More than 300 homologs were found in PanDaTox collection
for query gene Pmen_0172 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_0172  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
395 aa  789    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2649  response regulator receiver Signal transduction histidine kinase  64.54 
 
 
404 aa  516  1.0000000000000001e-145  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.699737 
 
 
-
 
NC_004578  PSPTO_2715  sensor histidine kinase/response regulator  64.03 
 
 
393 aa  499  1e-140  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.615592  n/a   
 
 
-
 
NC_002947  PP_3758  response regulator receiver sensor signal transduction histidine kinase  63.52 
 
 
408 aa  495  1e-139  Pseudomonas putida KT2440  Bacteria  normal  normal  0.734482 
 
 
-
 
NC_007005  Psyr_2448  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  63.52 
 
 
393 aa  495  1e-139  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.760608  hitchhiker  0.00120668 
 
 
-
 
NC_010501  PputW619_2109  response regulator receiver sensor signal transduction histidine kinase  63.78 
 
 
408 aa  496  1e-139  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2005  response regulator receiver sensor signal transduction histidine kinase  63.52 
 
 
408 aa  494  9.999999999999999e-139  Pseudomonas putida F1  Bacteria  normal  normal  0.343751 
 
 
-
 
NC_010322  PputGB1_2145  response regulator receiver sensor signal transduction histidine kinase  63.52 
 
 
408 aa  491  1e-137  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.001377 
 
 
-
 
NC_012791  Vapar_2802  response regulator receiver sensor signal transduction histidine kinase  60.15 
 
 
406 aa  462  1e-129  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1070  response regulator receiver sensor signal transduction histidine kinase  57.77 
 
 
402 aa  423  1e-117  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.947697  normal  0.86399 
 
 
-
 
NC_007947  Mfla_2590  response regulator receiver sensor signal transduction histidine kinase  51.41 
 
 
405 aa  402  1e-111  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.413696 
 
 
-
 
NC_011992  Dtpsy_0629  response regulator receiver sensor signal transduction histidine kinase  40.15 
 
 
382 aa  251  1e-65  Acidovorax ebreus TPSY  Bacteria  normal  0.67365  n/a   
 
 
-
 
NC_008782  Ajs_0650  response regulator receiver sensor signal transduction histidine kinase  40.05 
 
 
382 aa  249  5e-65  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_3783  histidine kinase  36.34 
 
 
544 aa  241  2e-62  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.401083  normal 
 
 
-
 
NC_011984  Avi_9098  bacteriophytochrome protein  39.34 
 
 
378 aa  240  2.9999999999999997e-62  Agrobacterium vitis S4  Bacteria  normal  0.384054  n/a   
 
 
-
 
NC_008752  Aave_3993  response regulator receiver sensor signal transduction histidine kinase  40.36 
 
 
390 aa  239  8e-62  Acidovorax citrulli AAC00-1  Bacteria  normal  0.967169  normal 
 
 
-
 
NC_009507  Swit_5356  response regulator receiver sensor signal transduction histidine kinase  38.13 
 
 
377 aa  235  9e-61  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.940445 
 
 
-
 
NC_010002  Daci_3828  response regulator receiver sensor signal transduction histidine kinase  39.75 
 
 
392 aa  235  1.0000000000000001e-60  Delftia acidovorans SPH-1  Bacteria  normal  0.287383  normal  0.140943 
 
 
-
 
NC_013061  Phep_4249  ATP-binding region ATPase domain protein  38.3 
 
 
374 aa  234  2.0000000000000002e-60  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1740  response regulator receiver sensor signal transduction histidine kinase  38.29 
 
 
377 aa  229  5e-59  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.129887 
 
 
-
 
NC_011884  Cyan7425_3767  response regulator receiver sensor hybrid histidine kinase  36.43 
 
 
587 aa  220  3e-56  Cyanothece sp. PCC 7425  Bacteria  normal  0.634012  normal 
 
 
-
 
NC_013061  Phep_0585  ATP-binding region ATPase domain protein  34.7 
 
 
528 aa  219  5e-56  Pedobacter heparinus DSM 2366  Bacteria  normal  0.215545  normal 
 
 
-
 
NC_010676  Bphyt_5387  response regulator receiver sensor signal transduction histidine kinase  35.95 
 
