| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4783 |
|---|
| Symbol | |
|---|
| ID | 3679436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 6013330 |
|---|
| End bp | 6015372 |
|---|
| Gene Length | 2043 bp |
|---|
| Protein Length | 680 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637720139 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_325275 |
|---|
| Protein GI | 75910979 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.302794 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCAG AACCCAAAGT CAACATCCTC CTAGTGGATG ATAAAGTGGA AAATTTACTG
GCACTAGAGG CAATTTTGGA GCGTCTAGGC GCTAATTTAG TCAGGGCGAC TTCTGGGGAG
GAAGCTTTGC GGTGTCTGCT GCATCAAGAT TTTGCAGTAA TTTTGTTAGA TGTACAGATG
CCGGGGATGG ATGGTTTTGA AACAGCCACC CTCATTCGTA ATCGTGGGCG ATCGCGCCAA
ACTCCGATTA TCTTTCTCAC GGCTTTCAGT ACCAGTGACC AAATGCTATT CAAGGGTTAT
GCACTAGGGG CGGTTGATTA TCTCCTCAAA CCCATAGATG CAAATATTCT CACTTCTAAG
GTGACAGTAT TTGTTGAACT TTTTAAGAAA ACTCAAGCCA TCCAACGTCA AGCAGCGCAA
CTAGCGGCGA TTAATGCCGA ACTAAGACAA AGTGAAGAAC GCTTCCGTTC TTTAAGTACC
TGTTCACCCA TAGGTATATT TGAAACCGAT ACCGCAGGAT GTTGTAAATA TACAAATCCC
CGCTATCAAG CAATTTGTGG CTTGGATGCG ACAGAGAGTC TAGATAAAAG ATGGCTAGAA
TCTGTGCATC CAGAAGATCA GGAAAGAGCG ATCGCTAGTT GGTCTACTTA TATTGATCAA
GGCGGCGACT ATTCAGATGA ATTCCGCTTT CAAACAGTTG ATGGTAGCCT GCGATGGGTG
CAAGTACGCT CCTCACCAAT GCTTTCTGGG AATGGTGAAC TACTTGGCCA TGTCGGTACA
CTTGAAGATA TTACCGCCCG TAAGCAATCC GAAGAAATTC GCGCTCAAGT AATCCGCGAA
CAAACCGCCA GACAAGAAGC AGAGGCGGCG AATCGGATGA AAGATGAATT TTTGGCTGTT
CTCTCCCATG AACTCCGCAC CCCCCTAACT TCCATGTTGG GCTGGTCAAA AATTCTCCGT
GCCAAAAAAC TAGACGAAAA AGCCACAGCC AGAGCCTTGG AAGCAATTGA ACGTAATGCT
AATTCACAAG TGCAATTAAT AGAAGATATT TTAGATGTAT CCCGGATTAT TCGCGGCCAA
CTGCGGCTAA ATTTATCTCC TGTCAACTTG ACAACTGTGG TGGAAGCGGC TCTAGAAGCA
GTGCGTCCTC TAGCAGATAC AAAAAGTATG ACCATCAACA CTGCGCTTGA CTACACCTTA
AGTCCTGTCA GTGGTGATTC TGCCAGATTA CAGCAAATTG TCTGGAATCT TCTGACTAAC
GCGATTAAGT TCACACCGAA AGAAGGTAAG GTGGAAATCC GATTAGAAGG GATAAGTGGT
GGATTATCTG ATGATTTGAC TCATGCTCAA ATCCAAGTTA TCGATACAGG AATTGGCATT
GAACGTGAAT TTCTCCCTAA AGTCTTTGAG CGTTTCCGCC AAGCAGATAG TACCACCACG
CGATCGCATA ACGGATTAGG GCTAGGGTTG GCAATTGTTC GCCATTTAGT GGAACTGCAC
AAAGGTACGA TTTTGGCAGA AAGTCCAGGT GTGGGCAAAG GAGCCACTTT TACTGTGAGA
TTTCCCCTCA TCCAAGAAAA TCGGGAACCT CGACCAGCAC CTACAGAAAA CTTTTCTGGA
GATGGGGCTA ACTCTTCCCC CCTTGCAGGC TTAAAAGTTC TCATTGTTGA CGATGAAACC
GATACTCGCA ACTTCTTAGG CTTCTTATTT GAAGAGTATG GGGCGATTTC CTCCACCAGT
GCATCAGTCG AGACTGCGTT AGCCGTCATC GACCAGTTAA AACCAGATAT CCTGATTAGC
GATATTGGTA TGGCAGAACA AGATGGTTAT ACTCTCATCC GCAAACTACG CTCCTTACCA
CCAGAACAAG GTGGAGAAAT TCCGGCGATC GCCTTAACTG CATATTCACG AGAAGAAGAC
CGCCAGCAAA TTATAGAAGC TGGGTTTCAG TATCACTTAT GCAAACCAAT TGATCCCAAC
CAATTAATTT CCGTAGTAGC CAGTATTTTC CGTCTATCCC CAGCACTAAG CAAGTTAGGG
TAA
|
|---|
| Protein sequence | MQPEPKVNIL LVDDKVENLL ALEAILERLG ANLVRATSGE EALRCLLHQD FAVILLDVQM
PGMDGFETAT LIRNRGRSRQ TPIIFLTAFS TSDQMLFKGY ALGAVDYLLK PIDANILTSK
VTVFVELFKK TQAIQRQAAQ LAAINAELRQ SEERFRSLST CSPIGIFETD TAGCCKYTNP
RYQAICGLDA TESLDKRWLE SVHPEDQERA IASWSTYIDQ GGDYSDEFRF QTVDGSLRWV
QVRSSPMLSG NGELLGHVGT LEDITARKQS EEIRAQVIRE QTARQEAEAA NRMKDEFLAV
LSHELRTPLT SMLGWSKILR AKKLDEKATA RALEAIERNA NSQVQLIEDI LDVSRIIRGQ
LRLNLSPVNL TTVVEAALEA VRPLADTKSM TINTALDYTL SPVSGDSARL QQIVWNLLTN
AIKFTPKEGK VEIRLEGISG GLSDDLTHAQ IQVIDTGIGI EREFLPKVFE RFRQADSTTT
RSHNGLGLGL AIVRHLVELH KGTILAESPG VGKGATFTVR FPLIQENREP RPAPTENFSG
DGANSSPLAG LKVLIVDDET DTRNFLGFLF EEYGAISSTS ASVETALAVI DQLKPDILIS
DIGMAEQDGY TLIRKLRSLP PEQGGEIPAI ALTAYSREED RQQIIEAGFQ YHLCKPIDPN
QLISVVASIF RLSPALSKLG
|
|---|
| |