More than 300 homologs were found in PanDaTox collection
for query gene Cphy_0293 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010001  Cphy_0293  two component AraC family transcriptional regulator  100 
 
 		 532 aa  1098    Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0525  two component AraC family transcriptional regulator  24.32 
 
 		 522 aa  137  6.0000000000000005e-31  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  23.05 
 
 		 513 aa  119  9.999999999999999e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_1228  two component transcriptional regulator, AraC family  43.48 
 
 		 532 aa  108  4e-22  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_0149  two component transcriptional regulator, AraC family  38.89 
 
 		 525 aa  99.8  1e-19  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_0147  two component transcriptional regulator, AraC family  30.95 
 
 		 525 aa  99.8  1e-19  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_0600  two component transcriptional regulator, AraC family  39.34 
 
 		 546 aa  98.6  3e-19  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_3164  two component AraC family transcriptional regulator  40.16 
 
 		 544 aa  98.2  3e-19  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0633186  n/a   
 
 
-
 
NC_010001  Cphy_3861  two component AraC family transcriptional regulator  40 
 
 		 259 aa  97.4  6e-19  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_2141  two component AraC family transcriptional regulator  45.87 
 
 		 260 aa  97.4  6e-19  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_2113  two component transcriptional regulator, AraC family  39.05 
 
 		 538 aa  95.9  1e-18  Clostridium cellulolyticum H10  Bacteria  normal  0.141697  n/a   
 
 
-
 
NC_011898  Ccel_0198  two component transcriptional regulator, AraC family  36.17 
 
 		 534 aa  94  6e-18  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_4320  transcriptional regulator, AraC family  30.54 
 
 		 427 aa  94  7e-18  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_0399  response regulator receiver protein  38.1 
 
 		 365 aa  93.6  8e-18  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_1982  two component transcriptional regulator, AraC family  31.74 
 
 		 544 aa  92  2e-17  Clostridium cellulolyticum H10  Bacteria  normal  0.184696  n/a   
 
 
-
 
NC_009972  Haur_2123  two component AraC family transcriptional regulator  31.82 
 
 		 414 aa  92  2e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.331776  n/a   
 
 
-
 
NC_007644  Moth_2113  two component AraC family transcriptional regulator  41.44 
 
 		 548 aa  91.7  3e-17  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010320  Teth514_0224  response regulator receiver protein  31.95 
 
 		 537 aa  90.5  6e-17  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_011884  Cyan7425_3249  two component transcriptional regulator, LuxR family  43.81 
 
 		 211 aa  90.5  6e-17  Cyanothece sp. PCC 7425  Bacteria  normal  0.414819  normal  0.558116 
 
 
-
 
NC_010001  Cphy_1583  two component AraC family transcriptional regulator  35.09 
 
 		 533 aa  90.5  6e-17  Clostridium phytofermentans ISDg  Bacteria  normal  0.160886  n/a   
 
 
-
 
NC_010001  Cphy_3211  two component AraC family transcriptional regulator  40 
 
 		 548 aa  90.1  9e-17  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0042226  n/a   
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  36.29 
 
 		 216 aa  90.1  1e-16  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_012034  Athe_0853  two component transcriptional regulator, AraC family  39.32 
 
 		 509 aa  89.4  1e-16  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_012793  GWCH70_3156  two component transcriptional regulator, AraC family  31.74 
 
 		 515 aa  89  2e-16  Geobacillus sp. WCH70  Bacteria  normal  0.949308  n/a   
 
 
-
 
NC_009012  Cthe_1584  two component AraC family transcriptional regulator  37.01 
 
 		 259 aa  89  2e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_2007  two component AraC family transcriptional regulator  38.17 
 
 		 529 aa  88.6  2e-16  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_3249  two component transcriptional regulator, AraC family  30.43 
 
 		 531 aa  87.8  4e-16  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_2344  AraC family DNA-binding response regulator  35.71 
 
 		 507 aa  88.2  4e-16  Clostridium perfringens ATCC 13124  Bacteria  normal  0.627636  n/a   
 
 
-
 
NC_008262  CPR_0539  AraC family DNA-binding response regulator  37.93 
 
 		 529 aa  87.4  5e-16  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_008262  CPR_2056  AraC family DNA-binding response regulator  35.71 
 
 		 507 aa  87  7e-16  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_4591  two component transcriptional regulator, AraC family  37.72 
 
