More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_2145 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_3758  response regulator receiver sensor signal transduction histidine kinase  91.4 
 
 
408 aa  753    Pseudomonas putida KT2440  Bacteria  normal  normal  0.734482 
 
 
-
 
NC_010322  PputGB1_2145  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
408 aa  824    Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.001377 
 
 
-
 
NC_009512  Pput_2005  response regulator receiver sensor signal transduction histidine kinase  90.91 
 
 
408 aa  751    Pseudomonas putida F1  Bacteria  normal  normal  0.343751 
 
 
-
 
NC_010501  PputW619_2109  response regulator receiver sensor signal transduction histidine kinase  89.71 
 
 
408 aa  740    Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2649  response regulator receiver Signal transduction histidine kinase  72.24 
 
 
404 aa  587  1e-166  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.699737 
 
 
-
 
NC_007005  Psyr_2448  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  72.77 
 
 
393 aa  578  1e-164  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.760608  hitchhiker  0.00120668 
 
 
-
 
NC_004578  PSPTO_2715  sensor histidine kinase/response regulator  72.26 
 
 
393 aa  574  1.0000000000000001e-163  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.615592  n/a   
 
 
-
 
NC_009439  Pmen_0172  response regulator receiver sensor signal transduction histidine kinase  63.52 
 
 
395 aa  491  1e-137  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_2802  response regulator receiver sensor signal transduction histidine kinase  61 
 
 
406 aa  484  1e-135  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1070  response regulator receiver sensor signal transduction histidine kinase  62.78 
 
 
402 aa  471  1e-132  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.947697  normal  0.86399 
 
 
-
 
NC_007947  Mfla_2590  response regulator receiver sensor signal transduction histidine kinase  58.91 
 
 
405 aa  469  1.0000000000000001e-131  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.413696 
 
 
-
 
NC_011992  Dtpsy_0629  response regulator receiver sensor signal transduction histidine kinase  42.86 
 
 
382 aa  260  3e-68  Acidovorax ebreus TPSY  Bacteria  normal  0.67365  n/a   
 
 
-
 
NC_013216  Dtox_3783  histidine kinase  38.11 
 
 
544 aa  259  8e-68  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.401083  normal 
 
 
-
 
NC_008752  Aave_3993  response regulator receiver sensor signal transduction histidine kinase  40.31 
 
 
390 aa  258  2e-67  Acidovorax citrulli AAC00-1  Bacteria  normal  0.967169  normal 
 
 
-
 
NC_008782  Ajs_0650  response regulator receiver sensor signal transduction histidine kinase  42.03 
 
 
382 aa  257  2e-67  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011984  Avi_9098  bacteriophytochrome protein  39 
 
 
378 aa  247  2e-64  Agrobacterium vitis S4  Bacteria  normal  0.384054  n/a   
 
 
-
 
NC_011071  Smal_1740  response regulator receiver sensor signal transduction histidine kinase  39.07 
 
 
377 aa  246  6.999999999999999e-64  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.129887 
 
 
-
 
NC_010002  Daci_3828  response regulator receiver sensor signal transduction histidine kinase  40.31 
 
 
392 aa  244  1.9999999999999999e-63  Delftia acidovorans SPH-1  Bacteria  normal  0.287383  normal  0.140943 
 
 
-
 
NC_013061  Phep_4249  ATP-binding region ATPase domain protein  37.11 
 
 
374 aa  235  1.0000000000000001e-60  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009507  Swit_5356  response regulator receiver sensor signal transduction histidine kinase  36.95 
 
 
377 aa  234  3e-60  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.940445 
 
 
-
 
NC_010623  Bphy_4207  response regulator receiver sensor signal transduction histidine kinase  36.29 
 
 
370 aa  233  4.0000000000000004e-60  Burkholderia phymatum STM815  Bacteria  normal  normal  0.728065 
 
 
-
 
NC_010676  Bphyt_5387  response regulator receiver sensor signal transduction histidine kinase  37.59 
 
 
375 aa  227  2e-58  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0971839 
 
 
-
 
NC_007952  Bxe_B1219  response regulator receiver sensor signal transduction histidine kinase  37.25 
 
 
375 aa  226  4e-58  Burkholderia xenovorans LB400  Bacteria  normal  0.745377  normal  0.599724 
 