 
375 aa  216  7e-55  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0971839 
 
 
-
 
NC_010623  Bphy_4207  response regulator receiver sensor signal transduction histidine kinase  37.08 
 
 
370 aa  215  9.999999999999999e-55  Burkholderia phymatum STM815  Bacteria  normal  normal  0.728065 
 
 
-
 
NC_007952  Bxe_B1219  response regulator receiver sensor signal transduction histidine kinase  35.37 
 
 
375 aa  211  1e-53  Burkholderia xenovorans LB400  Bacteria  normal  0.745377  normal  0.599724 
 
 
-
 
NC_013440  Hoch_6238  histidine kinase  36.43 
 
 
519 aa  210  4e-53  Haliangium ochraceum DSM 14365  Bacteria  normal  0.547868  normal 
 
 
-
 
NC_013440  Hoch_2075  response regulator receiver sensor hybrid histidine kinase  34.71 
 
 
572 aa  194  3e-48  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3693  histidine kinase  31.76 
 
 
667 aa  190  2.9999999999999997e-47  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2639  response regulator receiver sensor signal transduction histidine kinase  34.88 
 
 
396 aa  185  1.0000000000000001e-45  Geobacter metallireducens GS-15  Bacteria  normal  0.136447  normal  0.717158 
 
 
-
 
NC_009012  Cthe_0286  response regulator receiver sensor signal transduction histidine kinase  28.79 
 
 
424 aa  175  9.999999999999999e-43  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.136894  n/a   
 
 
-
 
NC_009441  Fjoh_3355  response regulator receiver sensor signal transduction histidine kinase  29.4 
 
 
405 aa  175  1.9999999999999998e-42  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0324  response regulator receiver sensor signal transduction histidine kinase  30.59 
 
 
424 aa  173  5.999999999999999e-42  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.046409  normal 
 
 
-
 
NC_011145  AnaeK_1788  GAF sensor signal transduction histidine kinase  41.79 
 
 
763 aa  171  2e-41  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1867  GAF sensor signal transduction histidine kinase  41.79 
 
 
763 aa  171  2e-41  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2560  PAS/PAC sensor signal transduction histidine kinase  39.83 
 
 
518 aa  167  2.9999999999999998e-40  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.315276 
 
 
-
 
NC_011145  AnaeK_3781  multi-sensor signal transduction histidine kinase  36.28 
 
 
592 aa  167  2.9999999999999998e-40  Anaeromyxobacter sp. K  Bacteria  normal  0.233259  n/a   
 
 
-
 
NC_007760  Adeh_2090  GAF sensor signal transduction histidine kinase  43.23 
 
 
763 aa  167  4e-40  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.163656  n/a   
 
 
-
 
NC_011891  A2cp1_3864  multi-sensor signal transduction histidine kinase  36.28 
 
 
592 aa  167  4e-40  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.130733  n/a   
 
 
-
 
NC_009675  Anae109_3853  multi-sensor signal transduction histidine kinase  37.01 
 
 
591 aa  166  5.9999999999999996e-40  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_3724  multi-sensor signal transduction histidine kinase  36.28 
 
 
592 aa  165  1.0000000000000001e-39  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3271  PAS/PAC sensor hybrid histidine kinase  33.08 
 
 
1691 aa  164  2.0000000000000002e-39  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1722  GAF sensor signal transduction histidine kinase  42.37 
 
 
763 aa  163  4.0000000000000004e-39  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.418059 
 
 
-
 
NC_009675  Anae109_0792  GAF sensor signal transduction histidine kinase  44.84 
 
 
592 aa  162  7e-39  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.389456  hitchhiker  0.00398352 
 
 
-
 
NC_009675  Anae109_2823  histidine kinase  38.11 
 
 
501 aa  160  2e-38  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  30 
 
 
383 aa  161  2e-38  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_009675  Anae109_2142  histidine kinase  41.88 
 
 
502 aa  161  2e-38  Anaeromyxobacter sp. Fw109-5  Bacteria  decreased coverage  0.000590991  normal  0.0793761 
 
 
-
 
NC_013173  Dbac_0019  response regulator receiver modulated diguanylate cyclase  44.55 
 
 
341 aa  159  1e-37  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0416556  n/a   
 
 
-
 
NC_009675  Anae109_2188  PAS/PAC sensor signal transduction histidine kinase  42.44 
 
