More than 300 homologs were found in PanDaTox collection
for query gene Ccel_0142 on replicon NC_011898
Organism: Clostridium cellulolyticum H10



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011898  Ccel_0142  transcriptional regulator, AraC family  100 
 
 
760 aa  1514    Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1915  AraC family transcriptional regulator  30.09 
 
 
775 aa  352  2e-95  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.00000415573  n/a   
 
 
-
 
NC_011898  Ccel_0990  transcriptional regulator, AraC family  24.19 
 
 
779 aa  129  2.0000000000000002e-28  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0342  AraC family transcriptional regulator  21.25 
 
 
778 aa  128  3e-28  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1706  AraC family transcriptional regulator  23.96 
 
 
778 aa  117  8.999999999999998e-25  Clostridium phytofermentans ISDg  Bacteria  normal  0.0404668  n/a   
 
 
-
 
NC_011898  Ccel_1982  two component transcriptional regulator, AraC family  25.31 
 
 
544 aa  108  3e-22  Clostridium cellulolyticum H10  Bacteria  normal  0.184696  n/a   
 
 
-
 
NC_011898  Ccel_0995  two component transcriptional regulator, AraC family  22.82 
 
 
542 aa  101  5e-20  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1228  two component transcriptional regulator, AraC family  25.95 
 
 
532 aa  97.8  7e-19  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_3164  two component AraC family transcriptional regulator  24.54 
 
 
544 aa  92.4  3e-17  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0633186  n/a   
 
 
-
 
NC_012034  Athe_2033  transcriptional regulator, AraC family  30.09 
 
 
267 aa  90.1  1e-16  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3156  two component transcriptional regulator, AraC family  25.29 
 
 
515 aa  89.7  2e-16  Geobacillus sp. WCH70  Bacteria  normal  0.949308  n/a   
 
 
-
 
NC_009012  Cthe_2212  AraC family transcriptional regulator  43.62 
 
 
302 aa  87.8  6e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6041  transcriptional regulator, AraC family  40.82 
 
 
303 aa  87.8  7e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.331066 
 
 
-
 
NC_010320  Teth514_0224  response regulator receiver protein  35.64 
 
 
537 aa  85.9  0.000000000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2113  two component transcriptional regulator, AraC family  24.82 
 
 
538 aa  85.5  0.000000000000003  Clostridium cellulolyticum H10  Bacteria  normal  0.141697  n/a   
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  23.55 
 
 
513 aa  84.7  0.000000000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007644  Moth_1205  AraC family transcriptional regulator  33.09 
 
 
440 aa  84.7  0.000000000000006  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.909691  normal 
 
 
-
 
NC_011898  Ccel_0125  transcriptional regulator, AraC family  38.38 
 
 
300 aa  84.3  0.000000000000008  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3249  two component transcriptional regulator, AraC family  20.9 
 
 
531 aa  84.3  0.000000000000008  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0944  two component transcriptional regulator, AraC family  24.15 
 
 
539 aa  84.3  0.000000000000008  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_15370  helix-turn-helix- domain containing protein AraC type  25.58 
 
 
415 aa  84  0.00000000000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0385  AraC family transcriptional regulator  22.9 
 
 
766 aa  83.6  0.00000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1583  two component AraC family transcriptional regulator  25.51 
 
 
533 aa  83.2  0.00000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  0.160886  n/a   
 
 
-
 
NC_012034  Athe_1856  transcriptional regulator, AraC family  21.13 
 
 
793 aa  83.6  0.00000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.1682  n/a   
 
 
-
 
NC_011898  Ccel_1001  transcriptional regulator, AraC family  34.91 
 
 
307 aa  84  0.00000000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2274  AraC family transcriptional regulator  38.78 
 
 
307 aa  81.6  0.00000000000005  Burkholderia xenovorans LB400  Bacteria  normal  0.348217  normal  0.470943 
 
 
-
 
NC_010001  Cphy_0293  two component AraC family transcriptional regulator  22.9 
 
 
532 aa  80.9  0.00000000000007  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_19910  response regulator receiver protein  24.27 
 
 
386 aa  80.9  0.00000000000007  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3861  two component AraC family transcriptional regulator  39.42 
 
 
259 aa  80.9  0.00000000000008  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2221  transcriptional regulator  29.3 
 
 
330 aa  80.5  0.0000000000001  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0399  response regulator receiver protein  25.12 
 
 
365 aa  80.5  0.0000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2917  transcriptional regulator, AraC family  35 
 
 
118 aa  80.1  0.0000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.932782  n/a   
 
 
-
 
NC_012034  Athe_2058  transcriptional regulator, AraC family  41.49 
 
 
286 aa  79.3  0.0000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2344  AraC family DNA-binding response regulator  25.31 
 
 
507 aa  79.7  0.0000000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.627636  n/a   
 
 
-
 
NC_011830  Dhaf_4320  transcriptional regulator, AraC family  28.17 
 
 
427 aa  79.3  0.0000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2054  two component transcriptional regulator, AraC family  24.17 
 
