More than 300 homologs were found in PanDaTox collection
for query gene PP_3758 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_3758  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
408 aa  826    Pseudomonas putida KT2440  Bacteria  normal  normal  0.734482 
 
 
-
 
NC_009512  Pput_2005  response regulator receiver sensor signal transduction histidine kinase  98.28 
 
 
408 aa  814    Pseudomonas putida F1  Bacteria  normal  normal  0.343751 
 
 
-
 
NC_010322  PputGB1_2145  response regulator receiver sensor signal transduction histidine kinase  91.4 
 
 
408 aa  753    Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.001377 
 
 
-
 
NC_010501  PputW619_2109  response regulator receiver sensor signal transduction histidine kinase  89.19 
 
 
408 aa  744    Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2649  response regulator receiver Signal transduction histidine kinase  71.5 
 
 
404 aa  585  1e-166  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.699737 
 
 
-
 
NC_004578  PSPTO_2715  sensor histidine kinase/response regulator  71.5 
 
 
393 aa  568  1e-161  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.615592  n/a   
 
 
-
 
NC_007005  Psyr_2448  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  71.5 
 
 
393 aa  569  1e-161  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.760608  hitchhiker  0.00120668 
 
 
-
 
NC_009439  Pmen_0172  response regulator receiver sensor signal transduction histidine kinase  63.52 
 
 
395 aa  495  1e-139  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_2802  response regulator receiver sensor signal transduction histidine kinase  59.5 
 
 
406 aa  476  1e-133  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2590  response regulator receiver sensor signal transduction histidine kinase  58.4 
 
 
405 aa  462  1e-129  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.413696 
 
 
-
 
NC_008781  Pnap_1070  response regulator receiver sensor signal transduction histidine kinase  60.46 
 
 
402 aa  460  9.999999999999999e-129  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.947697  normal  0.86399 
 
 
-
 
NC_011984  Avi_9098  bacteriophytochrome protein  39.6 
 
 
378 aa  258  1e-67  Agrobacterium vitis S4  Bacteria  normal  0.384054  n/a   
 
 
-
 
NC_011992  Dtpsy_0629  response regulator receiver sensor signal transduction histidine kinase  41.71 
 
 
382 aa  257  2e-67  Acidovorax ebreus TPSY  Bacteria  normal  0.67365  n/a   
 
 
-
 
NC_013216  Dtox_3783  histidine kinase  39.12 
 
 
544 aa  255  1.0000000000000001e-66  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.401083  normal 
 
 
-
 
NC_008782  Ajs_0650  response regulator receiver sensor signal transduction histidine kinase  41 
 
 
382 aa  254  3e-66  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3993  response regulator receiver sensor signal transduction histidine kinase  40.15 
 
 
390 aa  252  8.000000000000001e-66  Acidovorax citrulli AAC00-1  Bacteria  normal  0.967169  normal 
 
 
-
 
NC_010623  Bphy_4207  response regulator receiver sensor signal transduction histidine kinase  37.06 
 
 
370 aa  243  6e-63  Burkholderia phymatum STM815  Bacteria  normal  normal  0.728065 
 
 
-
 
NC_013061  Phep_4249  ATP-binding region ATPase domain protein  36.87 
 
 
374 aa  239  5.999999999999999e-62  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1740  response regulator receiver sensor signal transduction histidine kinase  38.39 
 
 
377 aa  237  2e-61  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.129887 
 
 
-
 
NC_010002  Daci_3828  response regulator receiver sensor signal transduction histidine kinase  40.46 
 
 
392 aa  235  1.0000000000000001e-60  Delftia acidovorans SPH-1  Bacteria  normal  0.287383  normal  0.140943 
 
 
-
 
NC_007952  Bxe_B1219  response regulator receiver sensor signal transduction histidine kinase  35.45 
 
 
375 aa  232  7.000000000000001e-60  Burkholderia xenovorans LB400  Bacteria  normal  0.745377  normal  0.599724 
 
 
-
 
NC_011884  Cyan7425_3767  response regulator receiver sensor hybrid histidine kinase  38.44 
 
 
587 aa  231  2e-59  Cyanothece sp. PCC 7425  Bacteria  normal  0.634012  normal 
 
 
-
 
NC_009507  Swit_5356  response regulator receiver sensor signal transduction histidine kinase  36.68 
 
