More than 300 homologs were found in PanDaTox collection
for query gene Tcr_0038 on replicon NC_007520
Organism: Thiomicrospira crunogena XCL-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007520  Tcr_0038  putative acyl-CoA dehydrogenase  100 
 
 
360 aa  745    Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_2211  acyl-CoA dehydrogenase domain protein  54.87 
 
 
378 aa  393  1e-108  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0970  acyl-CoA dehydrogenase domain protein  48.33 
 
 
379 aa  347  1e-94  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.276335 
 
 
-
 
NC_007947  Mfla_2174  putative acyl-CoA dehydrogenase  40.34 
 
 
382 aa  280  4e-74  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4852  acyl-CoA dehydrogenase-like  40.11 
 
 
395 aa  278  1e-73  Polaromonas sp. JS666  Bacteria  normal  normal  0.150232 
 
 
-
 
NC_007778  RPB_0305  putative acyl-CoA dehydrogenase  40.28 
 
 
376 aa  275  6e-73  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1367 
 
 
-
 
NC_011757  Mchl_1309  acyl-CoA dehydrogenase domain protein  39.77 
 
 
397 aa  263  2e-69  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1150  acyl-CoA dehydrogenase-like protein  39.14 
 
 
397 aa  263  4e-69  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.428628 
 
 
-
 
NC_009720  Xaut_2613  putative acyl-CoA dehydrogenase family protein  39.94 
 
 
373 aa  257  2e-67  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.346291 
 
 
-
 
NC_009485  BBta_5417  putative acyl-CoA dehydrogenase family protein  39.72 
 
 
373 aa  257  2e-67  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2837  putative acyl-CoA dehydrogenase  38.2 
 
 
375 aa  256  4e-67  Methylocella silvestris BL2  Bacteria  n/a    normal  0.926618 
 
 
-
 
NC_010725  Mpop_4667  acyl-CoA dehydrogenase-like protein  37.57 
 
 
396 aa  241  1e-62  Methylobacterium populi BJ001  Bacteria  normal  0.0171462  normal 
 
 
-
 
NC_011894  Mnod_1706  putative acyl-CoA dehydrogenase  35.03 
 
 
375 aa  230  3e-59  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.087432  n/a   
 
 
-
 
NC_010511  M446_4820  putative acyl-CoA dehydrogenase  33.98 
 
 
375 aa  223  4.9999999999999996e-57  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.0078002 
 
 
-
 
NC_008599  CFF8240_0622  acyl-CoA dehydrogenase  38.11 
 
 
354 aa  214  1.9999999999999998e-54  Campylobacter fetus subsp. fetus 82-40  Bacteria  decreased coverage  0.00205931  n/a   
 
 
-
 
NC_010172  Mext_3484  acyl-CoA dehydrogenase type 2  34.37 
 
 
358 aa  212  1e-53  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3792  Acyl-CoA dehydrogenase type 2 domain  34.08 
 
 
358 aa  210  3e-53  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.267616 
 
 
-
 
NC_010725  Mpop_3866  Acyl-CoA dehydrogenase type 2 domain  34.53 
 
 
362 aa  196  8.000000000000001e-49  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0222771 
 
 
-
 
NC_007595  Synpcc7942_B2627  hypothetical protein  29.51 
 
 
353 aa  157  4e-37  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0414836  normal 
 
 
-
 
NC_010322  PputGB1_2274  acyl-CoA dehydrogenase  28.61 
 
 
354 aa  152  5.9999999999999996e-36  Pseudomonas putida GB-1  Bacteria  normal  0.921595  normal  0.572718 
 
 
-
 
NC_002947  PP_3638  acyl-CoA dehydrogenase, putative  28.32 
 
 
354 aa  141  1.9999999999999998e-32  Pseudomonas putida KT2440  Bacteria  normal  0.0587866  normal  0.442088 
 
 
-
 
NC_009512  Pput_2095  Acyl-CoA dehydrogenase-like protein  28.32 
 
 
354 aa  141  1.9999999999999998e-32  Pseudomonas putida F1  Bacteria  normal  normal  0.528653 
 
 
-
 
NC_009632  SaurJH1_0165  hypothetical protein  25.21 
 
 
344 aa  132  1.0000000000000001e-29  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0160  Acyl-CoA dehydrogenase-like protein  25.21 
 