 
1201 aa  79.7  0.0000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.695732  normal 
 
 
-
 
NC_007412  Ava_C0027  AraC family transcriptional regulator  35.71 
 
 
299 aa  79.3  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.618912  normal  0.0626425 
 
 
-
 
NC_014158  Tpau_0975  transcriptional regulator, AraC family  30.77 
 
 
271 aa  79  0.0000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2329  transcriptional regulator, AraC family  34.29 
 
 
773 aa  79  0.0000000000004  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2055  two component transcriptional regulator, AraC family  26.19 
 
 
519 aa  78.6  0.0000000000004  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0810  AraC family transcriptional regulator  35.42 
 
 
306 aa  78.6  0.0000000000004  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1089  helix-turn-helix domain-containing protein  33.68 
 
 
298 aa  77.8  0.0000000000007  Marinomonas sp. MWYL1  Bacteria  normal  0.99301  hitchhiker  0.00294409 
 
 
-
 
NC_008262  CPR_2056  AraC family DNA-binding response regulator  25.31 
 
 
507 aa  77.8  0.0000000000008  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0971  AraC family transcriptional regulator  40.82 
 
 
136 aa  77.4  0.0000000000008  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000205729  n/a   
 
 
-
 
NC_010001  Cphy_3256  AraC family transcriptional regulator  37.96 
 
 
292 aa  77.4  0.0000000000009  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_3119  helix-turn-helix- domain containing protein AraC type  31.41 
 
 
293 aa  77  0.000000000001  Pedobacter heparinus DSM 2366  Bacteria  hitchhiker  0.00676861  normal 
 
 
-
 
NC_007644  Moth_2113  two component AraC family transcriptional regulator  24.91 
 
 
548 aa  76.6  0.000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_6144  transcriptional regulator, AraC family  28.23 
 
 
301 aa  76.6  0.000000000001  Variovorax paradoxus S110  Bacteria  normal  0.185797  n/a   
 
 
-
 
NC_008261  CPF_0555  AraC family DNA-binding response regulator  34.65 
 
 
529 aa  76.6  0.000000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2042  AraC family transcriptional regulator  29 
 
 
301 aa  76.6  0.000000000002  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0539  AraC family DNA-binding response regulator  34.65 
 
 
529 aa  76.3  0.000000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0125  transcriptional regulator  31.13 
 
 
325 aa  76.3  0.000000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_4562  AraC family transcriptional regulator  26.13 
 
 
409 aa  75.9  0.000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00627934  n/a   
 
 
-
 
NC_012034  Athe_0600  two component transcriptional regulator, AraC family  36.63 
 
 
546 aa  75.9  0.000000000003  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4969  transcriptional regulator, AraC family  26.13 
 
 
409 aa  75.9  0.000000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0928  AraC family transcriptional regulator  19.57 
 
 
766 aa  75.9  0.000000000003  Clostridium phytofermentans ISDg  Bacteria  normal  0.197774  n/a   
 
 
-
 
NC_009483  Gura_0276  helix-turn-helix domain-containing protein  31.96 
 
 
291 aa  75.5  0.000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1643  transcriptional regulator, AraC family  30.39 
 
 
351 aa  75.9  0.000000000003  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.671722  normal 
 
 
-
 
NC_009972  Haur_2123  two component AraC family transcriptional regulator  35.58 
 
 
414 aa  75.5  0.000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.331776  n/a   
 
 
-
 
NC_007492  Pfl01_2641  AraC family transcriptional regulator  28.57 
 
 
301 aa  75.1  0.000000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_3807  AraC family two component transcriptional regulator  33.33 
 
 
289 aa  75.5  0.000000000004  'Nostoc azollae' 0708  Bacteria  normal  0.536318  n/a   
 
 
-
 
NC_010001  Cphy_0579  two component AraC family transcriptional regulator  40.59 
 
 
531 aa  75.5  0.000000000004  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2287  transcriptional regulator, AraC family  28.04 
 
 
328 aa  75.1  0.000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.322568  n/a   
 
 
-
 
NC_008254  Meso_0574  AraC family transcriptional regulator  34.02 
 
 
311 aa  75.1  0.000000000005  Chelativorans sp. BNC1  Bacteria  normal  0.0798057  n/a   
 
 
-
 
NC_012560  Avin_16600  transcriptional regulator, AraC family  32.84 
 
 
301 aa  74.7  0.000000000006  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06300  methylphosphotriester-DNA alkyltransferase  32 
 
 
302 aa  74.7  0.000000000006  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_2734  AraC family transcriptional regulator  28.05 
 
 
764 aa  74.7  0.000000000007  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.0000030307  n/a   
 
 
-
 
NC_012880  Dd703_1400  transcriptional regulator, AraC family  31.2 
 
 
329 aa  74.3  0.000000000007  Dickeya dadantii Ech703  Bacteria  normal  0.301522  n/a   
 