 
377 aa  231  2e-59  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.940445 
 
 
-
 
NC_010676  Bphyt_5387  response regulator receiver sensor signal transduction histidine kinase  34.74 
 
 
375 aa  228  1e-58  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0971839 
 
 
-
 
NC_013061  Phep_0585  ATP-binding region ATPase domain protein  34.68 
 
 
528 aa  221  9.999999999999999e-57  Pedobacter heparinus DSM 2366  Bacteria  normal  0.215545  normal 
 
 
-
 
NC_013440  Hoch_6238  histidine kinase  32.92 
 
 
519 aa  199  6e-50  Haliangium ochraceum DSM 14365  Bacteria  normal  0.547868  normal 
 
 
-
 
NC_013440  Hoch_2075  response regulator receiver sensor hybrid histidine kinase  34.68 
 
 
572 aa  196  5.000000000000001e-49  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1867  GAF sensor signal transduction histidine kinase  42.62 
 
 
763 aa  195  1e-48  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2639  response regulator receiver sensor signal transduction histidine kinase  34.4 
 
 
396 aa  194  2e-48  Geobacter metallireducens GS-15  Bacteria  normal  0.136447  normal  0.717158 
 
 
-
 
NC_011145  AnaeK_1788  GAF sensor signal transduction histidine kinase  42.21 
 
 
763 aa  193  6e-48  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2090  GAF sensor signal transduction histidine kinase  41.8 
 
 
763 aa  192  1e-47  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.163656  n/a   
 
 
-
 
NC_009675  Anae109_2142  histidine kinase  42.4 
 
 
502 aa  190  5e-47  Anaeromyxobacter sp. Fw109-5  Bacteria  decreased coverage  0.000590991  normal  0.0793761 
 
 
-
 
NC_009675  Anae109_1722  GAF sensor signal transduction histidine kinase  42.61 
 
 
763 aa  189  5e-47  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.418059 
 
 
-
 
NC_009012  Cthe_0286  response regulator receiver sensor signal transduction histidine kinase  31.5 
 
 
424 aa  187  3e-46  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.136894  n/a   
 
 
-
 
NC_009675  Anae109_2560  PAS/PAC sensor signal transduction histidine kinase  43.16 
 
 
518 aa  183  5.0000000000000004e-45  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.315276 
 
 
-
 
NC_008576  Mmc1_3693  histidine kinase  30.39 
 
 
667 aa  183  5.0000000000000004e-45  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_3864  multi-sensor signal transduction histidine kinase  42.92 
 
 
592 aa  183  6e-45  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.130733  n/a   
 
 
-
 
NC_011145  AnaeK_3781  multi-sensor signal transduction histidine kinase  42.92 
 
 
592 aa  182  8.000000000000001e-45  Anaeromyxobacter sp. K  Bacteria  normal  0.233259  n/a   
 
 
-
 
NC_013132  Cpin_0324  response regulator receiver sensor signal transduction histidine kinase  31.52 
 
 
424 aa  181  2e-44  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.046409  normal 
 
 
-
 
NC_007760  Adeh_3724  multi-sensor signal transduction histidine kinase  42.92 
 
 
592 aa  180  4e-44  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3271  PAS/PAC sensor hybrid histidine kinase  31.86 
 
 
1691 aa  180  4e-44  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3355  response regulator receiver sensor signal transduction histidine kinase  29.16 
 
 
405 aa  179  5.999999999999999e-44  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1498  GAF sensor signal transduction histidine kinase  41.2 
 
 
1070 aa  178  1e-43  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.308131  normal  0.537019 
 
 
-
 
NC_009675  Anae109_2188  PAS/PAC sensor signal transduction histidine kinase  44.05 
 
 
413 aa  172  7.999999999999999e-42  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.925316 
 
 
-
 
NC_009675  Anae109_3853  multi-sensor signal transduction histidine kinase  35.44 
 
 
591 aa  172  1e-41  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1623  PAS/PAC sensor signal transduction histidine kinase  42.48 
 
 
377 aa  170  4e-41  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.632325  n/a   
 
 
-
 
NC_009675  Anae109_0792  GAF sensor signal transduction histidine kinase  42.04 
 
 
592 aa  170  5e-41  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.389456  hitchhiker  0.00398352 
 
 
-
 
NC_009675  Anae109_2235  multi-sensor signal transduction histidine kinase  40.6 
 
 
716 aa  170  5e-41  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.530022  normal  0.014643 
 
