More than 300 homologs were found in PanDaTox collection
for query gene Dhaf_3421 on replicon NC_011830
Organism: Desulfitobacterium hafniense DCB-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011830  Dhaf_3421  two component transcriptional regulator, LuxR family  100 
 
 
204 aa  424  1e-118  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6085  two component transcriptional regulator, LuxR family  27.86 
 
 
217 aa  94.7  9e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  28.28 
 
 
232 aa  92.8  3e-18  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  30.92 
 
 
219 aa  90.1  2e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  26.26 
 
 
211 aa  90.5  2e-17  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3824  response regulator receiver  29.27 
 
 
228 aa  89.7  3e-17  Salinispora tropica CNB-440  Bacteria  normal  0.206519  normal 
 
 
-
 
NC_009953  Sare_4214  two component LuxR family transcriptional regulator  28.78 
 
 
228 aa  89.4  4e-17  Salinispora arenicola CNS-205  Bacteria  normal  0.0601429  normal  0.0532868 
 
 
-
 
NC_013739  Cwoe_5726  two component transcriptional regulator, LuxR family  25.58 
 
 
228 aa  89  4e-17  Conexibacter woesei DSM 14684  Bacteria  normal  0.451347  normal 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  26.73 
 
 
236 aa  89.4  4e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_010644  Emin_1197  two component LuxR family transcriptional regulator  29.15 
 
 
225 aa  89  4e-17  Elusimicrobium minutum Pei191  Bacteria  normal  normal  0.0485473 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  27.27 
 
 
219 aa  89  4e-17  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1888  two component transcriptional regulator, LuxR family  27.37 
 
 
212 aa  89  5e-17  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.265772 
 
 
-
 
NC_014165  Tbis_0649  LuxR family two component transcriptional regulator  26.34 
 
 
212 aa  89  5e-17  Thermobispora bispora DSM 43833  Bacteria  normal  0.93281  normal  0.368826 
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  31.03 
 
 
237 aa  87.4  1e-16  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  27.36 
 
 
241 aa  87  1e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  28.85 
 
 
228 aa  87.4  1e-16  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  30.95 
 
 
218 aa  87.4  1e-16  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0641  two component transcriptional regulator, LuxR family  27.23 
 
 
1648 aa  87  2e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014212  Mesil_2848  two component transcriptional regulator, LuxR family  27.55 
 
 
212 aa  86.7  2e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  0.857037  normal  0.944506 
 
 
-
 
NC_013947  Snas_5788  two component transcriptional regulator, LuxR family  25.37 
 
 
214 aa  85.9  4e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.785726 
 
 
-
 
NC_007333  Tfu_2582  LuxR response regulator receiver  25.87 
 
 
233 aa  85.9  4e-16  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  27.23 
 
 
231 aa  85.5  5e-16  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5233  two component transcriptional regulator, LuxR family  25.87 
 
 
223 aa  85.5  5e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.114456  hitchhiker  0.000738291 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  27.32 
 
 
219 aa  85.5  5e-16  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  24.75 
 
 
226 aa  85.1  6e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  28.28 
 
 
209 aa  85.1  6e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal 
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  30.54 
 
 
237 aa  85.1  6e-16  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_013235  Namu_2014  two component transcriptional regulator, LuxR family  25.52 
 
 
212 aa  85.1  6e-16  Nakamurella multipartita DSM 44233  Bacteria  normal  0.172206  hitchhiker  0.00394331 
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  26.37 
 
 
221 aa  85.1  7e-16  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0179337 
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  27.32 
 
 
217 aa  85.1  7e-16  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  29.56 
 
 
303 aa  84.7  8e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  28.43 
 
 
216 aa  84.7  9e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  28.29 
 
 
221 aa  84.3  0.000000000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.133182 
 
 
-
 
NC_010718  Nther_0692  two component transcriptional regulator, LuxR family  26.19 
 
 
213 aa  84.3  0.000000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5375  two component transcriptional regulator, LuxR family  28.93 
 
 
218 aa  84  0.000000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2449  two component LuxR family transcriptional regulator  24.12 
 
 
211 aa  84.7  0.000000000000001  Frankia sp. EAN1pec  Bacteria  normal  normal  0.265588 
 
 
-
 
NC_013739  Cwoe_1651  two component transcriptional regulator, LuxR family  25.24 
 
 
227 aa  84  0.000000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.705317  normal  0.304873 
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  27.45 
 
 
218 aa  84  0.000000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_007204  Psyc_0602  nitrate/nitrite response regulator  28.14 
 
 
219 aa  84  0.000000000000002  Psychrobacter arcticus 273-4  Bacteria  normal  0.790372  normal 
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  26.6 
 
 
213 aa  83.6  0.000000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  27.32 
 
 
207 aa  83.2  0.000000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0042  nitrate/nitrite response regulator protein  29.02 
 
 
209 aa  83.6  0.000000000000002  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  27.18 
 
 
219 aa  84  0.000000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_013235  Namu_4606  two component transcriptional regulator, LuxR family  29.02 
 
 
207 aa  83.6  0.000000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.296562 
 
 
-
 
NC_009439  Pmen_4183  two component LuxR family transcriptional regulator  28 
 
 
220 aa  83.2  0.000000000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013552  DhcVS_374  DNA-binding response regulator, LuxR family  27.23 
 
 
232 aa  82.8  0.000000000000003  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.0000120759  n/a   
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  27.18 
 
 
219 aa  82.8  0.000000000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1229  response regulator receiver protein  24.88 
 
 
212 aa  82.8  0.000000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.643884  hitchhiker  0.00799583 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  27.86 
 
 
253 aa  82.8  0.000000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  26.87 
 
