| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4415 |
|---|
| Symbol | |
|---|
| ID | 6208662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 5706565 |
|---|
| End bp | 5707476 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641694081 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001821286 |
|---|
| Protein GI | 182416220 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0031509 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.543799 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATTC CCATCATGTC ACCGGATGCC ATTGCTCCAC TTTGGTCTTC CCTCTCCGAG
TCCGCGATGT TTCGCGACTA CCAAGAGGCG TTTGAAACAG CCACTGGCCT GCCACTCAGC
CTGCGGCGGC CTGGGGTGGA TGGTCGTGAT TCGGCTTCGC CCCAAAGACC TGTCGCTGGT
GGAGCTCCAT TTTGCGCGTT GATGGCCCGC ACAAATCGGG CGTGTGAATC CTGCTTGGCA
CTGCAAAAGC GGCTGGAAGA GGAGGCCCGG CTTCAGCCCA AGACGTTGAA GTGCTTTGCC
GGACTTTGCG AAACCGCCGT GCCCGTCCGG GTGGGAGACC GGCTGATTGC GTTTCTGCAG
ACCGGCCGGA TCCTCATCGA CTCGCCCAGC CGCCGACAGT TCAGCAAGAT CAGTCGTGAA
CTGCTGCAGC TAGGGGAGCA GATCGACGTG AAACAAGCCG AGGAGGCATA TTACGCCACG
CGTGTGCTCA CTTCCGAGCA ATACGAATCG ATGATCCGTT TGCTCACCAT CTTCGCCACG
CACCTAGCCG CCTGCGGGAA CCAGCTCGCG CTCCGGCGGA CGGATCCGGA AAACTCGCCC
GTGGCCCGCG CGCGGGAGAT CATCGACGAA CGCCTGCGGG AGGAGATCTC GCTCGGCGAG
GTTGCGCGCC GGGTGAACGT CAGCGCGGGC TACTTCAGCA TGCTGTTCAA GAAGGCGACC
GGGCTGAACT TCGTCGAGTA CGTCGCCCGG CTGCGGATCG AGAAGGCGAA GGATCTCCTG
CAGGATCCGC AGTTTCGCAT CAGCGAAGCG GCCTATGACG TGGGTTTCCA GTCGCTTTCC
CAGTTCAACC GAAGCTTTCG CCGAGTTGTC GGCGCTTCGC CCAGGGTCTA TCGCGCCCGG
CTCGATTGCT GA
|
|---|
| Protein sequence | MPIPIMSPDA IAPLWSSLSE SAMFRDYQEA FETATGLPLS LRRPGVDGRD SASPQRPVAG
GAPFCALMAR TNRACESCLA LQKRLEEEAR LQPKTLKCFA GLCETAVPVR VGDRLIAFLQ
TGRILIDSPS RRQFSKISRE LLQLGEQIDV KQAEEAYYAT RVLTSEQYES MIRLLTIFAT
HLAACGNQLA LRRTDPENSP VARAREIIDE RLREEISLGE VARRVNVSAG YFSMLFKKAT
GLNFVEYVAR LRIEKAKDLL QDPQFRISEA AYDVGFQSLS QFNRSFRRVV GASPRVYRAR
LDC
|
|---|
| |