 
413 aa  157  4e-37  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.925316 
 
 
-
 
NC_009675  Anae109_1498  GAF sensor signal transduction histidine kinase  39.76 
 
 
1070 aa  155  1e-36  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.308131  normal  0.537019 
 
 
-
 
NC_007760  Adeh_1623  PAS/PAC sensor signal transduction histidine kinase  40.53 
 
 
377 aa  154  2.9999999999999998e-36  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.632325  n/a   
 
 
-
 
NC_013440  Hoch_3251  response regulator receiver sensor signal transduction histidine kinase  30.27 
 
 
418 aa  153  5e-36  Haliangium ochraceum DSM 14365  Bacteria  normal  0.35487  normal  0.0265543 
 
 
-
 
NC_009675  Anae109_2235  multi-sensor signal transduction histidine kinase  38.89 
 
 
716 aa  152  1e-35  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.530022  normal  0.014643 
 
 
-
 
NC_011145  AnaeK_0802  GAF sensor signal transduction histidine kinase  41.84 
 
 
587 aa  152  1e-35  Anaeromyxobacter sp. K  Bacteria  normal  0.773486  n/a   
 
 
-
 
NC_011891  A2cp1_0806  GAF sensor signal transduction histidine kinase  41.84 
 
 
587 aa  151  2e-35  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  30.53 
 
 
378 aa  150  3e-35  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_011145  AnaeK_2237  PAS/PAC sensor signal transduction histidine kinase  40.85 
 
 
381 aa  150  4e-35  Anaeromyxobacter sp. K  Bacteria  normal  0.5102  n/a   
 
 
-
 
NC_011891  A2cp1_2325  PAS/PAC sensor signal transduction histidine kinase  40.85 
 
 
381 aa  150  5e-35  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.830525  n/a   
 
 
-
 
NC_014248  Aazo_0932  response regulator receiver sensor signal transduction histidine kinase  30 
 
 
374 aa  149  7e-35  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2805  multi-sensor signal transduction histidine kinase  41.28 
 
 
1070 aa  149  7e-35  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0755  GAF sensor signal transduction histidine kinase  41.28 
 
 
588 aa  148  1.0000000000000001e-34  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.452305  n/a   
 
 
-
 
NC_013510  Tcur_2645  response regulator receiver protein  51.02 
 
 
215 aa  147  2.0000000000000003e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  0.492308  n/a   
 
 
-
 
NC_009675  Anae109_2663  multi-sensor signal transduction histidine kinase  32.77 
 
 
979 aa  147  3e-34  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.366427 
 
 
-
 
NC_011891  A2cp1_2991  GAF sensor signal transduction histidine kinase  40 
 
 
1069 aa  146  7.0000000000000006e-34  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2900  multi-sensor signal transduction histidine kinase  40.43 
 
 
1069 aa  146  8.000000000000001e-34  Anaeromyxobacter sp. K  Bacteria  normal  0.095908  n/a   
 
 
-
 
NC_008044  TM1040_2746  multi-sensor hybrid histidine kinase  37.87 
 
 
1096 aa  145  1e-33  Ruegeria sp. TM1040  Bacteria  normal  0.455726  normal 
 
 
-
 
NC_007348  Reut_B4539  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  32.41 
 
 
1152 aa  145  2e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.329946  n/a   
 
 
-
 
NC_009675  Anae109_4211  PAS/PAC sensor signal transduction histidine kinase  36 
 
 
403 aa  145  2e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.108613  normal 
 
 
-
 
NC_008254  Meso_1944  signal transduction histidine kinase  54.62 
 
 
507 aa  145  2e-33  Chelativorans sp. BNC1  Bacteria  normal  0.0183597  n/a   
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  30.56 
 
 
383 aa  144  4e-33  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0395  multi-sensor signal transduction histidine kinase  37.55 
 
 
509 aa  143  4e-33  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1964  response regulator receiver sensor signal transduction histidine kinase  28.27 
 
 
427 aa  142  7e-33  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00543356  normal  0.092514 
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  30.48 
 
 
383 aa  143  7e-33  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011145  AnaeK_4252  multi-sensor signal transduction histidine kinase  37.64 
 
