More than 300 homologs were found in PanDaTox collection
for query gene CPF_0555 on replicon NC_008261
Organism: Clostridium perfringens ATCC 13124



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008261  CPF_0555  AraC family DNA-binding response regulator  100 
 
 
529 aa  1030    Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0539  AraC family DNA-binding response regulator  94.9 
 
 
529 aa  959    Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0600  two component transcriptional regulator, AraC family  28.62 
 
 
546 aa  154  2.9999999999999998e-36  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0525  two component AraC family transcriptional regulator  26.71 
 
 
522 aa  153  5.9999999999999996e-36  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1228  two component transcriptional regulator, AraC family  26.37 
 
 
532 aa  149  2.0000000000000003e-34  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2113  two component transcriptional regulator, AraC family  27.5 
 
 
538 aa  145  2e-33  Clostridium cellulolyticum H10  Bacteria  normal  0.141697  n/a   
 
 
-
 
NC_012034  Athe_2055  two component transcriptional regulator, AraC family  28.7 
 
 
519 aa  144  3e-33  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0147  two component transcriptional regulator, AraC family  26.76 
 
 
525 aa  140  6e-32  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0314  two component transcriptional regulator, AraC family  28.09 
 
 
494 aa  129  1.0000000000000001e-28  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2253  two component AraC family transcriptional regulator  25.5 
 
 
532 aa  125  2e-27  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3249  two component transcriptional regulator, AraC family  24.28 
 
 
531 aa  123  9e-27  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0944  two component transcriptional regulator, AraC family  22.61 
 
 
539 aa  120  7e-26  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0853  two component transcriptional regulator, AraC family  26.43 
 
 
509 aa  120  7.999999999999999e-26  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1394  two component AraC family transcriptional regulator  25.47 
 
 
523 aa  117  7.999999999999999e-25  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0042226  n/a   
 
 
-
 
NC_010320  Teth514_1958  response regulator receiver protein  25.32 
 
 
530 aa  115  2.0000000000000002e-24  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000471781  n/a   
 
 
-
 
NC_010001  Cphy_2007  two component AraC family transcriptional regulator  23.02 
 
 
529 aa  111  4.0000000000000004e-23  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  21.76 
 
 
513 aa  110  4.0000000000000004e-23  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007644  Moth_2113  two component AraC family transcriptional regulator  21.61 
 
 
548 aa  110  9.000000000000001e-23  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_2452  two component transcriptional regulator, AraC family  43.18 
 
 
509 aa  106  9e-22  Clostridium cellulolyticum H10  Bacteria  normal  0.0693402  n/a   
 
 
-
 
NC_010001  Cphy_1583  two component AraC family transcriptional regulator  23.94 
 
 
533 aa  99.8  1e-19  Clostridium phytofermentans ISDg  Bacteria  normal  0.160886  n/a   
 
 
-
 
NC_011898  Ccel_0149  two component transcriptional regulator, AraC family  22.3 
 
 
525 aa  97.1  7e-19  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1251  two component transcriptional regulator, AraC family  24.83 
 
 
566 aa  94.7  4e-18  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2123  two component AraC family transcriptional regulator  33.97 
 
 
414 aa  92.8  1e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.331776  n/a   
 
 
-
 
NC_002976  SERP2406  AraC family DNA-binding response regulator  32.65 
 
 
251 aa  90.1  8e-17  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  41.9 
 
 
216 aa  88.6  3e-16  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_3164  two component AraC family transcriptional regulator  32.74 
 
 
544 aa  87.8  5e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0633186  n/a   
 
 
-
 
NC_011886  Achl_0125  transcriptional regulator, AraC family  33.66 
 
 
288 aa  87.4  6e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008261  CPF_2344  AraC family DNA-binding response regulator  34.85 
 
 
507 aa  86.7  9e-16  Clostridium perfringens ATCC 13124  Bacteria  normal  0.627636  n/a   
 
 
-
 
NC_008261  CPF_1111  AraC family transcriptional regulator  38.38 
 
 
506 aa  86.3  0.000000000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.0000128485  n/a   
 
