Gene PputGB1_5008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_5008 
Symbol 
ID5872823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5593222 
End bp5595348 
Gene Length2127 bp 
Protein Length708 aa 
Translation table11 
GC content63% 
IMG OID641550146 
Productresponse regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001671228 
Protein GI167035997 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.100946 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGGCG CTCACCCTCA ACCACAGCCA CTGGATGGCA GCTCGGTTCT TCTGGTAGTA 
GACGACTACC CCGAGAACCT GATCAGCATG CGGGCCTTGC TGGCCCGGCA GGATTGGCAA
GTGTTGACGG CAAGCTCGGG GATGGAAGCC TTGAGTGCGT TGCTTGAACA CGAAGTCGAC
CTGGTGCTGC TGGATGTACA GATGCCGGAA ATGGACGGTT TTGAGGTTGC CCGGCTGATG
CGCGGCAGCC AACGCACCCG GCTGACCCCG ATCATTTTCC TCACCGCCAA CGAACAGTCC
GAAGCGGCCG TGCTCAAAGG CTACGCCAGC GGCGCCGTGG ACTACATGTT CAAACCGTTC
GACCCGCAGA TTCTCAAACC CAAGGTTCAG GCGCTGCTCG ACCAGCAGCG CAACCGTCGC
ATGCTGCAGC GGCTGAGCCG TGAGCTGGAA GCGGCCAGGG CCTTCAACGC GTCGATCCTG
GAAAATGCCG CCGAAGGCAT CCTGGTGGTA GATGCCGAAG GCACCATCAG TTTTGCCAAC
CCGGCCATCT CGCGCTTGCT GTCGTCCCCG GTGCAGCAGC TGCAGGGCGC CCACCTGCTC
GACCTGATGC AACTGGCCAG TGCCAGCCTG TGGCGCGAAT CGGACTTCTA CCAGGCCTAT
CTGGGGCGCC AGATTTTCCG TGTACACGAT GCCCAACTAC GCACACAGGG GGGCGAACTG
GTGCCGGTGG CGCTGTCCTG CGCACCGTTG CCCGTCGACC AGCAGGCCAT GGTGGTGACC
GTGCTGGACA TGTCGGTGGT GCGCAACCTG CACCAGCAAC TGGAGTACCA AGCCATTACC
GACCCGCTCA CCGGACTGCT CAACCGTCGC GGTTTCTATC AGGCCGCCGA AGGTGCGCTG
TTGCGCAACG AGCGCTCGGA CAAGGCGCAG GCGCTGATGT ACATGGACCT GGACGGCTTC
AAGCGTATCA ACGACTCGCT TGGCCATGAT GCGGGCGACC GGGTGTTGCG CTGGGTGGCC
GAGCAGCTCA AGGACTGCCT GGGCAGTGAG GCTTTGCTGG CGCGCATGGG CGGGGATGAG
TTCACCGCAC TGTTCGACAG CTTGCCTTAC CCGGAGCAGG CCGGGCGTTA TGCCGAACGG
CTGCTCGAGC GTGTTTCCAT CAGCCATGAG GTAGACGGGC TCGACGTATG CCTTGGGGTG
AGCATCGGCA TCGCCACCTA CCCGGACTGC GGCGCCAATG TAGAAGGCCT GCTACGCGCA
GCCGATGCCG CGATGTACGC GGCCAAGCGG GCCGGCCGCC AGCAATATCG CTTCTACGAT
CAGGAACTCA ATGGCAGGGC GCGCTCGCGG TTGATGCTTG AGGACGGTGT GCGCACGGCC
ATCGAGCAGC AAGACTTCAC CTTGGTGTAC CAGCCGCAGG TCTCCTTCAA CGATGGCCGT
CTGCGAGGGT TCGAAGCCTT GCTGCGCTGG CAGCACCCCA GTGTTGGCGA TGTGCCGCCG
GGGCTGTTCA TCCCGTTGCT GGAGGAGGCG CGGTTGATCA ACCGCCTGGC CAGCTGGATC
TACCGCCAGG GCGCGGCCCA GCGGCAGGCC TGGTACGAAC GCTTTCCGGC AGACCTTGTG
CTTGGCATCA GCCTGAGCCG CGCGCAGTTC GTGATGCCAG GCCTGGTCGA AGAGCTGCAG
CGGGTCATCC AGCTTTACCA GCTTGTCCCG GCGCAGCTGG AGGTGGAGGT GGCGGAAACC
TCGCTGATGT ACAACATCGA TGCGGCCGTC AAACAGATAC ACCGCTTGCG CGAGCTTGGC
GTGCGGGTGG CCCTGGATGA CTTTGGTGCG GGCGACTGTT CGCTGCGCAT GCTGCGTGAC
TTGCCGATCG ACACCTTGAA ACTCGACCGT CACCTGGTAG CGCGCTTGCC CGACTCGGCA
GTGGATGCCG CCCTGGTGCG CAGCGTTATC GGGCTGTGTG CCGACTACAG CATCACGGTG
ATCGCCGAGG GTGTGGAAAC CCCGGCACAG GTGGCCTGGC TCAAAGCCAA TGGTTGTGAA
TACGTTCAGG GTTTCCTGGT GGCTTATCCG ATGACTGCCG CGGACGCCAG CGGCTTCCCG
GCGATTTTCT CCTGGCCAGG GCCATGA
 
Protein sequence
MDGAHPQPQP LDGSSVLLVV DDYPENLISM RALLARQDWQ VLTASSGMEA LSALLEHEVD 
LVLLDVQMPE MDGFEVARLM RGSQRTRLTP IIFLTANEQS EAAVLKGYAS GAVDYMFKPF
DPQILKPKVQ ALLDQQRNRR MLQRLSRELE AARAFNASIL ENAAEGILVV DAEGTISFAN
PAISRLLSSP VQQLQGAHLL DLMQLASASL WRESDFYQAY LGRQIFRVHD AQLRTQGGEL
VPVALSCAPL PVDQQAMVVT VLDMSVVRNL HQQLEYQAIT DPLTGLLNRR GFYQAAEGAL
LRNERSDKAQ ALMYMDLDGF KRINDSLGHD AGDRVLRWVA EQLKDCLGSE ALLARMGGDE
FTALFDSLPY PEQAGRYAER LLERVSISHE VDGLDVCLGV SIGIATYPDC GANVEGLLRA
ADAAMYAAKR AGRQQYRFYD QELNGRARSR LMLEDGVRTA IEQQDFTLVY QPQVSFNDGR
LRGFEALLRW QHPSVGDVPP GLFIPLLEEA RLINRLASWI YRQGAAQRQA WYERFPADLV
LGISLSRAQF VMPGLVEELQ RVIQLYQLVP AQLEVEVAET SLMYNIDAAV KQIHRLRELG
VRVALDDFGA GDCSLRMLRD LPIDTLKLDR HLVARLPDSA VDAALVRSVI GLCADYSITV
IAEGVETPAQ VAWLKANGCE YVQGFLVAYP MTAADASGFP AIFSWPGP