 
-
 
NC_013061  Phep_0585  ATP-binding region ATPase domain protein  35.29 
 
 
528 aa  223  7e-57  Pedobacter heparinus DSM 2366  Bacteria  normal  0.215545  normal 
 
 
-
 
NC_011884  Cyan7425_3767  response regulator receiver sensor hybrid histidine kinase  36.56 
 
 
587 aa  220  3e-56  Cyanothece sp. PCC 7425  Bacteria  normal  0.634012  normal 
 
 
-
 
NC_013440  Hoch_6238  histidine kinase  33.25 
 
 
519 aa  207  2e-52  Haliangium ochraceum DSM 14365  Bacteria  normal  0.547868  normal 
 
 
-
 
NC_007517  Gmet_2639  response regulator receiver sensor signal transduction histidine kinase  35.7 
 
 
396 aa  204  3e-51  Geobacter metallireducens GS-15  Bacteria  normal  0.136447  normal  0.717158 
 
 
-
 
NC_013440  Hoch_2075  response regulator receiver sensor hybrid histidine kinase  34.83 
 
 
572 aa  202  9e-51  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3693  histidine kinase  31.95 
 
 
667 aa  197  4.0000000000000005e-49  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_3864  multi-sensor signal transduction histidine kinase  44.81 
 
 
592 aa  193  5e-48  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.130733  n/a   
 
 
-
 
NC_011145  AnaeK_3781  multi-sensor signal transduction histidine kinase  44.81 
 
 
592 aa  193  5e-48  Anaeromyxobacter sp. K  Bacteria  normal  0.233259  n/a   
 
 
-
 
NC_011891  A2cp1_1867  GAF sensor signal transduction histidine kinase  41.39 
 
 
763 aa  192  1e-47  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1788  GAF sensor signal transduction histidine kinase  40.89 
 
 
763 aa  192  1e-47  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2090  GAF sensor signal transduction histidine kinase  40.49 
 
 
763 aa  190  4e-47  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.163656  n/a   
 
 
-
 
NC_009675  Anae109_2560  PAS/PAC sensor signal transduction histidine kinase  43.46 
 
 
518 aa  189  8e-47  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.315276 
 
 
-
 
NC_007760  Adeh_3724  multi-sensor signal transduction histidine kinase  43.98 
 
 
592 aa  187  2e-46  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1722  GAF sensor signal transduction histidine kinase  41.03 
 
 
763 aa  187  4e-46  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.418059 
 
 
-
 
NC_009012  Cthe_0286  response regulator receiver sensor signal transduction histidine kinase  30.98 
 
 
424 aa  184  3e-45  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.136894  n/a   
 
 
-
 
NC_009441  Fjoh_3355  response regulator receiver sensor signal transduction histidine kinase  29.36 
 
 
405 aa  184  3e-45  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3271  PAS/PAC sensor hybrid histidine kinase  31.86 
 
 
1691 aa  182  7e-45  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2142  histidine kinase  42.49 
 
 
502 aa  180  2.9999999999999997e-44  Anaeromyxobacter sp. Fw109-5  Bacteria  decreased coverage  0.000590991  normal  0.0793761 
 
 
-
 
NC_013132  Cpin_0324  response regulator receiver sensor signal transduction histidine kinase  31.85 
 
 
424 aa  181  2.9999999999999997e-44  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.046409  normal 
 
 
-
 
NC_009675  Anae109_0792  GAF sensor signal transduction histidine kinase  44.05 
 
 
592 aa  177  2e-43  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.389456  hitchhiker  0.00398352 
 
 
-
 
NC_009675  Anae109_1498  GAF sensor signal transduction histidine kinase  40.24 
 
 
1070 aa  178  2e-43  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.308131  normal  0.537019 
 
 
-
 
NC_007760  Adeh_1623  PAS/PAC sensor signal transduction histidine kinase  44.35 
 
 
377 aa  175  9.999999999999999e-43  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.632325  n/a   
 
 
-
 
NC_009675  Anae109_2235  multi-sensor signal transduction histidine kinase  40.43 
 
 
716 aa  172  6.999999999999999e-42  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.530022  normal  0.014643 
 
 
-
 
NC_011145  AnaeK_2237  PAS/PAC sensor signal transduction histidine kinase  45.02 
 
 
381 aa  172  1e-41  Anaeromyxobacter sp. K  Bacteria  normal  0.5102  n/a   
 
 
-
 
NC_011891  A2cp1_2325  PAS/PAC sensor signal transduction histidine kinase  45.02 
 