 
-
 
NC_013132  Cpin_2260  response regulator receiver sensor signal transduction histidine kinase  31.9 
 
 
361 aa  167  4e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.208609  normal 
 
 
-
 
NC_011145  AnaeK_0395  multi-sensor signal transduction histidine kinase  41.32 
 
 
509 aa  166  5e-40  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2325  PAS/PAC sensor signal transduction histidine kinase  43.23 
 
 
381 aa  165  2.0000000000000002e-39  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.830525  n/a   
 
 
-
 
NC_011145  AnaeK_2237  PAS/PAC sensor signal transduction histidine kinase  43.23 
 
 
381 aa  165  2.0000000000000002e-39  Anaeromyxobacter sp. K  Bacteria  normal  0.5102  n/a   
 
 
-
 
NC_007348  Reut_B4539  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  33.08 
 
 
1152 aa  163  5.0000000000000005e-39  Ralstonia eutropha JMP134  Bacteria  normal  0.329946  n/a   
 
 
-
 
NC_009675  Anae109_2823  histidine kinase  39.09 
 
 
501 aa  162  7e-39  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_2991  GAF sensor signal transduction histidine kinase  42.24 
 
 
1069 aa  161  2e-38  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0506  PAS/PAC sensor signal transduction histidine kinase  38.72 
 
 
383 aa  159  8e-38  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0539  PAS/PAC sensor signal transduction histidine kinase  36.86 
 
 
383 aa  159  1e-37  Anaeromyxobacter sp. K  Bacteria  normal  0.143908  n/a   
 
 
-
 
NC_011145  AnaeK_2900  multi-sensor signal transduction histidine kinase  41.81 
 
 
1069 aa  159  1e-37  Anaeromyxobacter sp. K  Bacteria  normal  0.095908  n/a   
 
 
-
 
NC_011891  A2cp1_0535  PAS/PAC sensor signal transduction histidine kinase  36.86 
 
 
383 aa  159  1e-37  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.175177  n/a   
 
 
-
 
NC_011145  AnaeK_4252  multi-sensor signal transduction histidine kinase  39.15 
 
 
712 aa  158  1e-37  Anaeromyxobacter sp. K  Bacteria  normal  0.374039  n/a   
 
 
-
 
NC_007413  Ava_1561  response regulator receiver Signal transduction histidine kinase  31.94 
 
 
443 aa  158  2e-37  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.414952 
 
 
-
 
NC_011891  A2cp1_4275  multi-sensor signal transduction histidine kinase  38.79 
 
 
712 aa  158  2e-37  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  30.38 
 
 
378 aa  157  3e-37  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_007760  Adeh_2805  multi-sensor signal transduction histidine kinase  41.81 
 
 
1070 aa  157  4e-37  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4211  PAS/PAC sensor signal transduction histidine kinase  39.83 
 
 
403 aa  155  9e-37  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.108613  normal 
 
 
-
 
NC_011891  A2cp1_0806  GAF sensor signal transduction histidine kinase  38.3 
 
 
587 aa  155  1e-36  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0802  GAF sensor signal transduction histidine kinase  38.3 
 
 
587 aa  155  1e-36  Anaeromyxobacter sp. K  Bacteria  normal  0.773486  n/a   
 
 
-
 
NC_013440  Hoch_3251  response regulator receiver sensor signal transduction histidine kinase  30.45 
 
 
418 aa  155  1e-36  Haliangium ochraceum DSM 14365  Bacteria  normal  0.35487  normal  0.0265543 
 
 
-
 
NC_009972  Haur_3365  multi-sensor signal transduction histidine kinase  37.13 
 
 
733 aa  154  2.9999999999999998e-36  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0500  response regulator receiver sensor signal transduction histidine kinase  30.52 
 
 
373 aa  153  4e-36  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010644  Emin_1198  response regulator receiver sensor signal transduction histidine kinase  30.05 
 
 
375 aa  152  1e-35  Elusimicrobium minutum Pei191  Bacteria  normal  hitchhiker  0.00328285 
 
 
-
 
NC_007760  Adeh_0367  multi-sensor signal transduction histidine kinase  39.74 
 
 
507 aa  152  1e-35  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  30.28 
 
 
383 aa  151  2e-35  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_011884  Cyan7425_4608  multi-sensor signal transduction histidine kinase  32.45 
 
