| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3819 |
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| Symbol | |
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| ID | 3678751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | - |
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| Start bp | 4752313 |
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| End bp | 4756206 |
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| Gene Length | 3894 bp |
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| Protein Length | 1297 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637719171 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_324319 |
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| Protein GI | 75910023 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.11644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAATA TCCAGCGCTC TCATTTGCAG CGTTACTGTA TCTCTATTGT GTCGGTATTA
TTGTCGCTGT TGCTAGGTTT AACGCTGGGA AGATATTTAA TAGAGATTTC ACCACTGTTT
TTTGCATCTG TAGTCTTTAG TAGTTGGTAC GGCGGATTAG TACCAGGTTT AGTTGCTACA
GTCTTGGCTC TTTTAGTTAA GAATCACTTT TTTAATACAC CATTCAACTC AATAGCAGTT
AGCCAAGGTA ATGATTTACT CAATTTAATC GTGTTTGCTT CTGTAGCAGT ATTAATTAGT
TCATTAAATT TGCAAGTGCG TACTGCAAGG GAAGCGTCTG AGGTACAACT GGCTAAGTTG
AAGGTGAATT ATCGCCACTT GTTAGAGACA GCCAATGAAG GTATTTGGAT ATTTGACAGT
GAAGGAAAGA CAGAATATGT CAACCATCAG CTAGCCCAAA TGCTTGGTTA CAGCGTTGAA
CAAATCAGCA AATGCTCAAT TTTCAATTTT CTGGAACCCC AGGCGCGTGT GGAAATTGAG
CAATGGCTAG AGCAACAGCA CAAGTACCAT CAACAAACTA AACAGCAGTT TGATTTACGT
TTACAACGCC ACGATGGCGC GTCACTTTGG GTAATTGTTT CTCTCAGTTC CATACTCGAT
AAGCACGGAC AATTTTCTAG TGCGATCGCC ATGCTCACAG ATATTACAGA GCATAAGCAG
GAACCAGCAA AACCTGACCT CGAACGCCAA CGCCTACGCG CCATCCTTGA TATTCTGCCA
ATGGGAGTAG TGATTTCCGA TGCTAAAGGA CAGCTTTTAG AAATTAATCC TGGGGCAAAA
GCGATTTGGG GAGAAGATGC GCCGTTGCTC GACAATACTA GCCAATATCA TCAATATAAA
GGATGGTGGC CGGATACAGG TCAACCCCTG ACAGCAGAAG AATGGACTCT AGCCCGTACC
CTAGCTACGG GTGAGGCGAT AATTGGGGAA GAGATTGATA TTGAAACATT TAATGGCGAG
CGGAAAACCA TCCTCAACTC TGCCGTACCC ATCTGTGATG CCACTGGAAC GATAGTGAAT
GCAATCACAG TGAATGTAGA TATTACTGAG CGTAAACGGG TAGAAGCCGC TTTAAGGCAA
AGTGAAGCAC TAGCGAAAGC ACGGGCAGAA GAACTCGAAA CGATTATGGA GACTGTGCCG
GCTGCTGTCT GGATTGCACA TGATCCTCAT TGCCATTCCA TGAGTGTCAA TCGTGCTGCT
