| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1722 |
|---|
| Symbol | |
|---|
| ID | 5741473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 2120709 |
|---|
| End bp | 2122235 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 641292822 |
|---|
| Product | two component AraC family transcriptional regulator |
|---|
| Protein accession | YP_001558833 |
|---|
| Protein GI | 160879865 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAAG TATTAATTGC AGAAGATGAA GATATTATTC TTGCAGGTAT TAATAAAATT
ATTGATTGGG ATGAACTTGG GCTTGAGGTG GTATGGTTAG CACATAATGG ACAAGAAGCT
CTTTCTATGT TGGAAAAGGA AGCAGTTGAC ATTATTATTA CCGATATCAA CATGCCGGTG
ATGAGTGGTT TAGAATTTCT TTCTCAAATA AGAAGTGAAA ATAAGCGAAC TCGATTTATT
ATATTAAGTG GTTATGACGA TTTTACATAT GCACAGAAAG CAATTCCTCT TAGTGTAGAA
AATTACATAT TGAAACCAAT TAACGAGGAA AAGCTGCATG ATGTGCTAAA TCAAACAGTA
CATAAATTGA TTACGATTGA TAATGAAAGC AAATATACGA TTGCTTCTCA GCAGAAGTTA
TTAAAGTTTC TATCAGGGCA AATGAAAGAG GGTAAAGATA CCTTTATCAA GGAAACAGGT
CTCCGGATAG ATAAACCTTT TGCCATTGTA GCTAATGTAA AATTGAAGCC AAGAGATAGA
AACGGGAAGG AATTAGATGG AATTACTAGT TTTATCGGTA AAAAATTCAT AGAATTAGAT
TTGCAGACTT TAATTTACGA CAAGGATGAA TTTCTTATTA TCTTTCAAAG TAATCAGATG
GATTATAATT ACGCAAGAGA CAGAATGGAA GAAGTGCAGT CTCAGATAGA GGCATTTTAT
GAGATCACAA CCTTTATTAC AATCAGTTCT ATATTTCATG ATTTAGATGG TATTTGCGGG
GCTTTTCAAG AAACGAAAAA ACTACAAAAG TACCTTATCA TAGCTGGTTA CGGCAATAGT
ATTGATAAGA GATATTGTAG TGGAAGAAAA TCAACAGAGA TTAGTCTGGA TGAGAGCTTA
ATCGATAAGT TAATTTTAGC AAAAGATAGA ACTGGAATCA GTAAATATAT TGATGATTTA
TTTAGGAATC ATATTGAAAA AGAAAAGATA ACAAGTGATG CAGTATATCA TTTAGCAATT
AAACTGGCAT TATCACTTCA ACGTGTGGTC CGCGAATTCA AACTATCTTA TGATAATAAC
ATTAAGAATT TGGTAGAAGT AATTGAAGAG CTTTTCAAAG CGGACGACCT TTCTGATATC
AAATCTATCT TTTTAATTGA AATCATGGAG ATTATAGATT GCATCAATAT AGGAGATTCG
CAGTATACAC CTGTAGTTAG ACAAATCTTA AGCGATCTAG AAGAGTGTTA TAAAGAAGAT
ATTAATTTGA AAGTTCTAGC GCAAAAGTAT TGTATGAATA CTTCATATTT AGGTCAAATA
TTTCAGAAGG AGGTAGGGGT GCCTTTCTCT CAATATTTAA CGAATATGAA GAATTCGAAA
GCAAAAGATT TAATATTAAA TACCAATCTA AAAATTAATG ACATTGCTAA GGAAGTTGGT
TATCCGGACG TAAGTTACTT CTATAGAAAA TTCAAACAGT GCTACGGCAC ATCACCAGCT
TCATTAAGAG AACTTAAACA ATATTAG
|
|---|
| Protein sequence | MYKVLIAEDE DIILAGINKI IDWDELGLEV VWLAHNGQEA LSMLEKEAVD IIITDINMPV
MSGLEFLSQI RSENKRTRFI ILSGYDDFTY AQKAIPLSVE NYILKPINEE KLHDVLNQTV
HKLITIDNES KYTIASQQKL LKFLSGQMKE GKDTFIKETG LRIDKPFAIV ANVKLKPRDR
NGKELDGITS FIGKKFIELD LQTLIYDKDE FLIIFQSNQM DYNYARDRME EVQSQIEAFY
EITTFITISS IFHDLDGICG AFQETKKLQK YLIIAGYGNS IDKRYCSGRK STEISLDESL
IDKLILAKDR TGISKYIDDL FRNHIEKEKI TSDAVYHLAI KLALSLQRVV REFKLSYDNN
IKNLVEVIEE LFKADDLSDI KSIFLIEIME IIDCINIGDS QYTPVVRQIL SDLEECYKED
INLKVLAQKY CMNTSYLGQI FQKEVGVPFS QYLTNMKNSK AKDLILNTNL KINDIAKEVG
YPDVSYFYRK FKQCYGTSPA SLRELKQY
|
|---|
| |