 
712 aa  142  8e-33  Anaeromyxobacter sp. K  Bacteria  normal  0.374039  n/a   
 
 
-
 
NC_013440  Hoch_5118  integral membrane sensor hybrid histidine kinase  30.77 
 
 
837 aa  142  9e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.657918 
 
 
-
 
NC_013440  Hoch_5143  response regulator receiver sensor signal transduction histidine kinase  28.68 
 
 
408 aa  142  9e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19932  normal 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  30.49 
 
 
397 aa  142  9.999999999999999e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_011831  Cagg_2626  response regulator receiver sensor signal transduction histidine kinase  29.07 
 
 
392 aa  142  9.999999999999999e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0500  response regulator receiver sensor signal transduction histidine kinase  28.61 
 
 
373 aa  142  9.999999999999999e-33  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013037  Dfer_5317  PAS/PAC sensor signal transduction histidine kinase  30.34 
 
 
421 aa  141  1.9999999999999998e-32  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_007413  Ava_1561  response regulator receiver Signal transduction histidine kinase  29.8 
 
 
443 aa  141  1.9999999999999998e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.414952 
 
 
-
 
NC_007492  Pfl01_5255  diguanylate cyclase/phosphodiesterase  51.09 
 
 
707 aa  141  1.9999999999999998e-32  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.864356  normal 
 
 
-
 
NC_011891  A2cp1_4275  multi-sensor signal transduction histidine kinase  37.27 
 
 
712 aa  140  3e-32  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3365  multi-sensor signal transduction histidine kinase  36.91 
 
 
733 aa  140  3e-32  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0400  response regulator receiver protein  46.88 
 
 
210 aa  140  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3616  response regulator receiver Signal transduction histidine kinase  27.27 
 
 
393 aa  140  3.9999999999999997e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159723  normal  0.789101 
 
 
-
 
NC_010524  Lcho_1401  response regulator receiver sensor signal transduction histidine kinase  30.75 
 
 
384 aa  140  3.9999999999999997e-32  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011145  AnaeK_0539  PAS/PAC sensor signal transduction histidine kinase  35.04 
 
 
383 aa  140  4.999999999999999e-32  Anaeromyxobacter sp. K  Bacteria  normal  0.143908  n/a   
 
 
-
 
NC_011891  A2cp1_0535  PAS/PAC sensor signal transduction histidine kinase  35.04 
 
 
383 aa  140  6e-32  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.175177  n/a   
 
 
-
 
NC_011729  PCC7424_1421  response regulator receiver sensor signal transduction histidine kinase  29.17 
 
 
404 aa  139  7.999999999999999e-32  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_1562  response regulator receiver Signal transduction histidine kinase  28.14 
 
 
369 aa  139  1e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  0.847548  normal  0.236297 
 
 
-
 
NC_009831  Ssed_1645  hypothetical protein  50.7 
 
 
344 aa  138  2e-31  Shewanella sediminis HAW-EB3  Bacteria  normal  0.176846  normal 
 
 
-
 
NC_010644  Emin_1198  response regulator receiver sensor signal transduction histidine kinase  27.39 
 
 
375 aa  137  2e-31  Elusimicrobium minutum Pei191  Bacteria  normal  hitchhiker  0.00328285 
 
 
-
 
NC_007519  Dde_1941  response regulator receiver sensor signal transduction histidine kinase  28.99 
 
 
395 aa  138  2e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0596409  n/a   
 
 
-
 
NC_007760  Adeh_0506  PAS/PAC sensor signal transduction histidine kinase  35.62 
 
 
383 aa  137  2e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0134  histidine kinase  31.88 
 
 
547 aa  137  3.0000000000000003e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0184  response regulator receiver protein  47.02 
 
 
210 aa  137  5e-31  Thermobispora bispora DSM 43833  Bacteria  normal  0.186811  normal  0.929424 
 
 
-
 
NC_011884  Cyan7425_4608  multi-sensor signal transduction histidine kinase  30.71 
 
 
1645 aa  136  6.0000000000000005e-31  Cyanothece sp. PCC 7425  Bacteria  normal  0.284957  normal  0.407853 
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  26.09 
 
 
395 aa  136  8e-31  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  26.09 
 
 
395 aa  136  8e-31  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_0037  response regulator receiver sensor signal transduction histidine kinase  29.87 
 
 
387 aa  135  9.999999999999999e-31  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
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