TATGAAATGA TGCGAGTACC AGCAGGTTCT GTGATGACCG CAACCCCGGC CAGTGGAGGA
TATCCCTTTC CTTTTAAAAT CCAAAAAAAT GGTCAAGATG TTCCTCTGAA TGAGTTGGCA
ATGCAGCAAG CCGGACTGAC TGGGCAAGAG GTGGAGGCGG AGGTTGAATT TGTCTTCAGC
TCGGAGGATG TACGGCATAT TTACGGTAAG GCTACACCCT TGTGCGATCC AGATGGTAAT
GTCCGGGGAG TGATTGGGGC ATTTTTGGAT GTCACTGAAC GCCAACAGTT AATGTCTTTG
TTACAACAAA AACAAGAATG GCTCGATTTA GCACAGAAGT CTGGAAAAAT TGGCAGTTTT
GACTGGAAAT TGGCTAGTAA TATCAATATT TGGTCACAAG AGTTAGAAGA AATTTATGGT
TTGCAGCCTG GTGAGTTTGG CGGTACTTTT GAAGACTGGG CAAAACGTGT TCATCCTGAT
GATTTAGCTA GGGTAAAAGT GGAATTACAG GAATTGTTGA ACACAGGCTC GAAGGAATTT
TTTAGTGATT TTCGCATCAT TCGTCAGGAT GGAAGCCTTT GTTGGCTACA GTCGAGAGCC
AGAGTTTTCT ATGATGATCA TGGTCAGCCA TTACGGATGG TGGGAGTAAA TATCGATGTG
ACTGAGCGCA AACAGGCAGA AGCAGCGCTA CAGCAAAGCG AGGCTCGACT AAAACAGTTA
TTGCAATCGA GCATTATTGG TATTATTGAG GCAGATTCAG AACGAATTAA TTTTGCTAAC
GATGCCTTCC TGAAAATTGT GGGCTATACC CAGGAAGACT TGCTCACAGG AAAGTTGCGT
TGGCAAGACA TGACTCCACT AGAATACAGT GAACTGGATC AAGCCAAGGT ACAAGAAGTC
ATCAACGCTG GGTTCTGCAT TCCCTTTGAG AAAGAATATA TCCGTAAAGA CGGCTCTCGT
GTTCCTATTT TATTAGGTGC TGCCCGATTG AGTTCCAGCC CCTTAACATG GGTTTGCTTT
ATTCTAGATT TAACTGCTCG CAAACAAGCA GAAGCAGCAT TACAACAAAG TGAATTGATG
TTCCGCACAT TAGCGGACAC CATGCCGCAA ATGTTTTGGA TTACCCAGCC TAATGGCTAC
CATGAGTATT TCAATCAACG TTGGTATGAC TATACAGGAA CGACATTAGA ACAAACCCAA
GGCGAAGGGT GGCAAAAGAT TCTCCATCCC GATGATGTGC AACGCACCAT AGAACAATGG
CAAGATAGCC TCGATACTGG CAAAGATTAT GATATTGAGT ATCGTTTGCG TCGTGCTGCT
GACGGGGAAT ATCGTTGGCA TTTAGGTAGA GCCTTTCCAC TAAGAGATGA AAATGGTCAA
ATGGTGAAAT GGTTTGGTTC CTGCACAGAT ATTCATGACC AAAAGCTAGC AATTGAAGAA
CGCGCCCAGG CGTGGGAACA GGAACGTGCC GCCAGGATAG AATTAGAACG AGCCAACCGG
ATGAAAGATG ATTTCTTGGC AATAGTCTCT CACGAGTTGC GATCGCCTCT CAATCCCATT
CTCGGTTGGG CAAAACTCCT CAAGAGCCGC AAACTGGATG CACTCAAGAC TAATCAAGCC
CTAGAAGTTA TCGAACGTAA TGCCAAATTA CAAGCCGGGT TAATCGACGA TTTACTAGAT
GTTTCCCGAA TTTTACGCGG TAAGCTGAGT TTGAATGTCT GCACAGTGGA CTTAGTAACC
ACCATCGAAG CCGCATTGGA AACTGTACGC TTAACGGCTG AAAGTAAATC GATTCACATC
CAAACGGATT TGACTGCCAG TGTGTGTAGA GTTGAAGGCG ATCCCAACCG TTTACAACAA
GTTGTGTGGA ATCTACTGAG TAACGCCGTA AAATTTACAC CGGAAGGTGG TGAGATAGAA
GTCAAGCTAG AAAGAGTTGG TTCTTTAGCC CACATTCAAG TCAGGGATAC AGGAAAAGGT
ATTAGTCTCG ACTTTCTCCC CTATGTGTTT GAACGCTTCC GCCAAGCCGA CGAGGTGACA