 
381 aa  172  1e-41  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.830525  n/a   
 
 
-
 
NC_013132  Cpin_2260  response regulator receiver sensor signal transduction histidine kinase  31.98 
 
 
361 aa  170  3e-41  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.208609  normal 
 
 
-
 
NC_009675  Anae109_3853  multi-sensor signal transduction histidine kinase  36.17 
 
 
591 aa  170  5e-41  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2188  PAS/PAC sensor signal transduction histidine kinase  43.17 
 
 
413 aa  166  5.9999999999999996e-40  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.925316 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  31.22 
 
 
378 aa  166  8e-40  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_007760  Adeh_0506  PAS/PAC sensor signal transduction histidine kinase  38.72 
 
 
383 aa  166  8e-40  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0395  multi-sensor signal transduction histidine kinase  35.53 
 
 
509 aa  165  1.0000000000000001e-39  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2823  histidine kinase  40.33 
 
 
501 aa  164  3e-39  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0535  PAS/PAC sensor signal transduction histidine kinase  37.02 
 
 
383 aa  163  6e-39  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.175177  n/a   
 
 
-
 
NC_011145  AnaeK_0539  PAS/PAC sensor signal transduction histidine kinase  37.02 
 
 
383 aa  163  6e-39  Anaeromyxobacter sp. K  Bacteria  normal  0.143908  n/a   
 
 
-
 
NC_011891  A2cp1_0806  GAF sensor signal transduction histidine kinase  39.91 
 
 
587 aa  161  2e-38  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0802  GAF sensor signal transduction histidine kinase  39.91 
 
 
587 aa  161  2e-38  Anaeromyxobacter sp. K  Bacteria  normal  0.773486  n/a   
 
 
-
 
NC_007348  Reut_B4539  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  32.16 
 
 
1152 aa  160  3e-38  Ralstonia eutropha JMP134  Bacteria  normal  0.329946  n/a   
 
 
-
 
NC_011891  A2cp1_2991  GAF sensor signal transduction histidine kinase  42.24 
 
 
1069 aa  160  3e-38  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4211  PAS/PAC sensor signal transduction histidine kinase  38.37 
 
 
403 aa  159  6e-38  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.108613  normal 
 
 
-
 
NC_011145  AnaeK_2900  multi-sensor signal transduction histidine kinase  41.81 
 
 
1069 aa  159  9e-38  Anaeromyxobacter sp. K  Bacteria  normal  0.095908  n/a   
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  28.75 
 
 
383 aa  159  1e-37  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  28.95 
 
 
383 aa  157  4e-37  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2805  multi-sensor signal transduction histidine kinase  41.81 
 
 
1070 aa  156  6e-37  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0755  GAF sensor signal transduction histidine kinase  40.34 
 
 
588 aa  156  8e-37  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.452305  n/a   
 
 
-
 
NC_007413  Ava_1561  response regulator receiver Signal transduction histidine kinase  31.45 
 
 
443 aa  155  9e-37  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.414952 
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  29.78 
 
 
383 aa  154  4e-36  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010524  Lcho_1401  response regulator receiver sensor signal transduction histidine kinase  30.71 
 
 
384 aa  153  5.9999999999999996e-36  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013440  Hoch_3251  response regulator receiver sensor signal transduction histidine kinase  31.76 
 
 
418 aa  153  5.9999999999999996e-36  Haliangium ochraceum DSM 14365  Bacteria  normal  0.35487  normal  0.0265543 
 
 
-
 
NC_013173  Dbac_0019  response regulator receiver modulated diguanylate cyclase  41.28 
 
 
341 aa  152  1e-35  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0416556  n/a   
 
 
-
 
NC_009972  Haur_3365  multi-sensor signal transduction histidine kinase  38.03 
 
 
733 aa  152  1e-35  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_0931  response regulator receiver sensor signal transduction histidine kinase  31.13 
 
 
446 aa  151  2e-35  'Nostoc azollae' 0708  Bacteria  normal  0.523505  n/a   
 
 
-
 
NC_008254  Meso_1944  signal transduction histidine kinase  50 
 
 
507 aa  151  2e-35  Chelativorans sp. BNC1  Bacteria  normal  0.0183597  n/a   
 
 
-
 
NC_010644  Emin_1198  response regulator receiver sensor signal transduction histidine kinase  30.33 
 
