Gene Ava_1561 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1561 
Symbol 
ID3681104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1921346 
End bp1922677 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content38% 
IMG OID637716901 
Productresponse regulator receiver Signal transduction histidine kinase 
Protein accessionYP_322079 
Protein GI75907783 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.414952 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGAGA CGCTAAAGAT TTTGGTTGTA GACGATGATG AAGTAGACCG CATGACAGTT 
CGCCGTGCTT TGGTTAAAGC TGGGGTACGT ATGGAAATGT CAGAGGTAAG TGACGGAAAC
ACGGCGCTCT CTATCTTAAG AAATACATCT TTTGATTGTG CCTTCATCGA CTATCGTTTA
CCCGACCAAG ACGGTTTAAA CTTAATCGAA ACAATTCGTA GCTTAAATAT CAAAATTCCT
TTAGTAGTTT TGACTTCTCA AGGTGATGAA CAAATTGCCG TGGAGTTAAT GAAAGCTGGT
GCAACAGATT ACTTATCTAA ATTTAGAGTT TCATCGGAAA CTTTAGCTCA AGTTTTACGT
AATGCAATGC GGCTTTATCG TGCAGAAATG CAGACTGCTA TTGCCTACCA ACAACTGAGA
GAAAGTCATG AGCAACTGGT GCGAAAAAAT CAAGAATTAG AACGACAACG GCAACAAATC
CAAATTCAAA ACTTAAAACT ATTAGAAGCA TCGCGGCTGA AATCTCAATT TCTCGCTACC
ATGTCCCATG AATTGAGAAC ACCAATGAAC GCGATTATTG GTTTTTCTCA GATATTGTTA
CGCCCTAAAT TCGGCAATCT CACAGGTCAG CAAGCCGATA TGGTAGAACG GATTCTGAAT
AATGGCAAAC ATTTATTGAT GCTATTAAAT GAAGTTTTAG ACTTCTCCAA ATTAGAAGAG
GGAAGATTAG AACTGAAGCC AGAATTATTT GATTTAACTA AAGTAATTAA CGCTGCCGTT
GCGGAAATGC GCTCTCTAGC TGAGGCAAAA AAGCTGTCTT TGCTAGTGCA GATTGACTTA
CAAAATCCTT TGCTAGTAAA TGATCCAGTA AGAATTAAAC AAATTCTAAT AAATTTATTA
TCTAATGCCA TTAAGTTCAC AGACTCTGGT AGTATTTGGA TCGATGTAAA AGACTTACCA
GGAAGTTGGG TGGAAATTAG AGTAAAAGAT ACAGGTATTG GCATAGCATC TAAAGATTTT
AAATATATTT TTGAGGCTTT TCGACAAGTT GATCAAAGCA TTACTCGCAA GTATGCAGGT
ACAGGTTTGG GGTTGGCAAT TATCGACTCG TTAGTGCAAA TGATGAGTGG TAAAATTATC
TTAGAAAGTC AATTGGGAGT AGGTTCAATT TTTACAATTA CATTGCCAAG ACAATTGCCA
TTGTCAAACT TATCTCTATC TTCATCATCT GTGCAAGATG CGAAAGAAAT GATGCAGCCA
GATCACAAAG TACACCACCC TACGGCTAAA TCCAACCCAG CCCCCAGGAA ATATCATAAT
CTCAAGTTAT AA
 
Protein sequence
MEETLKILVV DDDEVDRMTV RRALVKAGVR MEMSEVSDGN TALSILRNTS FDCAFIDYRL 
PDQDGLNLIE TIRSLNIKIP LVVLTSQGDE QIAVELMKAG ATDYLSKFRV SSETLAQVLR
NAMRLYRAEM QTAIAYQQLR ESHEQLVRKN QELERQRQQI QIQNLKLLEA SRLKSQFLAT
MSHELRTPMN AIIGFSQILL RPKFGNLTGQ QADMVERILN NGKHLLMLLN EVLDFSKLEE
GRLELKPELF DLTKVINAAV AEMRSLAEAK KLSLLVQIDL QNPLLVNDPV RIKQILINLL
SNAIKFTDSG SIWIDVKDLP GSWVEIRVKD TGIGIASKDF KYIFEAFRQV DQSITRKYAG
TGLGLAIIDS LVQMMSGKII LESQLGVGSI FTITLPRQLP LSNLSLSSSS VQDAKEMMQP
DHKVHHPTAK SNPAPRKYHN LKL