Gene Cpin_0324 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0324 
Symbol 
ID8356429 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp373954 
End bp375228 
Gene Length1275 bp 
Protein Length424 aa 
Translation table11 
GC content45% 
IMG OID644962470 
Productresponse regulator receiver sensor signal transduction histidine kinase 
Protein accessionYP_003120024 
Protein GI256419371 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.046409 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCACGAAC AGGACTTAAT AAAAATATTA GTTGTTGACG ACCGGGCGGA TAATTTATTA 
TCGATTGAAT CCATCCTGGA AAGGGAGAGC TATACGATTG TAAAAGCCAA CTCGGGCAGG
GCTGCACTGA AGATCCTGTT GAAGGAATAT GATTTTTCAT TGATACTAAT GGATGTGCAG
ATGCCGGATA TGAACGGCTT TGAAACTGCA GCCCTGATCT ATCAGCGGGA TAAGCTAAAG
GAAATTCCGA TCATCTTTAT CACGGCGCAT AGTCATGAGG AAGAAGCCAT CTTTAAAGGC
TACAAGGTAG GGGCCGTAGA CTTTATTTAC AAACCGATCA ATCCTGAACT GCTAAGGGTA
AAGGTGGGAC TGTTTGTTGA ACTGTACCGA AAAACACAGT CTCTTATTGC GCAGGAACAG
AAGCTGCTGA ATACGAATGC TTCCCTGCAA CGGGAAATTG AGGAGAAAGA AGCCTCTGAG
TTAAAGGTGC GCGAACTGAA CAGGCAATTG TTGCAGAATA ACATTCACCT GAAAGCTGTC
AATGAAGAAC TGGATAGGTT TGCCTATATC GCTTCACATG ACCTCCAGGA GCCTTTGCGT
AAGATCAGGG TGTTCAGTGA TATGATCCTT CAGAAGAAGA GTAGCGCCGG CGACGTGGAT
AAATATGTGC AGAAGATCAC CAATGCGACG ATTCGTATGC AGCAACTGGT GAGCGATCTG
TTACGTTTTT CCCGGCATTC TATTCAGGGG GGCGACTTTA CAGTATGCGA CCTGAATGAC
CTGGTACGCG ATGCGCTGAC AGAACTGGAG ATCAAAGTGC AGCAATCCAG TGCCAGTATA
AAGATCGAGA AACTACCTTC TATACAGGTA ATACCTACCT TGATGCGACA GGTATTTTAC
AACCTGATCA GCAATGCGCT GAAGTTCCGC AAGAAGGAAG TGTCACCGGA GGTGCGTATC
TATGCAGAAC TGGTGGCATC GCCTGATCCG CATCTGCGTG AAAGACCGGA TGGTAATTAT
TATAAGATCT TTGTTGTTGA CAATGGTATT GGCTTTGAGA GTCAGTATGT CGAAGATATA
TTCGTTGTGT TTAAACGCTT GCATAGCTAT CATGAGATCG AAGGGACGGG TATCGGTCTT
TCGATCTGTA AAAAGATCAT GGAGCAGCAC AATGGTTTTA TTACAGCGAC GAGTGAGATT
GATAATGGAG CGACGTTTAT TATCGGAATA CCGGAGAAGC AGATGTTGCC GGTGAATATG
ACGTTGATGG ATTAA
 
Protein sequence
MHEQDLIKIL VVDDRADNLL SIESILERES YTIVKANSGR AALKILLKEY DFSLILMDVQ 
MPDMNGFETA ALIYQRDKLK EIPIIFITAH SHEEEAIFKG YKVGAVDFIY KPINPELLRV
KVGLFVELYR KTQSLIAQEQ KLLNTNASLQ REIEEKEASE LKVRELNRQL LQNNIHLKAV
NEELDRFAYI ASHDLQEPLR KIRVFSDMIL QKKSSAGDVD KYVQKITNAT IRMQQLVSDL
LRFSRHSIQG GDFTVCDLND LVRDALTELE IKVQQSSASI KIEKLPSIQV IPTLMRQVFY
NLISNALKFR KKEVSPEVRI YAELVASPDP HLRERPDGNY YKIFVVDNGI GFESQYVEDI
FVVFKRLHSY HEIEGTGIGL SICKKIMEQH NGFITATSEI DNGATFIIGI PEKQMLPVNM
TLMD