Gene Cpin_3338 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3338 
Symbol 
ID8359504 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4102256 
End bp4103836 
Gene Length1581 bp 
Protein Length526 aa 
Translation table11 
GC content48% 
IMG OID644965511 
Productresponse regulator receiver sensor signal transduction histidine kinase 
Protein accessionYP_003123006 
Protein GI256422353 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.00782598 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATATTAA TTGTAGATGA TAAACCGGAA AACATCTTAT CCCTGCGAAA GGTCCTGGAA 
TTGCATGATT TTGAAGTAGA TACGGCGTCC TCCGGTGAAG AAGCATTGAA GAAGATACTA
AGGAATAACT ACGCGCTCAT CATACTGGAT GTACAGATGC CCAGTATGGA CGGCTTTGAA
GTTGCAGAAA CCATTTCCGG CTATAGTAAA GCAAAGGATG TACCCATCCT TTTCCTGTCA
GCAGTCAATA AAGACAAAAA ATTTATTGCC AAAGGCTACG CCTCCGGCGG ATTGGACTAC
ATTACCAAAC CCGTCGATCC GGATATCCTG CTGATGAAGG TGAAAACCTT TATTCGTTTA
TACGAGCAAA ACAGGCAATT GCAGGTCATG CACGCCTCTC TCCAACAGGA AGTAGAGGTA
CGTAAACGTG CGCAGGCAGC TCTGAATGCC AAAGTACAGG AACAACATTC CATTCTTGAA
TCACTACCAC AGGTCGCCTT TACGGCCCGG GCGGATGGTG CGGTAGAATA TGCGAACCGT
TTCTGGTTCC ACTACTCTCC TTCCCTCGGA CAATTCCCTG TCACATACGA CCAGGAGCAG
GCGCCCATCT CGGTATGGGA ACATGCCATC AAAGCAGGCC TCCCGCTGGA GAAAGAAGTC
TATCTCCATC ACCGCCTGCA TAACCATTTC CGTTGCCACC TTCTCAGGGC GATCCCCCTG
GAAGAAGATG GCCAGATTGT GAAATGGGTA GGTACTTTCA CCGATATCGC CCATCAGAAA
CAGGCCAACG AAATACTGGA GCAAAGGGTG ATAGAACGTA CACACGAACT ACAGGAAATG
AATCAGGCCC TGGAAGCCAG TAACCACGAG TTACAGCAGT TTGCTTCCGT CGCTTCTCAT
GACCTGAAAG AACCACTGCG TAAAATACAG TTATTCGGTA CCATTCTGCG TGACCGTCAT
ATCGGGACCA ATCCCGATGC CATGCAATAT ATGGAGCGTA TCGTCAGTTC TTCAGAACGC
ATGACAAGGC TGATCAACGA CCTGCTGCGC TATTCCAGGC TTTCTGCCGA TGTCTCTTTT
GAACCGGTGA ACATCAATGT AATTATCAAA GAAATACTGG CTGACCTGGA ACTGTCTGTG
CGGGATGCCT GTGCAGAGAT CACCGCCAAT GAGTTTCCGG TATTGGAAGC CGTACCAGGA
CAAATCAGAC AGGCATTACA GAACATCATC AGCAATGCAT TAAAGTTCAG TCGCGAGGGA
GTAGCGCCCT GCATCCGGAT CCATGCGGAA CGTGTCGTGG AAAAGGAATT TGATAGTCAG
CCTGCTGAAG AAGGGGCCTA TTGCCGGATT ACCATCAGCG ATAATGGCAT CGGGTTTAAT
GAGCTGTATC TGCCAAAAAT CTTTACACTG TTCCAGCGAC TGCATAGCCA TGAAGTGTAT
GAGGGAACCG GTATCGGATT GGCCATCGCA AAGAAAGTGG TCGAAAGACA TCAGGGGATT
ATTGGGGCCA GCAGTAAGGA AAATGAAGGG GCTACGTTTA TCATCGTATT GCCATTGGAG
CAAAGGCAGA TGGTTAGTTA G
 
Protein sequence
MILIVDDKPE NILSLRKVLE LHDFEVDTAS SGEEALKKIL RNNYALIILD VQMPSMDGFE 
VAETISGYSK AKDVPILFLS AVNKDKKFIA KGYASGGLDY ITKPVDPDIL LMKVKTFIRL
YEQNRQLQVM HASLQQEVEV RKRAQAALNA KVQEQHSILE SLPQVAFTAR ADGAVEYANR
FWFHYSPSLG QFPVTYDQEQ APISVWEHAI KAGLPLEKEV YLHHRLHNHF RCHLLRAIPL
EEDGQIVKWV GTFTDIAHQK QANEILEQRV IERTHELQEM NQALEASNHE LQQFASVASH
DLKEPLRKIQ LFGTILRDRH IGTNPDAMQY MERIVSSSER MTRLINDLLR YSRLSADVSF
EPVNINVIIK EILADLELSV RDACAEITAN EFPVLEAVPG QIRQALQNII SNALKFSREG
VAPCIRIHAE RVVEKEFDSQ PAEEGAYCRI TISDNGIGFN ELYLPKIFTL FQRLHSHEVY
EGTGIGLAIA KKVVERHQGI IGASSKENEG ATFIIVLPLE QRQMVS