 		 265 aa  86.3  0.000000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_0555  AraC family DNA-binding response regulator  35.65 
 
 		 529 aa  85.5  0.000000000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_1172  AraC family DNA-binding response regulator  39.6 
 
 		 250 aa  85.9  0.000000000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.409048  n/a   
 
 
-
 
NC_011898  Ccel_2452  two component transcriptional regulator, AraC family  35.54 
 
 		 509 aa  85.1  0.000000000000003  Clostridium cellulolyticum H10  Bacteria  normal  0.0693402  n/a   
 
 
-
 
NC_011898  Ccel_0995  two component transcriptional regulator, AraC family  35.71 
 
 		 542 aa  84.7  0.000000000000003  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0496  two component AraC family transcriptional regulator  35.09 
 
 		 543 aa  85.1  0.000000000000003  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_2033  transcriptional regulator, AraC family  32.41 
 
 		 267 aa  84.3  0.000000000000004  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  29.55 
 
 		 220 aa  84.7  0.000000000000004  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_1722  two component AraC family transcriptional regulator  34.82 
 
 		 508 aa  84.3  0.000000000000005  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3887  two component AraC family transcriptional regulator  34.65 
 
 		 252 aa  84.3  0.000000000000005  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3405  two component AraC family transcriptional regulator  36.63 
 
 		 253 aa  84.3  0.000000000000005  Clostridium phytofermentans ISDg  Bacteria  normal  0.100445  n/a   
 
 
-
 
NC_008262  CPR_1003  DNA-binding response regulator  37.62 
 
 		 250 aa  83.6  0.000000000000008  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3282  two component AraC family transcriptional regulator  35.07 
 
 		 535 aa  83.6  0.000000000000008  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  38.1 
 
 		 207 aa  83.6  0.000000000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_013173  Dbac_0976  anti-sigma-factor antagonist  37.5 
 
 		 237 aa  83.6  0.000000000000009  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_013216  Dtox_3754  two component transcriptional regulator, LuxR family  36.04 
 
 		 216 aa  82.8  0.00000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00290124  normal  1 
 
 
-
 
NC_011831  Cagg_2054  two component transcriptional regulator, AraC family  33.06 
 
 		 1201 aa  82  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.695732  normal  1 
 
 
-
 
NC_011899  Hore_19910  response regulator receiver protein  35.96 
 
 		 386 aa  82.4  0.00000000000002  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_4415  AraC family transcriptional regulator  36.28 
 
 		 303 aa  82  0.00000000000002  Opitutus terrae PB90-1  Bacteria  hitchhiker  0.0031509  normal  0.543799 
 
 
-
 
NC_009012  Cthe_1824  two component AraC family transcriptional regulator  43.27 
 
 		 362 aa  82.4  0.00000000000002  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000196685  n/a   
 
 
-
 
NC_013132  Cpin_3596  transcriptional regulator, AraC family  33.03 
 
 		 301 aa  82.4  0.00000000000002  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000000994716  hitchhiker  0.0000611237 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  34.68 
 
 		 223 aa  82  0.00000000000002  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0556432 
 
 
-
 
NC_009664  Krad_2537  two component transcriptional regulator, LuxR family  38.68 
 
 		 242 aa  82.4  0.00000000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  34.68 
 
 		 222 aa  82  0.00000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal  1 
 
 
-
 
NC_010001  Cphy_1394  two component AraC family transcriptional regulator  38.98 
 
 		 523 aa  81.6  0.00000000000003  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0042226  n/a   
 
 
-
 
NC_011898  Ccel_0142  transcriptional regulator, AraC family  22.9 
 
 		 760 aa  81.3  0.00000000000004  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011661  Dtur_0314  two component transcriptional regulator, AraC family  34.19 
 
 		 494 aa  81.3  0.00000000000005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_007908  Rfer_2741  two component, sigma54 specific, Fis family transcriptional regulator  36.11 
 
 		 474 aa  80.9  0.00000000000005  Rhodoferax ferrireducens T118  Bacteria  normal  0.0363909  n/a   
 
 
-
 
NC_007492  Pfl01_2641  AraC family transcriptional regulator  32.69 
 
 		 301 aa  80.9  0.00000000000006  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  37.14 
 
 		 219 aa  80.1  0.00000000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_012034  Athe_2055  two component transcriptional regulator, AraC family  33.33 
 
 		 519 aa  79.7  0.0000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_0102  two component transcriptional regulator, AraC family  33.33 
 