 
344 aa  132  1.0000000000000001e-29  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2929  hypothetical protein  29.64 
 
 
355 aa  130  2.0000000000000002e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_007952  Bxe_B1538  putative acyl-CoA dehydrogenase  28.25 
 
 
367 aa  130  5.0000000000000004e-29  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008544  Bcen2424_6745  hypothetical protein  27.54 
 
 
371 aa  127  2.0000000000000002e-28  Burkholderia cenocepacia HI2424  Bacteria  normal  0.839762  normal  0.367272 
 
 
-
 
NC_008062  Bcen_6511  hypothetical protein  27.54 
 
 
371 aa  127  2.0000000000000002e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6334  putative acyl-CoA dehydrogenase  27.25 
 
 
371 aa  125  1e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_34490  hypothetical protein  31.44 
 
 
355 aa  125  2e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000897326  normal  0.153318 
 
 
-
 
NC_007953  Bxe_C0102  putative acyl-CoA dehydrogenase  29.34 
 
 
367 aa  124  3e-27  Burkholderia xenovorans LB400  Bacteria  normal  0.988493  normal 
 
 
-
 
NC_010002  Daci_3928  acyl-CoA dehydrogenase, putative  26.69 
 
 
366 aa  118  9.999999999999999e-26  Delftia acidovorans SPH-1  Bacteria  normal  0.438549  normal  0.0461862 
 
 
-
 
NC_008532  STER_0700  acyl-CoA dehydrogenase family protein  25.61 
 
 
354 aa  118  1.9999999999999998e-25  Streptococcus thermophilus LMD-9  Bacteria  normal  0.564675  n/a   
 
 
-
 
NC_007406  Nwi_0459  hypothetical protein  26.11 
 
 
367 aa  117  3e-25  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5825  putative acyl-CoA dehydrogenase  25.74 
 
 
365 aa  102  1e-20  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.803301 
 
 
-
 
NC_013510  Tcur_1452  acyl-CoA dehydrogenase  22.29 
 
 
350 aa  84.3  0.000000000000003  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00428618  n/a   
 
 
-
 
NC_004347  SO_1897  isovaleryl-CoA dehydrogenase  23.64 
 
 
389 aa  82.8  0.000000000000009  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_1672  isovaleryl-CoA dehydrogenase  23.37 
 
 
389 aa  80.9  0.00000000000003  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2322  isovaleryl-CoA dehydrogenase  23.37 
 
 
389 aa  80.9  0.00000000000003  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2394  isovaleryl-CoA dehydrogenase  23.37 
 
 
389 aa  80.9  0.00000000000003  Shewanella sp. MR-7  Bacteria  normal  normal  0.869835 
 
 
-
 
NC_009092  Shew_2570  acyl-CoA dehydrogenase domain-containing protein  22.83 
 
 
389 aa  80.5  0.00000000000004  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2245  acyl-CoA dehydrogenase-like protein  22.55 
 
 
389 aa  80.1  0.00000000000005  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2846  acyl-CoA dehydrogenase domain-containing protein  22.55 
 
 
389 aa  80.1  0.00000000000006  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2797  acyl-CoA dehydrogenase domain-containing protein  25.08 
 
 
389 aa  78.6  0.0000000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1458  acyl-CoA dehydrogenase domain-containing protein  23.1 
 
 
389 aa  78.2  0.0000000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.499178 
 
 
-
 
NC_002950  PG1076  acyl-CoA dehydrogenase, short-chain specific  25.71 
 
 
379 aa  77.8  0.0000000000003  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.228764 
 
 
-
 
NC_008345  Sfri_2727  isovaleryl-CoA dehydrogenase  24.76 
 
 
389 aa  77  0.0000000000004  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1362  isovaleryl-CoA dehydrogenase  22.28 
 
 
389 aa  77  0.0000000000005  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.431847 
 
 
-
 
NC_009052  Sbal_2828  acyl-CoA dehydrogenase domain-containing protein  22.55 
 
 
389 aa  76.6  0.0000000000005  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2973  acyl-CoA dehydrogenase domain-containing protein  22.28 
 
 
389 aa  76.6  0.0000000000005  Shewanella baltica OS195  Bacteria  normal  0.698816  normal  0.555945 
 