 
375 aa  151  2e-35  Elusimicrobium minutum Pei191  Bacteria  normal  hitchhiker  0.00328285 
 
 
-
 
NC_013440  Hoch_5143  response regulator receiver sensor signal transduction histidine kinase  29.43 
 
 
408 aa  150  4e-35  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19932  normal 
 
 
-
 
NC_011891  A2cp1_4275  multi-sensor signal transduction histidine kinase  38.27 
 
 
712 aa  150  4e-35  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1964  response regulator receiver sensor signal transduction histidine kinase  25.97 
 
 
427 aa  149  7e-35  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00543356  normal  0.092514 
 
 
-
 
NC_011145  AnaeK_4252  multi-sensor signal transduction histidine kinase  38.71 
 
 
712 aa  149  8e-35  Anaeromyxobacter sp. K  Bacteria  normal  0.374039  n/a   
 
 
-
 
NC_012918  GM21_0057  histidine kinase  30.34 
 
 
588 aa  148  1.0000000000000001e-34  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000000185994 
 
 
-
 
NC_011729  PCC7424_1421  response regulator receiver sensor signal transduction histidine kinase  31.01 
 
 
404 aa  149  1.0000000000000001e-34  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_0367  multi-sensor signal transduction histidine kinase  33.97 
 
 
507 aa  148  2.0000000000000003e-34  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0099  signal transduction histidine kinase-like protein  39.38 
 
 
938 aa  147  3e-34  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.878773 
 
 
-
 
NC_011884  Cyan7425_4608  multi-sensor signal transduction histidine kinase  31.02 
 
 
1645 aa  147  4.0000000000000006e-34  Cyanothece sp. PCC 7425  Bacteria  normal  0.284957  normal  0.407853 
 
 
-
 
NC_011729  PCC7424_0500  response regulator receiver sensor signal transduction histidine kinase  29.4 
 
 
373 aa  147  4.0000000000000006e-34  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013526  Tter_2563  multi-sensor signal transduction histidine kinase  36.25 
 
 
543 aa  147  5e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1941  response regulator receiver sensor signal transduction histidine kinase  30.71 
 
 
395 aa  145  1e-33  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0596409  n/a   
 
 
-
 
NC_013440  Hoch_5118  integral membrane sensor hybrid histidine kinase  30.6 
 
 
837 aa  145  1e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.657918 
 
 
-
 
NC_007760  Adeh_4121  multi-sensor signal transduction histidine kinase  37.86 
 
 
712 aa  144  2e-33  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.6651  n/a   
 
 
-
 
NC_011884  Cyan7425_4555  response regulator receiver sensor signal transduction histidine kinase  29.66 
 
 
406 aa  144  2e-33  Cyanothece sp. PCC 7425  Bacteria  normal  0.330139  normal  0.677797 
 
 
-
 
NC_011884  Cyan7425_2570  response regulator receiver sensor signal transduction histidine kinase  28.92 
 
 
381 aa  144  3e-33  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009507  Swit_5353  multi-sensor hybrid histidine kinase  36.73 
 
 
1143 aa  144  4e-33  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.385348 
 
 
-
 
NC_013093  Amir_2209  GAF sensor signal transduction histidine kinase  37.64 
 
 
399 aa  143  6e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0404  Signal transduction histidine kinase-like  36.71 
 
 
498 aa  142  8e-33  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5255  diguanylate cyclase/phosphodiesterase  52.55 
 
 
707 aa  142  9e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.864356  normal 
 
 
-
 
NC_008576  Mmc1_2393  response regulator receiver sensor hybrid histidine kinase  30.1 
 
 
518 aa  142  9.999999999999999e-33  Magnetococcus sp. MC-1  Bacteria  normal  0.991201  normal  0.0787545 
 
 
-
 
NC_007413  Ava_1562  response regulator receiver Signal transduction histidine kinase  26.57 
 
 
369 aa  142  1.9999999999999998e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  0.847548  normal  0.236297 
 
 
-
 
NC_007413  Ava_3819  PAS/PAC sensor hybrid histidine kinase  36.36 
 
 
1297 aa  141  1.9999999999999998e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  0.11644  normal 
 
 
-
 
NC_013730  Slin_1029  response regulator receiver sensor signal transduction histidine kinase  29.49 
 
 
371 aa  141  1.9999999999999998e-32  Spirosoma linguale DSM 74  Bacteria  normal  0.040723  normal 
 
 
-
 
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