| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4959 |
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| Symbol | |
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| ID | 1042674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5649061 |
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| End bp | 5651187 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637148360 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | NP_747062 |
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| Protein GI | 26991637 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.714982 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGGCG CTTACCCTCA ACAGCAGCCA CTGGATGGCA GCTCAGTTCT TCTGGTGGTA
GACGACTACC CCGAGAACCT CATCAGCATG CGGGCCTTGC TGGCCCGGCA GGATTGGCAA
GTATTGACGG CAAGCTCTGG GATAGAAGCC TTGAGCGCGT TGCTTGAATA CGAAGTCGAC
CTGGTGTTGA TGGATGTACA GATGCCGGAA ATGGACGGCT TTGAAGTCGC CCGGCTGATG
CGCGGCAATC AGCGTACCCG ACTGACCCCG ATCATTTTCC TCACCGCCAA CGAAAAGTCC
GAAGCGGCCG TGCTCAAAGG CTACGCCAGC GGCGCCGTGG ACTACATGTT CAAACCGTTC
GACCCACAAA TCCTCAAGCC CAAGGTCCAG GCGCTGCTCG ACCAGCAGCG CAACCGGCGC
ATGCTGCAGC AGCTGAGTCG TGAGCTGGAG ACGGCCAGGG CCTTCAATGC GTCCATCCTG
GAAAATGCCG CCGAAGGCAT TCTGGTGGTT GATGCCCATG GCATCATCCG TTTTGCCAAT
CCGGCCATTT CCCGTTTGCT GGCGGCACCG GTGCAACACC TGCAGGGCAC CCAATTGCTC
GACGTTGTGC AACTGACCAG TACCAGCCTG TGGCGCGAGT CGGACTTCTA CAAGGCCTAC
CAGGGGCGGC AGATCTACCG CGTACACGAT GCCCAACTGC GTACCCAAGG CGGTGAGCTT
GTGCCGGTGG CGCTGTCCTG TGCGCCGTTG CCGGCCGATC AACAGGCCAT GGTGGTGACC
GTGCTGGACA TGTCGGCAGT GCGTAACTTG CACCAGCAGC TGGAATACCA GGCCATTACT
GACCCGCTAA CCGGCCTGCT CAACCGCCGT GGTTTCTACC AGGCGGCTGA AGGTGCACTG
TTGCGCAACG AGCGCTCTGA CAAGGCGCAG GCGCTGATGT ACATGGACCT GGATGGCTTC
AAGCGCATCA ACGACTCGCT CGGCCACGAC GCGGGCGACC GGGTGTTGCG CTGGGTGGCC
GAGCAGCTCA AGGACTGCCT GGGCAGTGAG GCCTTGCTGG CGCGTATGGG CGGTGATGAG
TTCACTGCAC TGTTTGACAG CTTGCCCTAC CCGGAGCAGG CCGGGCGTTT TGCCGAACGG
TTGCTCGAAC GTGTTTCCAT CAGCCATGAG GTAGACGGGC TCGATGTGTG CCTTGGGGTC
AGCATCGGCA TTGCCACCTA CCCGGACTGT GGCGCCAATG TCGAAGGCCT GCTGCGTTCG
GCCGATGCAG CAATGTACGC AGCCAAGCAA GCGGGGCGTC AGCAATACCG CTTCTACGAC
CAGGAACTCA ACGGACGGGC GCGCTCGCGA TTGATGCTCG AGGACAGCGT GCGCATGGCC
ATCGAGCAGC AGGACTTTAC CTTGGTGTAC CAGCCACAGG TCGCCTTCCA CGATGGCCGC
CTGCGTGGTT TCGAGGCCTT GCTGCGCTGG CAGCACCCCA GCGTTGGCGA TGTGCCGCCG
GGGCTGTTCA TCCCGTTGCT GGAAGAAGCA CGGCTGATCA ACCGCCTGGC CAGCTGGATC
TACCGCCAGG GGGCCGCCCA GCGGCAGGCC TGGTACGACC GGTTTCCGCC GGACCTTGTG
CTCGGCATCA GCCTGAGCCG CGCGCAGTTC GTCATGCCTG GCCTGGTCGA AGAGCTGCAA
CGGGTCATCC AGCTTTACCA GCTTGTCCCG ACGCAGTTGG AGGTGGAAGT GGCGGAAACG
TCGCTGATGT ATAACATCGA CGCGGCCGTC AAACAGATAC ACCGCTTGCG TGAGCTGGGC
GTGAGGGTGG CCCTGGATGA CTTCGGTGCG GGTGACTGTT CGTTGCGCAT GCTGCGCGAC
CTGCCTATCG ACACCCTCAA GCTTGACCGT CATCTGGTGG CACGTCTGCC CGATTCGACG
GTAGATGCTG CGTTGGTTCG CAGCGTGATC GGCCTGTGCG CCGACTACCG TATCACGGTG
ATCGCCGAGG GTGTGGAGAC CCCGGCGCAG GCCGCCTGGC TAAAGGCCAA TGGTTGCGAA
TACGTTCAGG GTTTCCTGGT GGCTTATCCG ATGACCGCGA CTGACGCTAG CGGCTTCCCG
GCAATTTTCT CCTGGCCAGG GCCGTGA
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| Protein sequence | MDGAYPQQQP LDGSSVLLVV DDYPENLISM RALLARQDWQ VLTASSGIEA LSALLEYEVD
LVLMDVQMPE MDGFEVARLM RGNQRTRLTP IIFLTANEKS EAAVLKGYAS GAVDYMFKPF
DPQILKPKVQ ALLDQQRNRR MLQQLSRELE TARAFNASIL ENAAEGILVV DAHGIIRFAN
PAISRLLAAP VQHLQGTQLL DVVQLTSTSL WRESDFYKAY QGRQIYRVHD AQLRTQGGEL
VPVALSCAPL PADQQAMVVT VLDMSAVRNL HQQLEYQAIT DPLTGLLNRR GFYQAAEGAL
LRNERSDKAQ ALMYMDLDGF KRINDSLGHD AGDRVLRWVA EQLKDCLGSE ALLARMGGDE
FTALFDSLPY PEQAGRFAER LLERVSISHE VDGLDVCLGV SIGIATYPDC GANVEGLLRS
ADAAMYAAKQ AGRQQYRFYD QELNGRARSR LMLEDSVRMA IEQQDFTLVY QPQVAFHDGR
LRGFEALLRW QHPSVGDVPP GLFIPLLEEA RLINRLASWI YRQGAAQRQA WYDRFPPDLV
LGISLSRAQF VMPGLVEELQ RVIQLYQLVP TQLEVEVAET SLMYNIDAAV KQIHRLRELG
VRVALDDFGA GDCSLRMLRD LPIDTLKLDR HLVARLPDST VDAALVRSVI GLCADYRITV
IAEGVETPAQ AAWLKANGCE YVQGFLVAYP MTATDASGFP AIFSWPGP
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