Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_3211 |
Symbol | |
ID | 5741989 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | - |
Start bp | 3915499 |
End bp | 3917145 |
Gene Length | 1647 bp |
Protein Length | 548 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 641294311 |
Product | two component AraC family transcriptional regulator |
Protein accession | YP_001560304 |
Protein GI | 160881336 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0042226 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACGTT ACGAATATTG TACTGTCGTC CAAATTCACG GGATTGCGGC AGAATGGAGG ATTAACATGT TAAGAGTCTT AGTAGTGGAT GATGAGCCAT ATATCAAACA AGGGTTAGCA ATGCTTATCA ATTGGATGGC AGAAGGGTTT ACAATCATTG GTGAAGCAGC GAACGGAAAA GAAGCGATAC GATTTTTACA GAAAACGAAA GTAGATCTTA TCATTGCAGA TATTAAAATG CCTGAGATGA ATGGTATCGA GCTATTAGAG TACATAAAAA AAGAAAAATT ATCCGATGCA TCCTATATTA TTCTTAGTGG ATATTATGAC TTTCAATATG CTAGGTCTGC AATCCAACAC AACTGTTGTG ATTATCTTTT AAAGCCTGTA CAAAAAGATG AATTACTAGA GGTACTTCGT AGAGTTTCAC AAAAAAGCAA AGAGCTTAAT AATCGGCAAA TAGAAAATAG AGAAAAGGAA AGAGCACTCT TTGACCGCAA TCTTTTAGCA CTCATCTGGG GAAAATTCGA TAATTACAAT ATCGAATATG TAACAAAACA TTTAATGCTA TCAAAAGAAA TAAAGTACAT AACTATTAAT CTTGATTTTA CAAATCAGGA AAATCTAACA GAATCAGATA AACGTAATAT TCAGAAGAAT CTCTATATGC AGGCAAGAGA GCTACTAAAA GTTGATGAAT ACCACGTTAT ATTTGATGTC GGTAAACAAG ATTCCTCTTA TGATATTGGT TTTATTTATT GTGATTATCT TGCAAATGAA GCGGGGGTAA CCGAGGGGGA ATATTTAAAA CAATTCAGCC AACTATTAAG CGAAGGAATC AACTGCAAAA TTATGCTATT TGTAGGGAAT AAGGTTGATT CGATAGCAAG GCTATCAGAG TCGTATCAAA CCGCAATGAT TGCAAAGACT TTACAGATGT TTCGAAATGA TAAGGATATT ACCTTTTATG AAGAAAATAT GAATTTAAAT GGAGCCTCCT TATTAGAAAG AAGAAAATTA GATATCTTAA TTCAAGCAGT GGAAGAAAAC AATAAAGAGG AAATTTCCTC AATGGTGGAT AGTATTTATG ATGATATTAA TCAGTCTAAT ATGGATTATA ACCTTATAAA TCTAAACATT AGTTACATAT TATATCAACT GATTTATTTG GCAACGAAAC AGGATGATAA TATTAATCAA GAAGAAATCC TACAATATAT TAGTAAAAAT GCCTTCCATA GAGATGCTAT GCGTGGAAGC CGAAAGCATT TTAAGTTATT TGCTTATGAT TTTTCAGATT ATTTGCAACA ACTTCGTAAA AATGTCTCGA AAGGTATTCT GGCTAGTATT GAAAGGGAAA TTGAGGAGAA CTATGCTGAG AATATAAGTT TAAAATCTTT GAGTGAAAAG TATTTCATTA ATAGTGCTTA CTTGGGCCAG GTATTCAAGA AACAATTTGG CCTACCATTT AAAGATTATT TGAATAATCA TCGTATCGAC CGGGCAGCGG AGTTATTGCT GCGTACGGAC GAAAAGGTGT ATATCGTAGC TGAATTGGTT GGTTATCATA ACCTAGATTA CTTCATCAAT CGTTTTGTCT CCGTGAAGGG TTGTACCCCG ACAAGATATC GAAATCAAAG TAGGTAA
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Protein sequence | MTRYEYCTVV QIHGIAAEWR INMLRVLVVD DEPYIKQGLA MLINWMAEGF TIIGEAANGK EAIRFLQKTK VDLIIADIKM PEMNGIELLE YIKKEKLSDA SYIILSGYYD FQYARSAIQH NCCDYLLKPV QKDELLEVLR RVSQKSKELN NRQIENREKE RALFDRNLLA LIWGKFDNYN IEYVTKHLML SKEIKYITIN LDFTNQENLT ESDKRNIQKN LYMQARELLK VDEYHVIFDV GKQDSSYDIG FIYCDYLANE AGVTEGEYLK QFSQLLSEGI NCKIMLFVGN KVDSIARLSE SYQTAMIAKT LQMFRNDKDI TFYEENMNLN GASLLERRKL DILIQAVEEN NKEEISSMVD SIYDDINQSN MDYNLINLNI SYILYQLIYL ATKQDDNINQ EEILQYISKN AFHRDAMRGS RKHFKLFAYD FSDYLQQLRK NVSKGILASI EREIEENYAE NISLKSLSEK YFINSAYLGQ VFKKQFGLPF KDYLNNHRID RAAELLLRTD EKVYIVAELV GYHNLDYFIN RFVSVKGCTP TRYRNQSR
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