 
-
 
NC_011663  Sbal223_1530  acyl-CoA dehydrogenase domain protein  22.55 
 
 
389 aa  76.6  0.0000000000006  Shewanella baltica OS223  Bacteria  normal  0.295941  normal 
 
 
-
 
NC_010718  Nther_1881  butyryl-CoA dehydrogenase  25 
 
 
379 aa  76.6  0.0000000000006  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.593492  normal  0.222475 
 
 
-
 
NC_011138  MADE_02412  isovaleryl-CoA dehydrogenase  22.62 
 
 
389 aa  76.6  0.0000000000006  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.719746  n/a   
 
 
-
 
NC_010506  Swoo_3223  acyl-CoA dehydrogenase domain-containing protein  24.76 
 
 
389 aa  75.1  0.000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0153994 
 
 
-
 
NC_013171  Apre_1356  acyl-CoA dehydrogenase domain protein  23.43 
 
 
379 aa  74.7  0.000000000002  Anaerococcus prevotii DSM 20548  Bacteria  unclonable  0.00000000100384  n/a   
 
 
-
 
NC_009524  PsycPRwf_2062  acyl-CoA dehydrogenase domain-containing protein  24.42 
 
 
395 aa  75.1  0.000000000002  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0585  acyl-CoA dehydrogenase domain-containing protein  26.92 
 
 
379 aa  74.7  0.000000000003  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013744  Htur_4358  acyl-CoA dehydrogenase domain protein  23.37 
 
 
381 aa  74.3  0.000000000003  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0892384  n/a   
 
 
-
 
NC_010501  PputW619_1812  acyl-CoA dehydrogenase domain-containing protein  25.42 
 
 
387 aa  73.9  0.000000000004  Pseudomonas putida W619  Bacteria  normal  0.0871457  normal  0.415388 
 
 
-
 
NC_010322  PputGB1_3662  acyl-CoA dehydrogenase domain-containing protein  25.42 
 
 
387 aa  73.2  0.000000000007  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.0000000131881 
 
 
-
 
NC_002947  PP_4064  acyl-CoA dehydrogenase domain-containing protein  24.89 
 
 
424 aa  72.4  0.00000000001  Pseudomonas putida KT2440  Bacteria  normal  0.322511  hitchhiker  0.0046695 
 
 
-
 
NC_013061  Phep_0837  acyl-CoA dehydrogenase domain protein  23.46 
 
 
390 aa  72.4  0.00000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2121  isovaleryl-CoA dehydrogenase  24.84 
 
 
388 aa  72.4  0.00000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.274166  n/a   
 
 
-
 
NC_009512  Pput_1777  acyl-CoA dehydrogenase domain-containing protein  25.42 
 
 
387 aa  72.4  0.00000000001  Pseudomonas putida F1  Bacteria  normal  normal  0.0186488 
 
 
-
 
NC_013411  GYMC61_1052  acyl-CoA dehydrogenase domain protein  23.54 
 
 
386 aa  71.6  0.00000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012034  Athe_1232  acyl-CoA dehydrogenase domain protein  23.18 
 
 
381 aa  72  0.00000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3450  acyl-CoA dehydrogenase domain protein  24.6 
 
 
380 aa  71.6  0.00000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_3341  acyl-CoA dehydrogenase domain protein  22.76 
 
 
379 aa  71.2  0.00000000003  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4686  acyl-CoA dehydrogenase domain protein  25.42 
 
 
393 aa  70.5  0.00000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0162224  normal 
 
 
-
 
NC_009439  Pmen_2033  isovaleryl-CoA dehydrogenase  22.49 
 
 
387 aa  70.9  0.00000000004  Pseudomonas mendocina ymp  Bacteria  normal  0.0666462  normal  0.420206 
 
 
-
 
NC_013743  Htur_1175  acyl-CoA dehydrogenase domain protein  24 
 
 
381 aa  70.9  0.00000000004  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007958  RPD_0356  isovaleryl-CoA dehydrogenase  25.81 
 
 
392 aa  70.5  0.00000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.969667  decreased coverage  0.00000934354 
 
 
-
 
NC_013457  VEA_000377  isovaleryl-CoA dehydrogenase  24.42 
 
 
389 aa  69.7  0.00000000007  Vibrio sp. Ex25  Bacteria  normal  0.749145  n/a   
 
 
-
 
NC_007492  Pfl01_3656  isovaleryl-CoA dehydrogenase  24.54 
 
 
387 aa  69.7  0.00000000007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.179163  normal  0.0293073 
 