ACGAGAAAAT TCGGTGGATT AGGGTTAGGG TTAGCCATAG TCCGTCATCT TGTAGAACTC
CACGGCGGTT CTGTCCAGGT AACAAGCCCA GGTGAAGGAT TAGGCACAAC ATTTACCGTC
AAACTACCCC TAGTTGCTGT TTCGCAGATA TATGAAGAGC ATTTTATCCC AGACACCACC
CCAAATCTGC AAGGCTTGCG AATGGTAGTT GTAGATGATG ATGCCGATAC TTTAGAATTG
CTCAGTTTTA TTCTGGAACA GTATGGAGTG GAAGTTAAAG CAGTCAATTC AGCAAATGAA
GCATTGGAGG CGATCGCCCA AAGCAAACCA GATTTATTAT TAAGTGATAT TGGAATGCCA
GAAGTTGACG GCTATATGCT GATTAAGCAA ATCAGAAGTA TGGAAGTAGC ATTAGGCACA
AAACTACCAG CGATCGCCCT CACCGCCTTT GCTGGCGAAA CCAACTTTCA AAAGATTATG
TCTGCTGGCT TCCAAAGGCA TCTAACCAAG CCTGTAGAAC CATCGGAACT AGCCACAGTC
ATAGCCAACC TAATTCAAAG TAATACCAAT TTGAAAAAAG CATCCGACAA ATAA
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| Protein sequence | MSNIQRSHLQ RYCISIVSVL LSLLLGLTLG RYLIEISPLF FASVVFSSWY GGLVPGLVAT
VLALLVKNHF FNTPFNSIAV SQGNDLLNLI VFASVAVLIS SLNLQVRTAR EASEVQLAKL
KVNYRHLLET ANEGIWIFDS EGKTEYVNHQ LAQMLGYSVE QISKCSIFNF LEPQARVEIE
QWLEQQHKYH QQTKQQFDLR LQRHDGASLW VIVSLSSILD KHGQFSSAIA MLTDITEHKQ
EPAKPDLERQ RLRAILDILP MGVVISDAKG QLLEINPGAK AIWGEDAPLL DNTSQYHQYK
GWWPDTGQPL TAEEWTLART LATGEAIIGE EIDIETFNGE RKTILNSAVP ICDATGTIVN
AITVNVDITE RKRVEAALRQ SEALAKARAE ELETIMETVP AAVWIAHDPH CHSMSVNRAA
YEMMRVPAGS VMTATPASGG YPFPFKIQKN GQDVPLNELA MQQAGLTGQE VEAEVEFVFS
SEDVRHIYGK ATPLCDPDGN VRGVIGAFLD VTERQQLMSL LQQKQEWLDL AQKSGKIGSF
DWKLASNINI WSQELEEIYG LQPGEFGGTF EDWAKRVHPD DLARVKVELQ ELLNTGSKEF
FSDFRIIRQD GSLCWLQSRA RVFYDDHGQP LRMVGVNIDV TERKQAEAAL QQSEARLKQL
LQSSIIGIIE ADSERINFAN DAFLKIVGYT QEDLLTGKLR WQDMTPLEYS ELDQAKVQEV
INAGFCIPFE KEYIRKDGSR VPILLGAARL SSSPLTWVCF ILDLTARKQA EAALQQSELM
FRTLADTMPQ MFWITQPNGY HEYFNQRWYD YTGTTLEQTQ GEGWQKILHP DDVQRTIEQW
QDSLDTGKDY DIEYRLRRAA DGEYRWHLGR AFPLRDENGQ MVKWFGSCTD IHDQKLAIEE
RAQAWEQERA ARIELERANR MKDDFLAIVS HELRSPLNPI LGWAKLLKSR KLDALKTNQA
LEVIERNAKL QAGLIDDLLD VSRILRGKLS LNVCTVDLVT TIEAALETVR LTAESKSIHI
QTDLTASVCR VEGDPNRLQQ VVWNLLSNAV KFTPEGGEIE VKLERVGSLA HIQVRDTGKG
ISLDFLPYVF ERFRQADEVT TRKFGGLGLG LAIVRHLVEL HGGSVQVTSP GEGLGTTFTV
KLPLVAVSQI YEEHFIPDTT PNLQGLRMVV VDDDADTLEL LSFILEQYGV EVKAVNSANE
ALEAIAQSKP DLLLSDIGMP EVDGYMLIKQ IRSMEVALGT KLPAIALTAF AGETNFQKIM
SAGFQRHLTK PVEPSELATV IANLIQSNTN LKKASDK
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