 		 519 aa  79.7  0.0000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3034  two component AraC family transcriptional regulator  35.24 
 
 		 556 aa  79.7  0.0000000000001  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00618221  n/a   
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  38.05 
 
 		 223 aa  80.1  0.0000000000001  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  40 
 
 		 215 aa  78.6  0.0000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_006274  BCZK3023  response regulator  36.75 
 
 		 597 aa  79  0.0000000000002  Bacillus cereus E33L  Bacteria  decreased coverage  0.000011368  n/a   
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  39.02 
 
 		 225 aa  79  0.0000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal  1 
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  34.23 
 
 		 232 aa  79  0.0000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_008554  Sfum_0828  multi-sensor signal transduction histidine kinase  34.13 
 
 		 567 aa  79.3  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011898  Ccel_0125  transcriptional regulator, AraC family  33.33 
 
 		 300 aa  79  0.0000000000002  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_004116  SAG1946  DNA-binding response regulator  36.51 
 
 		 257 aa  78.6  0.0000000000003  Streptococcus agalactiae 2603V/R  Bacteria  normal  1  n/a   
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  38.46 
 
 		 226 aa  78.6  0.0000000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_1563  two component LuxR family transcriptional regulator  37.39 
 
 		 257 aa  78.2  0.0000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.781509  n/a   
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  37.98 
 
 		 221 aa  78.2  0.0000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_010001  Cphy_2253  two component AraC family transcriptional regulator  31.15 
 
 		 532 aa  77.8  0.0000000000004  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  33.6 
 
 		 227 aa  78.2  0.0000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_011899  Hore_15370  helix-turn-helix- domain containing protein AraC type  30.95 
 
 		 415 aa  77.8  0.0000000000004  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_0937  transcriptional regulator, AraC family  40 
 
 		 291 aa  77.8  0.0000000000004  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.440102  n/a   
 
 
-
 
NC_013411  GYMC61_2129  response regulator receiver protein  37.72 
 
 		 118 aa  78.2  0.0000000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_3262  response regulator receiver protein  33.33 
 
 		 257 aa  77.4  0.0000000000005  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_0938  two component LuxR family transcriptional regulator  36.19 
 
 		 242 aa  77.8  0.0000000000005  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013385  Adeg_1040  response regulator receiver protein  28.65 
 
 		 391 aa  77.4  0.0000000000006  Ammonifex degensii KC4  Bacteria  normal  0.369353  n/a   
 
 
-
 
NC_011830  Dhaf_3979  two component transcriptional regulator, AraC family  32.46 
 
 		 348 aa  77.4  0.0000000000006  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  36.75 
 
 		 235 aa  77.4  0.0000000000006  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal  1 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  34.4 
 
 		 217 aa  77  0.0000000000008  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  35.83 
 
 		 226 aa  77  0.0000000000008  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_011898  Ccel_0944  two component transcriptional regulator, AraC family  25.93 
 
 		 539 aa  77  0.0000000000009  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  33.85 
 
 		 228 aa  77  0.0000000000009  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  40.74 
 
 		 219 aa  77  0.0000000000009  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  35.25 
 
 		 241 aa  76.3  0.000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  34.51 
 
 		 216 aa  76.3  0.000000000001  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  30.73 
 
 		 225 aa  76.6  0.000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013037  Dfer_1862  transcriptional regulator, AraC family  31.37 
 
 		 300 aa  76.3  0.000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013421  Pecwa_4087  two component transcriptional regulator, AraC family  36 
 
 		 350 aa  76.6  0.000000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  34.13 
 
 		 225 aa  76.3  0.000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.137578 
 
 
-
 
NC_009767  Rcas_1579  two component LuxR family transcriptional regulator  34.29 
 
 		 242 aa  76.3  0.000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007643  Rru_A0919  two component AraC family transcriptional regulator  36.19 
 
 		 356 aa  75.5  0.000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_1528  response regulator receiver modulated CheB methylesterase  41.51 
 
 		 355 aa  75.9  0.000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  0.308389 
 
 
-
 
NC_009654  Mmwyl1_1089  helix-turn-helix domain-containing protein  35 
 
 		 298 aa  75.5  0.000000000002  Marinomonas sp. MWYL1  Bacteria  normal  0.99301  hitchhiker  0.00294409 
 
 
-
 
NC_010001  Cphy_0385  AraC family transcriptional regulator  27.48 
 
 		 766 aa  75.5  0.000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
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