 
-
 
NC_007336  Reut_C6068  AraC family transcriptional regulator  24.34 
 
 
287 aa  74.3  0.000000000007  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A3053  transcriptional regulator, AraC family  38 
 
 
296 aa  74.3  0.000000000007  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4467  AraC family transcriptional regulator  28.3 
 
 
301 aa  74.7  0.000000000007  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2607  AraC family transcriptional regulator  32.38 
 
 
303 aa  74.3  0.000000000008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.334421  n/a   
 
 
-
 
NC_009674  Bcer98_3653  helix-turn-helix domain-containing protein  39.8 
 
 
240 aa  74.3  0.000000000008  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2675  transcriptional regulator, AraC family  29.13 
 
 
344 aa  74.3  0.000000000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.307401  n/a   
 
 
-
 
NC_011004  Rpal_1543  transcriptional regulator, AraC family  29.41 
 
 
300 aa  73.9  0.000000000009  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2114  putative sensor with HAMP domain  24.94 
 
 
627 aa  74.3  0.000000000009  Clostridium cellulolyticum H10  Bacteria  normal  0.28006  n/a   
 
 
-
 
NC_011757  Mchl_1481  transcriptional regulator, AraC family  29.91 
 
 
321 aa  74.3  0.000000000009  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3971  putative transcriptional regulator  23 
 
 
272 aa  73.9  0.00000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.347316  n/a   
 
 
-
 
NC_007511  Bcep18194_B0883  AraC family transcriptional regulator  34.62 
 
 
322 aa  73.6  0.00000000001  Burkholderia sp. 383  Bacteria  normal  normal  0.172871 
 
 
-
 
NC_010001  Cphy_3034  two component AraC family transcriptional regulator  24.26 
 
 
556 aa  73.6  0.00000000001  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00618221  n/a   
 
 
-
 
NC_008261  CPF_1111  AraC family transcriptional regulator  31.73 
 
 
506 aa  73.6  0.00000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.0000128485  n/a   
 
 
-
 
NC_012912  Dd1591_2755  transcriptional regulator, AraC family  34.69 
 
 
300 aa  73.6  0.00000000001  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4725  AraC family transcriptional regulator  27.36 
 
 
319 aa  73.9  0.00000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  0.70917  normal  0.0655004 
 
 
-
 
NC_013132  Cpin_1891  transcriptional regulator, AraC family  29.59 
 
 
291 aa  73.6  0.00000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3503  transcription activator, effector binding  32.99 
 
 
294 aa  73.9  0.00000000001  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00111619  n/a   
 
 
-
 
NC_011757  Mchl_4827  transcriptional regulator, AraC family  28.3 
 
 
319 aa  73.9  0.00000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1472  AraC family transcriptional regulator  32.65 
 
 
292 aa  73.2  0.00000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.327977  normal  0.780269 
 
 
-
 
NC_011898  Ccel_1428  transcriptional regulator, AraC family  38.38 
 
 
285 aa  73.2  0.00000000002  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4578  AraC family transcriptional regulator  25 
 
 
409 aa  72.8  0.00000000002  Bacillus cereus E33L  Bacteria  normal  0.0591899  n/a   
 
 
-
 
NC_007802  Jann_1318  AraC family transcriptional regulator  29.7 
 
 
294 aa  73.2  0.00000000002  Jannaschia sp. CCS1  Bacteria  normal  0.761239  normal 
 
 
-
 
NC_010086  Bmul_3782  AraC family transcriptional regulator  35.58 
 
 
319 aa  73.2  0.00000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.0502919 
 
 
-
 
NC_011369  Rleg2_1047  transcriptional regulator, AraC family  32.35 
 
 
273 aa  73.2  0.00000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.859066 
 
 
-
 
NC_010001  Cphy_1722  two component AraC family transcriptional regulator  24.47 
 
 
508 aa  72.8  0.00000000002  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_0841  AraC family transcriptional regulator  28.03 
 
 
392 aa  72.8  0.00000000002  Maricaulis maris MCS10  Bacteria  normal  normal  0.271665 
 
 
-
 
NC_008391  Bamb_4202  AraC family transcriptional regulator  34.62 
 
 
319 aa  72.8  0.00000000002  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2846  AraC family transcriptional regulator  27.55 
 
 
330 aa  72.8  0.00000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0071  AraC family transcriptional regulator  32.65 
 
 
288 aa  72.8  0.00000000002  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1958  response regulator receiver protein  23.08 
 
 
530 aa  72.8  0.00000000002  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000471781  n/a   
 
 
-
 
NC_004578  PSPTO_2708  transcriptional activator MltR  28.57 
 
 
301 aa  72.4  0.00000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.215541  n/a   
 
 
-
 
NC_007492  Pfl01_5041  transcriptional regulator  30.77 
 
 
331 aa  72.4  0.00000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  decreased coverage  0.00544571 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>