More than 300 homologs were found in PanDaTox collection
for query gene Cphy_3211 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_3211  two component AraC family transcriptional regulator  100 
 
 
548 aa  1117    Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0042226  n/a   
 
 
-
 
NC_011898  Ccel_0147  two component transcriptional regulator, AraC family  27.12 
 
 
525 aa  201  3e-50  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0853  two component transcriptional regulator, AraC family  28.88 
 
 
509 aa  192  1e-47  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2344  AraC family DNA-binding response regulator  30.04 
 
 
507 aa  171  3e-41  Clostridium perfringens ATCC 13124  Bacteria  normal  0.627636  n/a   
 
 
-
 
NC_008262  CPR_2056  AraC family DNA-binding response regulator  29.85 
 
 
507 aa  171  3e-41  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1982  two component transcriptional regulator, AraC family  25.95 
 
 
544 aa  155  2e-36  Clostridium cellulolyticum H10  Bacteria  normal  0.184696  n/a   
 
 
-
 
NC_012034  Athe_2055  two component transcriptional regulator, AraC family  25.42 
 
 
519 aa  143  9.999999999999999e-33  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0995  two component transcriptional regulator, AraC family  25.68 
 
 
542 aa  138  2e-31  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0496  two component AraC family transcriptional regulator  24.56 
 
 
543 aa  129  2.0000000000000002e-28  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0944  two component transcriptional regulator, AraC family  24.51 
 
 
539 aa  128  3e-28  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2550  two component transcriptional regulator, AraC family  25.69 
 
 
502 aa  125  2e-27  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0579  two component AraC family transcriptional regulator  25.14 
 
 
531 aa  124  4e-27  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1645  two component transcriptional regulator, AraC family  23.94 
 
 
526 aa  123  8e-27  Clostridium cellulolyticum H10  Bacteria  normal  0.168722  n/a   
 
 
-
 
NC_007644  Moth_2113  two component AraC family transcriptional regulator  24.68 
 
 
548 aa  123  9.999999999999999e-27  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1251  two component transcriptional regulator, AraC family  23.95 
 
 
566 aa  120  3.9999999999999996e-26  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2452  two component transcriptional regulator, AraC family  39.61 
 
 
509 aa  120  6e-26  Clostridium cellulolyticum H10  Bacteria  normal  0.0693402  n/a   
 
 
-
 
NC_010001  Cphy_2141  two component AraC family transcriptional regulator  38.29 
 
 
260 aa  118  3e-25  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0149  two component transcriptional regulator, AraC family  43.65 
 
 
525 aa  113  7.000000000000001e-24  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_3164  two component AraC family transcriptional regulator  24.16 
 
 
544 aa  113  9e-24  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0633186  n/a   
 
 
-
 
NC_009012  Cthe_1584  two component AraC family transcriptional regulator  32.61 
 
 
259 aa  109  2e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3034  two component AraC family transcriptional regulator  41.43 
 
 
556 aa  106  1e-21  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00618221  n/a   
 
 
-
 
NC_010001  Cphy_3887  two component AraC family transcriptional regulator  40.17 
 
 
252 aa  104  5e-21  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2007  two component AraC family transcriptional regulator  39.71 
 
 
529 aa  103  6e-21  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0399  response regulator receiver protein  39.85 
 
 
365 aa  103  9e-21  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0314  two component transcriptional regulator, AraC family  42.66 
 
 
494 aa  103  1e-20  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2123  two component AraC family transcriptional regulator  24.57 
 
 
414 aa  102  2e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.331776  n/a   
 
 
-
 
NC_009632  SaurJH1_0213  response regulator receiver  33.68 
 
 
252 aa  101  4e-20  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2718  two component transcriptional regulator, AraC family  39.86 
 
 
259 aa  101  4e-20  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009487  SaurJH9_0207  response regulator receiver protein  33.68 
 
 
252 aa  101  4e-20  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1722  two component AraC family transcriptional regulator  40.31 
 
 
508 aa  99  2e-19  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_19910  response regulator receiver protein  39.02 
 