 
-
 
NC_008262  CPR_2056  AraC family DNA-binding response regulator  34.85 
 
 
507 aa  86.3  0.000000000000001  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0293  two component AraC family transcriptional regulator  35.65 
 
 
532 aa  85.9  0.000000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0224  response regulator receiver protein  40.82 
 
 
537 aa  85.5  0.000000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0213  response regulator receiver  30.41 
 
 
252 aa  85.1  0.000000000000003  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1982  two component transcriptional regulator, AraC family  30.29 
 
 
544 aa  85.1  0.000000000000003  Clostridium cellulolyticum H10  Bacteria  normal  0.184696  n/a   
 
 
-
 
NC_010001  Cphy_2141  two component AraC family transcriptional regulator  37.41 
 
 
260 aa  85.1  0.000000000000003  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0207  response regulator receiver protein  30.41 
 
 
252 aa  84.7  0.000000000000003  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  40 
 
 
216 aa  85.1  0.000000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  40 
 
 
215 aa  84.7  0.000000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal 
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  39.05 
 
 
215 aa  84.3  0.000000000000005  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  40.95 
 
 
215 aa  84  0.000000000000006  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  40.95 
 
 
215 aa  84  0.000000000000006  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  40.95 
 
 
215 aa  84  0.000000000000006  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1003  DNA-binding response regulator  37.04 
 
 
250 aa  84  0.000000000000007  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_19910  response regulator receiver protein  30.07 
 
 
386 aa  83.6  0.000000000000008  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0995  two component transcriptional regulator, AraC family  31.19 
 
 
542 aa  83.6  0.000000000000008  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0276  helix-turn-helix domain-containing protein  32.69 
 
 
291 aa  83.6  0.000000000000009  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2550  two component transcriptional regulator, AraC family  35.29 
 
 
502 aa  83.6  0.000000000000009  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  31.18 
 
 
215 aa  82.8  0.00000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal 
 
 
-
 
NC_010001  Cphy_3211  two component AraC family transcriptional regulator  33.08 
 
 
548 aa  83.2  0.00000000000001  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0042226  n/a   
 
 
-
 
NC_008261  CPF_1172  AraC family DNA-binding response regulator  33.33 
 
 
250 aa  82.8  0.00000000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.409048  n/a   
 
 
-
 
NC_011898  Ccel_1428  transcriptional regulator, AraC family  37 
 
 
285 aa  83.2  0.00000000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  31.18 
 
 
215 aa  82.8  0.00000000000001  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.329832 
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  38.1 
 
 
215 aa  82  0.00000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.976007 
 
 
-
 
NC_007412  Ava_C0027  AraC family transcriptional regulator  25.58 
 
 
299 aa  82.4  0.00000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.618912  normal  0.0626425 
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  31.18 
 
 
215 aa  82.8  0.00000000000002  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  31.18 
 
 
215 aa  82  0.00000000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  41.9 
 
 
214 aa  81.6  0.00000000000003  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  31.18 
 
 
215 aa  81.6  0.00000000000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1137  two component LuxR family transcriptional regulator  40 
 
 
214 aa  82  0.00000000000003  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5330  two component LuxR family transcriptional regulator  39.05 
 
 
215 aa  81.6  0.00000000000003  Burkholderia ambifaria AMMD  Bacteria  normal  0.858277  normal 
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  31.18 
 
 
215 aa  82  0.00000000000003  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal 
 
 
-
 
NC_010001  Cphy_3034  two component AraC family transcriptional regulator  30.61 
 
 
556 aa  81.3  0.00000000000005  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00618221  n/a   
 
 
-
 
NC_010001  Cphy_0496  two component AraC family transcriptional regulator  25.85 
 
 
543 aa  80.9  0.00000000000005  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  30.59 
 
 
215 aa  81.3  0.00000000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal 
 
 
-
 
NC_007511  Bcep18194_B2520  two component LuxR family transcriptional regulator  40 
 
 
214 aa  80.9  0.00000000000005  Burkholderia sp. 383  Bacteria  normal  0.943169  normal  0.310419 
 
 
-
 
NC_010001  Cphy_3282  two component AraC family transcriptional regulator  32.87 
 
 
535 aa  80.9  0.00000000000005  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3925  two component LuxR family transcriptional regulator  40 
 
