal transduction histidine kinase  51.94 
 
 
405 aa  130  2.0000000000000002e-29  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.413696 
 
 
-
 
NC_009831  Ssed_1645  hypothetical protein  49.61 
 
 
344 aa  129  3e-29  Shewanella sediminis HAW-EB3  Bacteria  normal  0.176846  normal 
 
 
-
 
NC_009439  Pmen_3647  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  48.28 
 
 
715 aa  129  4.0000000000000003e-29  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_4121  multi-sensor signal transduction histidine kinase  51.18 
 
 
712 aa  129  6e-29  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.6651  n/a   
 
 
-
 
NC_011891  A2cp1_4275  multi-sensor signal transduction histidine kinase  51.18 
 
 
712 aa  129  6e-29  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1944  signal transduction histidine kinase  46.3 
 
 
507 aa  128  8.000000000000001e-29  Chelativorans sp. BNC1  Bacteria  normal  0.0183597  n/a   
 
 
-
 
NC_009439  Pmen_0172  response regulator receiver sensor signal transduction histidine kinase  46.15 
 
 
395 aa  128  9.000000000000001e-29  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_4252  multi-sensor signal transduction histidine kinase  51.18 
 
 
712 aa  128  1.0000000000000001e-28  Anaeromyxobacter sp. K  Bacteria  normal  0.374039  n/a   
 
 
-
 
NC_009441  Fjoh_3355  response regulator receiver sensor signal transduction histidine kinase  42.21 
 
 
405 aa  127  2.0000000000000002e-28  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2021  multi-sensor signal transduction histidine kinase  46.62 
 
 
1516 aa  126  3e-28  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008576  Mmc1_3396  PAS/PAC sensor hybrid histidine kinase  45.27 
 
 
927 aa  125  4.0000000000000003e-28  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2145  response regulator receiver sensor signal transduction histidine kinase  46.88 
 
 
408 aa  125  5e-28  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.001377 
 
 
-
 
NC_011984  Avi_9098  bacteriophytochrome protein  49.61 
 
 
378 aa  125  5e-28  Agrobacterium vitis S4  Bacteria  normal  0.384054  n/a   
 
 
-
 
NC_009427  Saro_3494  PAS/PAC sensor hybrid histidine kinase  55.17 
 
 
632 aa  125  5e-28  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_5387  response regulator receiver sensor signal transduction histidine kinase  40.93 
 
 
375 aa  125  5e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0971839 
 
 
-
 
NC_007492  Pfl01_2649  response regulator receiver Signal transduction histidine kinase  44.36 
 
 
404 aa  125  6e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.699737 
 
 
-
 
NC_009507  Swit_5356  response regulator receiver sensor signal transduction histidine kinase  46.27 
 
 
377 aa  125  7e-28  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.940445 
 
 
-
 
NC_010002  Daci_3828  response regulator receiver sensor signal transduction histidine kinase  49.28 
 
 
392 aa  125  9e-28  Delftia acidovorans SPH-1  Bacteria  normal  0.287383  normal  0.140943 
 
 
-
 
NC_010623  Bphy_4207  response regulator receiver sensor signal transduction histidine kinase  50.39 
 
 
370 aa  124  1e-27  Burkholderia phymatum STM815  Bacteria  normal  normal  0.728065 
 
 
-
 
NC_010501  PputW619_2109  response regulator receiver sensor signal transduction histidine kinase  46.09 
 
 
408 aa  124  1e-27  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3758  response regulator receiver sensor signal transduction histidine kinase  46.09 
 
 
408 aa  124  2e-27  Pseudomonas putida KT2440  Bacteria  normal  normal  0.734482 
 
 
-
 
NC_009512  Pput_2005  response regulator receiver sensor signal transduction histidine kinase  46.09 
 
 
408 aa  123  2e-27  Pseudomonas putida F1  Bacteria  normal  normal  0.343751 
 
 
-
 
NC_007492  Pfl01_5255  diguanylate cyclase/phosphodiesterase  48.51 
 
 
707 aa  124  2e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.864356  normal 
 
 
-
 
NC_012791  Vapar_2802  response regulator receiver sensor signal transduction histidine kinase  52.07 
 
 
406 aa  124  2e-27  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1219  response regulator receiver sensor signal transduction histidine kinase  40.41 
 
 
375 aa  124  2e-27  Burkholderia xenovorans LB400  Bacteria  normal  0.745377  normal  0.599724 
 
 
-
 
NC_010506  Swoo_1964  response regulator receiver sensor signal transduction histidine kinase  49.61 
 
 
427 aa  122  4e-27  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00543356  normal  0.092514 
 
 
-
 
NC_004578  PSPTO_2715  sensor histidine kinase/response regulator  45.6 
 
 
393 aa  122  4e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.615592  n/a   
 
 
-
 
NC_013061  Phep_4249  ATP-binding region ATPase domain protein  44.96 
 
 
374 aa  121  9e-27  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5008  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  43.67 
 
 
708 aa  120  9.999999999999999e-27  Pseudomonas putida GB-1  Bacteria  normal  0.100946  normal 
 
 
-
 
NC_007005  Psyr_2448  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  45.6 
 
 
393 aa  121  9.999999999999999e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.760608  hitchhiker  0.00120668 
 
 
-
 
NC_008781  Pnap_1070  response regulator receiver sensor signal transduction histidine kinase  45.31 
 
 
402 aa  120  9.999999999999999e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.947697  normal  0.86399 
 
 
-
 
NC_012848  Rleg_5110  histidine kinase  48.46 
 
 
558 aa  121  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.967716  normal  0.0814675 
 
 
-
 
NC_002947  PP_4959  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  43.04 
 
 
708 aa  120  1.9999999999999998e-26  Pseudomonas putida KT2440  Bacteria  normal  0.714982  normal 
 