 
386 aa  99  2e-19  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0198  two component transcriptional regulator, AraC family  38.17 
 
 
534 aa  99  2e-19  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1228  two component transcriptional regulator, AraC family  40.83 
 
 
532 aa  97.1  8e-19  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3249  two component transcriptional regulator, AraC family  39.5 
 
 
531 aa  96.3  1e-18  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0618  two component AraC family transcriptional regulator  35.77 
 
 
258 aa  96.3  1e-18  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.00000605397  n/a   
 
 
-
 
NC_010001  Cphy_2253  two component AraC family transcriptional regulator  37.4 
 
 
532 aa  95.9  2e-18  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0771  two component AraC family transcriptional regulator  40.54 
 
 
355 aa  95.1  3e-18  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000862622  n/a   
 
 
-
 
NC_010001  Cphy_3861  two component AraC family transcriptional regulator  37.61 
 
 
259 aa  93.2  1e-17  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3156  two component transcriptional regulator, AraC family  36.97 
 
 
515 aa  92.4  2e-17  Geobacillus sp. WCH70  Bacteria  normal  0.949308  n/a   
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  34.53 
 
 
513 aa  91.3  4e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013501  Rmar_2186  two component transcriptional regulator, LytTR family  38.69 
 
 
275 aa  91.3  4e-17  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4591  two component transcriptional regulator, AraC family  35.43 
 
 
265 aa  90.9  6e-17  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0293  two component AraC family transcriptional regulator  40 
 
 
532 aa  90.1  9e-17  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2406  AraC family DNA-binding response regulator  39.02 
 
 
251 aa  89.7  1e-16  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG1946  DNA-binding response regulator  31.85 
 
 
257 aa  89  2e-16  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3679  LytR/AlgR family transcriptional regulator  40.32 
 
 
262 aa  89.4  2e-16  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2467  two component transcriptional regulator, AraC family  29.71 
 
 
251 aa  89  2e-16  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_3405  two component AraC family transcriptional regulator  36.89 
 
 
253 aa  89  2e-16  Clostridium phytofermentans ISDg  Bacteria  normal  0.100445  n/a   
 
 
-
 
NC_010001  Cphy_1394  two component AraC family transcriptional regulator  35.71 
 
 
523 aa  88.2  4e-16  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0042226  n/a   
 
 
-
 
NC_010001  Cphy_0525  two component AraC family transcriptional regulator  38.64 
 
 
522 aa  87.8  4e-16  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  31.54 
 
 
209 aa  87.4  6e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal 
 
 
-
 
NC_008025  Dgeo_0315  two component LuxR family transcriptional regulator  39.67 
 
 
214 aa  87  9e-16  Deinococcus geothermalis DSM 11300  Bacteria  normal  hitchhiker  0.0084678 
 
 
-
 
NC_007404  Tbd_0231  LytR/AlgR family transcriptional regulator  30.04 
 
 
254 aa  86.3  0.000000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.740894 
 
 
-
 
NC_012034  Athe_2373  two component transcriptional regulator, AraC family  34.78 
 
 
252 aa  86.7  0.000000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  31.18 
 
 
204 aa  86.3  0.000000000000001  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_1111  AraC family transcriptional regulator  37.1 
 
 
506 aa  86.7  0.000000000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.0000128485  n/a   
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  33.57 
 
 
206 aa  85.9  0.000000000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_010338  Caul_0621  two component LuxR family transcriptional regulator  30.24 
 
 
212 aa  85.9  0.000000000000002  Caulobacter sp. K31  Bacteria  normal  normal  0.881689 
 
 
-
 
NC_013947  Snas_5788  two component transcriptional regulator, LuxR family  34.85 
 
 
214 aa  85.5  0.000000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.785726 
 
 
-
 
NC_009012  Cthe_1824  two component AraC family transcriptional regulator  43.43 
 
 
362 aa  85.9  0.000000000000002  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000196685  n/a   
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  35.83 
 
 
206 aa  85.1  0.000000000000003  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  27.13 
 
 
207 aa  85.5  0.000000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  37.61 
 
