| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0293 |
|---|
| Symbol | |
|---|
| ID | 5744216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 364406 |
|---|
| End bp | 366004 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641291383 |
|---|
| Product | two component AraC family transcriptional regulator |
|---|
| Protein accession | YP_001557419 |
|---|
| Protein GI | 160878451 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAGAG TTTTGTTGGT AGACGACGAG CCTTTAATTT TATCTGGCGT TAAATTTTTA
ATTGATTGGG AAAAGAATGA TTGCATCCTT GCGGGGACAG CTAAAAATGG CGCACAAGCT
TTGGAACTTA TTGATGAGCT TAAGCCAGAT ATTGTGATAA CAGATATCAA TATGCCTATC
ATGAATGGCA TTGAACTTTT GCGTCATACT CAGGAAAATT ATCCGGCAAT TGTGTTTATC
ATGCTGACAA ATCTTGAAGA ATTTGATTTG GCAAGGGAAG CTATGCGTAT GAAAGCAGCA
GATTATTTGA CAAAGTCAAT GATGGAACCC CAAATGTTAG AGAACAGCTT AACTATGGCC
AAAAAAGAAG CCAAAACACG AGGTGGCTTT CTCCATGCGG AAGCAGCAGG ATATTATTTG
TTGGAAAATA AGCGGAAGTT ATTGACCGTC GCGTCGGAGC ATTTTATTTC AAAAAATGAG
ATTAGCAAGC ATGAGTCGGC TATATTGGCG GAACATGGAA TACTGGAAGG TTGGGCATGT
ATACTGATAT GGTTCACTGC AGCCGAGTCT ACCGCTATTT CCAACGATTC GGAAGAAGAT
ACTGAAATCA CTTCTTGGAT GAACGAGATA GTAGAAAATT TGGCACAAAA CAGCTTTTCA
AATTATTTAA TTCAAACAAG ATTTAAAAAC AAACAAAGAT TTCTTTTACT TCACTGGGGG
AAAAGTATAG CTGAAAATGA GAAGCAAGCG GTAATTTTCG CTAAAAGATT AAGTTCCGCT
TCGGAAAATA TTGCTGGATT AAAAGCTAGT GTGTTATATA CAGATGTGTT CAAAAAAGAG
GACAAGCGAA AGGAATGCCT GAAGCAATTA TATGATTTAG ATACCTATTT TTATCTAAAT
AAAACAATGC TTGCAGGATA TCATGAAATT GGAACGACCG TATGCAATCC TTTGGGTCTT
ATGGGTCTTC CGAAAAAGAT GGAAGTCGAA TTGAATAGCT TAAGCATATC AGGTTGTAAT
GACATATTTA CAAAGGCTAT TCATCGGATA AGTGAAATAC CTCATGAAAA GGAAGAGGCA
ATTTGGATTT GTGAAGAAAT TTGCGATGTT TTAAAACGTT GGTTTTCGGA GCGAGGTGAT
GACATCGCTA TTAATAGTAT TTTTCAAAGT TATAAGGAAA TCGAAATGCT TACTGCGAGA
AGTCAGGTTA TTTGTTGGCT GGAAAAGTTA AAGAAAGAAG TTTTGGAATG GTTAAAGCCT
TTGGCGGAAC ATCGTAGTGA TTTGGTGGAT AAAGCCAAAG AATATGTACG AAATAATGTT
GATAAGCGGA TTACGCTTCA AGATACAGCC TCCCATGTAG GCGTCTCATT AGGCTATCTT
TCCTCATTAT TTAAGAAACA AGATGGGCAA AATTTTATTG ACTATGTGAA TAAAAGTAAA
GTAGATCGGG CCTGTGAGCT TATACGTGAA GGAGGCTTAA GGCTAAATGA AATAAGTTAT
ATGTTAGGCT TTGAAAATGC CTATTATTTT AGTAAAGTTT TTCGACGCCA CGTCGGTGTA
ACACCGTCGG AATATCAAAA TGAATTGAAA AATAATTAA
|
|---|
| Protein sequence | MYRVLLVDDE PLILSGVKFL IDWEKNDCIL AGTAKNGAQA LELIDELKPD IVITDINMPI
MNGIELLRHT QENYPAIVFI MLTNLEEFDL AREAMRMKAA DYLTKSMMEP QMLENSLTMA
KKEAKTRGGF LHAEAAGYYL LENKRKLLTV ASEHFISKNE ISKHESAILA EHGILEGWAC
ILIWFTAAES TAISNDSEED TEITSWMNEI VENLAQNSFS NYLIQTRFKN KQRFLLLHWG
KSIAENEKQA VIFAKRLSSA SENIAGLKAS VLYTDVFKKE DKRKECLKQL YDLDTYFYLN
KTMLAGYHEI GTTVCNPLGL MGLPKKMEVE LNSLSISGCN DIFTKAIHRI SEIPHEKEEA
IWICEEICDV LKRWFSERGD DIAINSIFQS YKEIEMLTAR SQVICWLEKL KKEVLEWLKP
LAEHRSDLVD KAKEYVRNNV DKRITLQDTA SHVGVSLGYL SSLFKKQDGQ NFIDYVNKSK
VDRACELIRE GGLRLNEISY MLGFENAYYF SKVFRRHVGV TPSEYQNELK NN
|
|---|
| |