| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3034 |
|---|
| Symbol | |
|---|
| ID | 5743360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 3707709 |
|---|
| End bp | 3709379 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641294135 |
|---|
| Product | two component AraC family transcriptional regulator |
|---|
| Protein accession | YP_001560130 |
|---|
| Protein GI | 160881162 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00618221 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAGC TATTGGTGGT GGAAGACGAA AAATCAATTG CATATGGAAT GGCAAATAGT
ATTCCATGGG GGGAATGGGG ATTTGAAATT AGCGGTGTCT GCGGAAATGG ATTGGAGGCC
CTTGATCAAA TAAAAAAGGA CAAGCCTCAT GTGATAATTT CAGACATTCG AATGCCAGAA
ATGGATGGAA TAGAGCTAAT GCAGTATCTA AATCAGCATT ACCCGGAGAT TAAAATCATT
ATTCTAAGTG GCTATAATGA TTTTGAATAT ATGCAGATGT CCATTAAAAG CCAGGTTTCT
GAGTACTTAT TAAAACCTAC TGATCTTGAT GAATTCGAAG TTATGTTTCG TAAAATGAAA
GATAGACTTG ATGAAGAAAA TAGAAAAAAA ATAGAGGAAA TTGAGCTAAA ACAGGCTTAT
GAGGAAGGTA AGAGCCTAAA GCTTAGAAAG AAGTTCAATG ATTTGATAAA GGGCTATGGC
TATAACGAAG AAGAGATGGA GGAAGAATTC TTACAACATG ATGGAAACTG GTTTGGTGTT
ATTCGGATTA GTTTCGATGT CCAGAATTCG GTAGATAAGA ATGCCTTTTA TCAGAAGCAA
ATTAAGATAG AGAACCTTCT AAATGAAAAG GCTTCCAAAG AGCAGCAAAT AGTAGGAAAA
TTTATTTTAA ACTTTGAAGA AAAGATAACC GGAATTCTAA AATCTGAAGA AGAACCAGAA
GAAGAAGTCC TTCGTAGCTA TACCAAGAAG ATGTTAGAAT GCGTCATAGG AGAGGGTAAC
ATCAATGCAT ATGCAGGTAT TAGCAACTTC TATGTGGATT TTCAGATGTT ACCTCAGTGT
TATGAACAAG CGAAATGCTG TGTCGGTCAG AAAATCTATA GTGAAGCCAA AAGCCAGATT
ATGTTCTATA AAGAAATGCA GGAAGCAGAT TTTGACTATT ACGCCATTTC TTTTGACGTG
GAGAAGATTC TTAAGGAAAT TTTAGAACAG CAAGAAAAAG AATTAGAAGA GACACTGGAA
CAGATTTTCT CTGAATTCAG AGGGAAGGTG ATTCTTGATT ATGATTGTAT TAACCGTCTA
AGCCTTGAGT TAATGTTTAA CCTATCCCGT GAGCTGTTAC GCTATGGTGT TCAACTTGAG
AAAGTTATGA AAAAGATGGA TTACACATAT ACACACATAT ATACCTTTAA AAGCTTGGAA
GGGAAAAAAG AGTTTCTATT TAAAATTCTT CGAGAAGTTT CCAAAGAAAG TGCTCGAATG
AAGGGAGAAT GGAAAAACAG AAGCAGCCTT GCTCAGCAAA TAAAGGAAAT TGTGGATGCA
GAATACGATT CTAACCAGAT TTCTCTAGAA TATGTTGGTA CCAAGGTGTG TAAGAATACA
GCATACATTT CTAAAATATT TAAAAATGAA TTTGGATGTA ATTTTAGTGA TTATATTATA
TCAAAACGAT TGGAGAAAAG TCAGAAACTT CTGGCAGATC CGGCACTTAA GATATATGAA
ATAGCTGAGG AAATGGGATG GGCTGATGTA TCCAACTATA TTAAGTTATT TAAGAAAAAG
TATGGAATGA GTCCAAAAGA GTATCGTAAT ATCCTCCAAG CAGGAGGTAT CCTCCAAACA
GGAGGTAACC ACCCAAAAGG AGTTGGCCAT GCTAAAGATT CTGAAAATTA A
|
|---|
| Protein sequence | MYKLLVVEDE KSIAYGMANS IPWGEWGFEI SGVCGNGLEA LDQIKKDKPH VIISDIRMPE
MDGIELMQYL NQHYPEIKII ILSGYNDFEY MQMSIKSQVS EYLLKPTDLD EFEVMFRKMK
DRLDEENRKK IEEIELKQAY EEGKSLKLRK KFNDLIKGYG YNEEEMEEEF LQHDGNWFGV
IRISFDVQNS VDKNAFYQKQ IKIENLLNEK ASKEQQIVGK FILNFEEKIT GILKSEEEPE
EEVLRSYTKK MLECVIGEGN INAYAGISNF YVDFQMLPQC YEQAKCCVGQ KIYSEAKSQI
MFYKEMQEAD FDYYAISFDV EKILKEILEQ QEKELEETLE QIFSEFRGKV ILDYDCINRL
SLELMFNLSR ELLRYGVQLE KVMKKMDYTY THIYTFKSLE GKKEFLFKIL REVSKESARM
KGEWKNRSSL AQQIKEIVDA EYDSNQISLE YVGTKVCKNT AYISKIFKNE FGCNFSDYII
SKRLEKSQKL LADPALKIYE IAEEMGWADV SNYIKLFKKK YGMSPKEYRN ILQAGGILQT
GGNHPKGVGH AKDSEN
|
|---|
| |