 
-
 
NC_004578  PSPTO_5014  response regulator/sensory box/GGDEF domain/EAL domain protein  44.3 
 
 
719 aa  120  1.9999999999999998e-26  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5394  response regulator receiver sensor hybrid histidine kinase  47.48 
 
 
558 aa  120  1.9999999999999998e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0211479 
 
 
-
 
NC_008576  Mmc1_1217  multi-sensor hybrid histidine kinase  44.03 
 
 
803 aa  120  1.9999999999999998e-26  Magnetococcus sp. MC-1  Bacteria  normal  0.503931  normal  0.0882093 
 
 
-
 
NC_007005  Psyr_0509  PAS:GGDEF  44.3 
 
 
719 aa  120  3e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2639  response regulator receiver sensor signal transduction histidine kinase  49.06 
 
 
396 aa  119  3e-26  Geobacter metallireducens GS-15  Bacteria  normal  0.136447  normal  0.717158 
 
 
-
 
NC_013132  Cpin_2260  response regulator receiver sensor signal transduction histidine kinase  43.42 
 
 
361 aa  120  3e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.208609  normal 
 
 
-
 
NC_009512  Pput_4832  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  43.04 
 
 
708 aa  119  3.9999999999999996e-26  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3993  response regulator receiver sensor signal transduction histidine kinase  46.81 
 
 
390 aa  118  7e-26  Acidovorax citrulli AAC00-1  Bacteria  normal  0.967169  normal 
 
 
-
 
NC_008576  Mmc1_2114  PAS/PAC sensor hybrid histidine kinase  46.01 
 
 
674 aa  117  9.999999999999999e-26  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1132  PAS/PAC sensor hybrid histidine kinase  46.72 
 
 
647 aa  118  9.999999999999999e-26  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0372822  normal  0.204987 
 
 
-
 
NC_010501  PputW619_0507  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  51.28 
 
 
706 aa  117  1.9999999999999998e-25  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_0585  ATP-binding region ATPase domain protein  43.75 
 
 
528 aa  117  1.9999999999999998e-25  Pedobacter heparinus DSM 2366  Bacteria  normal  0.215545  normal 
 
 
-
 
NC_011992  Dtpsy_0629  response regulator receiver sensor signal transduction histidine kinase  42.2 
 
 
382 aa  115  8.999999999999998e-25  Acidovorax ebreus TPSY  Bacteria  normal  0.67365  n/a   
 
 
-
 
NC_009012  Cthe_0286  response regulator receiver sensor signal transduction histidine kinase  40.56 
 
 
424 aa  115  8.999999999999998e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.136894  n/a   
 
 
-
 
NC_010524  Lcho_1401  response regulator receiver sensor signal transduction histidine kinase  48.06 
 
 
384 aa  114  1.0000000000000001e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008782  Ajs_0650  response regulator receiver sensor signal transduction histidine kinase  46.67 
 
 
382 aa  114  1.0000000000000001e-24  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5630  histidine kinase  44.68 
 
 
714 aa  113  2.0000000000000002e-24  Burkholderia phymatum STM815  Bacteria  normal  normal  0.11737 
 
 
-
 
NC_011071  Smal_1740  response regulator receiver sensor signal transduction histidine kinase  42.22 
 
 
377 aa  113  2.0000000000000002e-24  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.129887 
 
 
-
 
NC_009485  BBta_4317  sensor histidine kinase  45.14 
 
 
499 aa  111  9e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.305311  normal 
 
 
-
 
NC_013730  Slin_1029  response regulator receiver sensor signal transduction histidine kinase  48.06 
 
 
371 aa  110  1.0000000000000001e-23  Spirosoma linguale DSM 74  Bacteria  normal  0.040723  normal 
 
 
-
 
NC_008576  Mmc1_3693  histidine kinase  44.63 
 
 
667 aa  110  1.0000000000000001e-23  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_0539  multi-sensor hybrid histidine kinase  39.7 
 
 
816 aa  109  3e-23  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.146269  normal 
 
 
-
 
NC_010511  M446_5170  PAS/PAC sensor hybrid histidine kinase  42.5 
 
 
688 aa  108  7.000000000000001e-23  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0500187 
 
 
-
 
NC_008255  CHU_2077  sensor histidine kinase/response regulator fusion protein (sensor for arcA)  39.39 
 
 
492 aa  108  8.000000000000001e-23  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0651522  normal  0.191572 
 
 
-
 
NC_011894  Mnod_6354  multi-sensor hybrid histidine kinase  42.68 
 
 
699 aa  107  2e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2474  histidine kinase  44.53 
 
 
559 aa  106  3e-22  Methylocella silvestris BL2  Bacteria  n/a    normal  0.369133 
 
 
-
 
NC_009670  Oant_4781  signal transduction histidine kinase  48.03 
 
 
356 aa  105  5e-22  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.252184  n/a   
 
 
-
 
NC_013173  Dbac_2855  response regulator receiver sensor signal transduction histidine kinase  41.52 
 
 
348 aa  103  3e-21  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0999  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  44.9 
 
 
872 aa  102  6e-21  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  39.39 
 
 
441 aa  100  2e-20  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  35.75 
 
 
441 aa  100  2e-20  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  35.9 
 
 
348 aa  99.4  4e-20  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_011138  MADE_01756  Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase)  40.29 
 
 
337 aa  99.8  4e-20  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.844049  n/a   
 
 
-
 
NC_010002  Daci_1192  response regulator receiver modulated diguanylate cyclase  41.22 
 
 
316 aa  99  6e-20  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  47.01 
 
 
312 aa  98.6  8e-20  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  47.01 
 
 
312 aa  98.6  8e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
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