 
1645 aa  151  2e-35  Cyanothece sp. PCC 7425  Bacteria  normal  0.284957  normal  0.407853 
 
 
-
 
NC_011884  Cyan7425_4555  response regulator receiver sensor signal transduction histidine kinase  29.48 
 
 
406 aa  150  3e-35  Cyanothece sp. PCC 7425  Bacteria  normal  0.330139  normal  0.677797 
 
 
-
 
NC_007760  Adeh_4121  multi-sensor signal transduction histidine kinase  39.26 
 
 
712 aa  150  3e-35  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.6651  n/a   
 
 
-
 
NC_013526  Tter_2563  multi-sensor signal transduction histidine kinase  37.08 
 
 
543 aa  149  6e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_1421  response regulator receiver sensor signal transduction histidine kinase  29.68 
 
 
404 aa  149  7e-35  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008254  Meso_1944  signal transduction histidine kinase  47.77 
 
 
507 aa  149  9e-35  Chelativorans sp. BNC1  Bacteria  normal  0.0183597  n/a   
 
 
-
 
NC_007760  Adeh_0755  GAF sensor signal transduction histidine kinase  38.3 
 
 
588 aa  149  1.0000000000000001e-34  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.452305  n/a   
 
 
-
 
NC_013173  Dbac_0019  response regulator receiver modulated diguanylate cyclase  48.03 
 
 
341 aa  148  2.0000000000000003e-34  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0416556  n/a   
 
 
-
 
NC_013440  Hoch_5118  integral membrane sensor hybrid histidine kinase  30.69 
 
 
837 aa  148  2.0000000000000003e-34  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.657918 
 
 
-
 
NC_010524  Lcho_1401  response regulator receiver sensor signal transduction histidine kinase  28.37 
 
 
384 aa  147  4.0000000000000006e-34  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_1562  response regulator receiver Signal transduction histidine kinase  28.04 
 
 
369 aa  147  5e-34  Anabaena variabilis ATCC 29413  Bacteria  normal  0.847548  normal  0.236297 
 
 
-
 
NC_014248  Aazo_0931  response regulator receiver sensor signal transduction histidine kinase  30.3 
 
 
446 aa  146  5e-34  'Nostoc azollae' 0708  Bacteria  normal  0.523505  n/a   
 
 
-
 
NC_007413  Ava_3819  PAS/PAC sensor hybrid histidine kinase  37.23 
 
 
1297 aa  146  6e-34  Anabaena variabilis ATCC 29413  Bacteria  normal  0.11644  normal 
 
 
-
 
NC_012918  GM21_0057  histidine kinase  30.49 
 
 
588 aa  145  1e-33  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000000185994 
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  29.26 
 
 
383 aa  143  5e-33  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  28.26 
 
 
383 aa  143  7e-33  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009507  Swit_5353  multi-sensor hybrid histidine kinase  36.96 
 
 
1143 aa  143  7e-33  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.385348 
 
 
-
 
NC_011884  Cyan7425_4616  GAF sensor hybrid histidine kinase  37.25 
 
 
701 aa  142  8e-33  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.524944 
 
 
-
 
NC_014248  Aazo_0932  response regulator receiver sensor signal transduction histidine kinase  27.76 
 
 
374 aa  142  9e-33  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2095  GAF sensor signal transduction histidine kinase  37.39 
 
 
454 aa  142  9e-33  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1964  response regulator receiver sensor signal transduction histidine kinase  25.87 
 
 
427 aa  141  1.9999999999999998e-32  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00543356  normal  0.092514 
 
 
-
 
NC_007413  Ava_4928  multi-sensor hybrid histidine kinase  34.81 
 
 
889 aa  141  1.9999999999999998e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.338102 
 
 
-
 
NC_011145  AnaeK_2010  GAF sensor signal transduction histidine kinase  36.52 
 
 
454 aa  140  3e-32  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2209  GAF sensor signal transduction histidine kinase  36.6 
 
 
399 aa  140  3e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1941  response regulator receiver sensor signal transduction histidine kinase  30.51 
 
 
395 aa  140  3.9999999999999997e-32  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0596409  n/a   
 
 
-
 
NC_011884  Cyan7425_2570  response regulator receiver sensor signal transduction histidine kinase  28.78 
 
 
381 aa  140  3.9999999999999997e-32  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_0404  Signal transduction histidine kinase-like  35.39 
 
 
498 aa  140  3.9999999999999997e-32  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
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