 
215 aa  80.5  0.00000000000007  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_3595  two component LuxR family transcriptional regulator  40 
 
 
215 aa  80.1  0.00000000000009  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_009079  BMA10247_A1725  LuxR family DNA-binding response regulator  38.1 
 
 
215 aa  79.3  0.0000000000001  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0703  LuxR family DNA-binding response regulator  38.1 
 
 
215 aa  79.3  0.0000000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  0.533722  n/a   
 
 
-
 
NC_008835  BMA10229_0760  LuxR family DNA-binding response regulator  38.1 
 
 
215 aa  79.3  0.0000000000001  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1228  LuxR family DNA-binding response regulator  29.71 
 
 
215 aa  79.3  0.0000000000001  Burkholderia pseudomallei 668  Bacteria  normal  0.0904383  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1154  LuxR family DNA-binding response regulator  38.1 
 
 
215 aa  79.3  0.0000000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  0.324728  n/a   
 
 
-
 
NC_010001  Cphy_3887  two component AraC family transcriptional regulator  31.78 
 
 
252 aa  79.3  0.0000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1216  two component LuxR family transcriptional regulator  37.14 
 
 
215 aa  78.6  0.0000000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0399  response regulator receiver protein  29.92 
 
 
365 aa  79.3  0.0000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  35.25 
 
 
222 aa  78.6  0.0000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010087  Bmul_5903  two component LuxR family transcriptional regulator  37.14 
 
 
215 aa  79.3  0.0000000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.68975  normal  0.398777 
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  37.14 
 
 
215 aa  78.6  0.0000000000002  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_007952  Bxe_B0583  AraC family transcriptional regulator  28.97 
 
 
312 aa  79  0.0000000000002  Burkholderia xenovorans LB400  Bacteria  normal  0.98908  normal  0.54842 
 
 
-
 
NC_012034  Athe_0102  two component transcriptional regulator, AraC family  35.71 
 
 
519 aa  79.3  0.0000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5813  two component LuxR family transcriptional regulator  39.05 
 
 
215 aa  79.3  0.0000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_013037  Dfer_2104  transcriptional regulator, AraC family  27.95 
 
 
298 aa  79  0.0000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.244646 
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  35.58 
 
 
219 aa  78.6  0.0000000000003  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0121621 
 
 
-
 
NC_007347  Reut_A1146  response regulator receiver  37.14 
 
 
209 aa  78.6  0.0000000000003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2427  LuxR family DNA-binding response regulator  38.1 
 
 
282 aa  78.2  0.0000000000003  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_15370  helix-turn-helix- domain containing protein AraC type  35.46 
 
 
415 aa  78.6  0.0000000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1089  helix-turn-helix domain-containing protein  27.78 
 
 
298 aa  78.6  0.0000000000003  Marinomonas sp. MWYL1  Bacteria  normal  0.99301  hitchhiker  0.00294409 
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  30.47 
 
 
232 aa  78.2  0.0000000000004  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  31.45 
 
 
232 aa  78.2  0.0000000000004  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  38.1 
 
 
219 aa  77.4  0.0000000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0198  two component transcriptional regulator, AraC family  35.58 
 
 
534 aa  77.8  0.0000000000005  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1809  transcriptional regulator, AraC family  34.62 
 
 
273 aa  77.4  0.0000000000005  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000000729156  n/a   
 
 
-
 
NC_007778  RPB_0180  AraC family transcriptional regulator  25 
 
 
223 aa  77.4  0.0000000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  29.69 
 
 
232 aa  77  0.0000000000007  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_010001  Cphy_3256  AraC family transcriptional regulator  35 
 
 
292 aa  77.4  0.0000000000007  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0937  transcriptional regulator, AraC family  35.83 
 
 
291 aa  77  0.0000000000007  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.440102  n/a   
 
 
-
 
NC_011898  Ccel_0142  transcriptional regulator, AraC family  34.65 
 
 
760 aa  77  0.0000000000008  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2329  transcriptional regulator, AraC family  36.51 
 
 
773 aa  76.6  0.0000000000009  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3653  helix-turn-helix domain-containing protein  33.91 
 
 
240 aa  76.3  0.000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
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