 
-
 
NC_008782  Ajs_3779  isovaleryl-CoA dehydrogenase  24.88 
 
 
396 aa  69.7  0.00000000008  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0279  acyl-CoA dehydrogenase oxidoreductase protein  25.94 
 
 
393 aa  68.6  0.0000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  0.236676  normal 
 
 
-
 
NC_011992  Dtpsy_3057  acyl-CoA dehydrogenase domain protein  24.88 
 
 
396 aa  68.9  0.0000000001  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl1788  hypothetical protein  22.83 
 
 
389 aa  69.3  0.0000000001  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010623  Bphy_3562  acyl-CoA dehydrogenase domain-containing protein  24.58 
 
 
393 aa  68.6  0.0000000001  Burkholderia phymatum STM815  Bacteria  normal  normal  0.364762 
 
 
-
 
NC_007204  Psyc_1172  acyl-CoA dehydrogenase  25.56 
 
 
384 aa  68.9  0.0000000001  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.336122 
 
 
-
 
NC_014212  Mesil_0067  acyl-CoA dehydrogenase domain protein  24.16 
 
 
394 aa  68.9  0.0000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_1233  acyl-CoA dehydrogenase-like  25.56 
 
 
384 aa  68.9  0.0000000001  Psychrobacter cryohalolentis K5  Bacteria  normal  0.831269  normal  0.440096 
 
 
-
 
NC_013440  Hoch_3778  acyl-CoA dehydrogenase domain protein  22.71 
 
 
382 aa  69.3  0.0000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.341587  normal  0.271407 
 
 
-
 
NC_006368  lpp1787  hypothetical protein  22.83 
 
 
389 aa  68.6  0.0000000002  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007204  Psyc_0313  isovaleryl-CoA dehydrogenase  24.42 
 
 
395 aa  68.2  0.0000000002  Psychrobacter arcticus 273-4  Bacteria  normal  0.740089  normal 
 
 
-
 
NC_014150  Bmur_1546  acyl-CoA dehydrogenase domain protein  23.82 
 
 
381 aa  68.2  0.0000000002  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2805  acyl-CoA dehydrogenase domain-containing protein  23.79 
 
 
386 aa  68.6  0.0000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5121  acyl-CoA dehydrogenase domain-containing protein  23.75 
 
 
393 aa  68.2  0.0000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.975401  normal 
 
 
-
 
NC_013595  Sros_5850  acyl-CoA dehydrogenase, C-terminal domain protein  20.38 
 
 
380 aa  67.8  0.0000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.856697 
 
 
-
 
NC_010002  Daci_5991  acyl-CoA dehydrogenase domain-containing protein  25.35 
 
 
395 aa  67.8  0.0000000003  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.0000302563 
 
 
-
 
NC_008825  Mpe_A3360  isovaleryl-CoA dehydrogenase  24.88 
 
 
410 aa  67.8  0.0000000003  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013922  Nmag_2307  acyl-CoA dehydrogenase domain protein  23.67 
 
 
381 aa  67.4  0.0000000004  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_013457  VEA_001543  putative acyl-CoA dehydrogenase  22.71 
 
 
335 aa  67.4  0.0000000004  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3948  Acyl-CoA dehydrogenase-like  22.01 
 
 
385 aa  67.4  0.0000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.54725  normal 
 
 
-
 
NC_007952  Bxe_B0960  isovaleryl-CoA dehydrogenase  25 
 
 
393 aa  67.4  0.0000000004  Burkholderia xenovorans LB400  Bacteria  normal  0.433991  normal  0.388602 
 
 
-
 
NC_008391  Bamb_4588  acyl-CoA dehydrogenase domain-containing protein  23.75 
 
 
393 aa  67.4  0.0000000004  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0020  isovaleryl-CoA dehydrogenase  24.17 
 
 
382 aa  67  0.0000000005  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0037  acyl-CoA dehydrogenase domain-containing protein  26.78 
 
 
387 aa  67  0.0000000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.119681  n/a   
 
 
-
 
NC_009505  BOV_0017  isovaleryl-CoA dehydrogenase  24.17 
 
 
382 aa  67  0.0000000005  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2584  butyryl-CoA dehydrogenase  23.45 
 
 
379 aa  67  0.0000000005  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
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