 
234 aa  82.4  0.000000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_010718  Nther_2079  two component transcriptional regulator, LuxR family  27.89 
 
 
212 aa  82.4  0.000000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1152  two component LuxR family transcriptional regulator  25.6 
 
 
225 aa  82.4  0.000000000000004  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3676  two component transcriptional regulator, LuxR family  25.37 
 
 
214 aa  82.4  0.000000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0625047  normal  0.0780809 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  25.25 
 
 
226 aa  82.4  0.000000000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  26.6 
 
 
246 aa  82.4  0.000000000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_009921  Franean1_4062  two component LuxR family transcriptional regulator  25.64 
 
 
216 aa  82.4  0.000000000000005  Frankia sp. EAN1pec  Bacteria  normal  0.0448793  normal  0.300284 
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  28.85 
 
 
220 aa  82  0.000000000000005  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  26.8 
 
 
228 aa  82  0.000000000000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal 
 
 
-
 
NC_009921  Franean1_6933  two component LuxR family transcriptional regulator  25.64 
 
 
244 aa  82.4  0.000000000000005  Frankia sp. EAN1pec  Bacteria  normal  normal  0.322421 
 
 
-
 
NC_008322  Shewmr7_1222  two component LuxR family transcriptional regulator  25.6 
 
 
225 aa  82  0.000000000000005  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  25.98 
 
 
226 aa  82.4  0.000000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014158  Tpau_3507  two component transcriptional regulator, LuxR family  27.54 
 
 
213 aa  82  0.000000000000006  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.892641  n/a   
 
 
-
 
NC_009620  Smed_4344  two component LuxR family transcriptional regulator  26.87 
 
 
219 aa  82  0.000000000000006  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.218307 
 
 
-
 
NC_008781  Pnap_3764  two component LuxR family transcriptional regulator  24.88 
 
 
232 aa  81.6  0.000000000000007  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  25.96 
 
 
222 aa  81.3  0.000000000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_014148  Plim_0373  response regulator receiver  24.75 
 
 
220 aa  81.3  0.000000000000009  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0432  LuxR family DNA-binding response regulator  26.24 
 
 
232 aa  80.9  0.00000000000001  Dehalococcoides ethenogenes 195  Bacteria  hitchhiker  0.00543066  n/a   
 
 
-
 
NC_013093  Amir_6525  two component transcriptional regulator, LuxR family  26.07 
 
 
216 aa  80.9  0.00000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  24.87 
 
 
217 aa  80.5  0.00000000000001  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  28.57 
 
 
221 aa  80.9  0.00000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  26.53 
 
 
209 aa  80.9  0.00000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3254  two component LuxR family transcriptional regulator  28.72 
 
 
201 aa  80.9  0.00000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.49762 
 
 
-
 
NC_007777  Francci3_3253  two component LuxR family transcriptional regulator  24.88 
 
 
213 aa  80.9  0.00000000000001  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  26.96 
 
 
215 aa  80.9  0.00000000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  26.6 
 
 
213 aa  80.5  0.00000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0710  two component LuxR family transcriptional regulator  27.88 
 
 
240 aa  80.9  0.00000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0409  two component LuxR family transcriptional regulator  26.73 
 
 
232 aa  81.3  0.00000000000001  Dehalococcoides sp. BAV1  Bacteria  normal  0.135269  n/a   
 
 
-
 
NC_009456  VC0395_0613  nitrate/nitrite response regulator NarP  27.32 
 
 
208 aa  80.9  0.00000000000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  27.32 
 
 
215 aa  80.9  0.00000000000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4428  two component LuxR family transcriptional regulator  26.19 
 
 
231 aa  80.1  0.00000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2548  two component transcriptional regulator, LuxR family  27 
 
 
218 aa  80.1  0.00000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0020  two component transcriptional regulator, LuxR family  27.67 
 
 
229 aa  80.5  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_1446  two component transcriptional regulator, LuxR family  24.12 
 
 
223 aa  79.7  0.00000000000002  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  28.14 
 
 
214 aa  80.5  0.00000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  26.24 
 
 
230 aa  80.5  0.00000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1495  two component transcriptional regulator, LuxR family  26.6 
 
 
207 aa  79.3  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.194449  normal  0.395611 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  26.21 
 
 
236 aa  79.7  0.00000000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  28.93 
 
 
222 aa  79.7  0.00000000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1151  two component LuxR family transcriptional regulator  25.12 
 
 
225 aa  79.7  0.00000000000003  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  27.18 
 
 
213 aa  79.3  0.00000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.624898 
 
 
-
 
NC_009921  Franean1_4979  two component LuxR family transcriptional regulator  26.15 
 
 
231 aa  79.3  0.00000000000004  Frankia sp. EAN1pec  Bacteria  normal  0.889239  normal  0.507767 
 
 
-
 
NC_011988  Avi_5384  two component response regulator  29.56 
 
 
216 aa  79.3  0.00000000000004  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_38420  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  28.36 
 
 
226 aa  79.3  0.00000000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_2943  two component LuxR family transcriptional regulator  26.32 
 
 
215 aa  79.3  0.00000000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4040  two component LuxR family transcriptional regulator  27.46 
 
 
216 aa  79  0.00000000000004  Pseudomonas mendocina ymp  Bacteria  normal  0.56786  normal 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  26.63 
 
 
227 aa  79.3  0.00000000000004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  26.9 
 
 
213 aa  79  0.00000000000005  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  27.92 
 
 
212 aa  78.6  0.00000000000006  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4366  two component transcriptional regulator, LuxR family  25.69 
 
 
225 aa  78.6  0.00000000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3065  two component LuxR family transcriptional regulator  26.94 
 
 
217 aa  78.6  0.00000000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
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