 
215 aa  84.7  0.000000000000004  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0677  response regulator receiver modulated metal dependent phosphohydrolase  33.12 
 
 
343 aa  84.3  0.000000000000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.756866  n/a   
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  36.75 
 
 
215 aa  84  0.000000000000006  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  36.75 
 
 
215 aa  84  0.000000000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  36.75 
 
 
215 aa  84  0.000000000000006  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  36.75 
 
 
215 aa  84  0.000000000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  36.75 
 
 
215 aa  84  0.000000000000006  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  36.89 
 
 
465 aa  84  0.000000000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  36.75 
 
 
215 aa  83.6  0.000000000000008  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0097  LytR/AlgR family transcriptional regulator  36.64 
 
 
245 aa  83.6  0.000000000000008  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  36.75 
 
 
215 aa  83.6  0.000000000000008  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  34.17 
 
 
224 aa  83.2  0.00000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.17 
 
 
230 aa  82.8  0.00000000000001  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  36.75 
 
 
215 aa  83.6  0.00000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3676  two component transcriptional regulator, LuxR family  29.31 
 
 
214 aa  82.4  0.00000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0625047  normal  0.0780809 
 
 
-
 
NC_008340  Mlg_2671  response regulator receiver protein  34.71 
 
 
243 aa  82  0.00000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  hitchhiker  0.000000000586434 
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  35.9 
 
 
215 aa  82.4  0.00000000000002  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0555  AraC family DNA-binding response regulator  35.65 
 
 
529 aa  81.6  0.00000000000003  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  30.83 
 
 
220 aa  82  0.00000000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2668  two component LuxR family transcriptional regulator  35.71 
 
 
213 aa  82  0.00000000000003  Pseudomonas mendocina ymp  Bacteria  normal  0.18046  normal 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  27.98 
 
 
209 aa  81.6  0.00000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0845  response regulator receiver modulated metal dependent phosphohydrolase  34.85 
 
 
508 aa  82  0.00000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.903712  hitchhiker  0.00198769 
 
 
-
 
NC_013037  Dfer_4386  two component transcriptional regulator, LytTR family  36.97 
 
 
260 aa  81.3  0.00000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3668  two-component response regulator AlgR  35.48 
 
 
243 aa  81.6  0.00000000000004  Saccharophagus degradans 2-40  Bacteria  decreased coverage  0.00827536  normal  0.334671 
 
 
-
 
NC_008262  CPR_1003  DNA-binding response regulator  34.9 
 
 
250 aa  81.3  0.00000000000004  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0919  two component LuxR family transcriptional regulator  38.6 
 
 
214 aa  81.6  0.00000000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  31.15 
 
 
223 aa  81.6  0.00000000000004  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_013385  Adeg_1040  response regulator receiver protein  32.26 
 
 
391 aa  80.9  0.00000000000005  Ammonifex degensii KC4  Bacteria  normal  0.369353  n/a   
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  31.58 
 
 
234 aa  80.9  0.00000000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_009675  Anae109_3416  putative two-component response-regulatory protein YehT  33.06 
 
 
237 aa  80.9  0.00000000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.329348  normal  0.0577965 
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  31.4 
 
 
214 aa  81.3  0.00000000000005  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  30.32 
 
 
225 aa  80.9  0.00000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_010571  Oter_3913  LytTR family two component transcriptional regulator  34.03 
 
 
268 aa  80.9  0.00000000000006  Opitutus terrae PB90-1  Bacteria  normal  0.316099  normal 
 
 
-
 
NC_003909  BCE_1102  LuxR family DNA-binding response regulator  37.72 
 
 
214 aa  80.5  0.00000000000008  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  28.36 
 
 
217 aa  80.5  0.00000000000008  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2723  putative two-component response-regulatory protein YehT  36.59 
 
 
239 aa  80.5  0.00000000000008  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  36.75 
 
 
206 aa  80.1  0.00000000000009  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0036  LytR/AlgR family transcriptional regulator  30.05 
 
 
248 aa  80.1  0.00000000000009  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
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