More than 300 homologs were found in PanDaTox collection
for query gene PP_3638 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_3638  acyl-CoA dehydrogenase, putative  100 
 
 
354 aa  704    Pseudomonas putida KT2440  Bacteria  normal  0.0587866  normal  0.442088 
 
 
-
 
NC_010322  PputGB1_2274  acyl-CoA dehydrogenase  94.35 
 
 
354 aa  659    Pseudomonas putida GB-1  Bacteria  normal  0.921595  normal  0.572718 
 
 
-
 
NC_009512  Pput_2095  Acyl-CoA dehydrogenase-like protein  98.59 
 
 
354 aa  692    Pseudomonas putida F1  Bacteria  normal  normal  0.528653 
 
 
-
 
NC_009656  PSPA7_2929  hypothetical protein  67.52 
 
 
355 aa  437  1e-121  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_008463  PA14_34490  hypothetical protein  66.38 
 
 
355 aa  409  1e-113  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000897326  normal  0.153318 
 
 
-
 
NC_010512  Bcenmc03_6334  putative acyl-CoA dehydrogenase  52.3 
 
 
371 aa  340  2e-92  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_6511  hypothetical protein  51.72 
 
 
371 aa  336  2.9999999999999997e-91  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6745  hypothetical protein  51.72 
 
 
371 aa  336  2.9999999999999997e-91  Burkholderia cenocepacia HI2424  Bacteria  normal  0.839762  normal  0.367272 
 
 
-
 
NC_007406  Nwi_0459  hypothetical protein  52.63 
 
 
367 aa  334  1e-90  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1538  putative acyl-CoA dehydrogenase  51.72 
 
 
367 aa  322  8e-87  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5825  putative acyl-CoA dehydrogenase  50.14 
 
 
365 aa  293  2e-78  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.803301 
 
 
-
 
NC_007953  Bxe_C0102  putative acyl-CoA dehydrogenase  53.43 
 
 
367 aa  293  4e-78  Burkholderia xenovorans LB400  Bacteria  normal  0.988493  normal 
 
 
-
 
NC_010002  Daci_3928  acyl-CoA dehydrogenase, putative  50.14 
 
 
366 aa  291  9e-78  Delftia acidovorans SPH-1  Bacteria  normal  0.438549  normal  0.0461862 
 
 
-
 
NC_008532  STER_0700  acyl-CoA dehydrogenase family protein  44.57 
 
 
354 aa  283  3.0000000000000004e-75  Streptococcus thermophilus LMD-9  Bacteria  normal  0.564675  n/a   
 
 
-
 
NC_007595  Synpcc7942_B2627  hypothetical protein  42.94 
 
 
353 aa  234  2.0000000000000002e-60  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0414836  normal 
 
 
-
 
NC_007520  Tcr_0038  putative acyl-CoA dehydrogenase  28.32 
 
 
360 aa  155  1e-36  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2837  putative acyl-CoA dehydrogenase  32.24 
 
 
375 aa  137  3.0000000000000003e-31  Methylocella silvestris BL2  Bacteria  n/a    normal  0.926618 
 
 
-
 
NC_007947  Mfla_2174  putative acyl-CoA dehydrogenase  31.29 
 
 
382 aa  130  3e-29  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0305  putative acyl-CoA dehydrogenase  30.82 
 
 
376 aa  129  6e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1367 
 
 
-
 
NC_013422  Hneap_2211  acyl-CoA dehydrogenase domain protein  27.09 
 
 
378 aa  121  1.9999999999999998e-26  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0970  acyl-CoA dehydrogenase domain protein  29.93 
 
 
379 aa  119  9e-26  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.276335 
 
 
-
 
NC_009720  Xaut_2613  putative acyl-CoA dehydrogenase family protein  28.77 
 
 
373 aa  119  9e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.346291 
 
 
-
 
NC_013510  Tcur_1452  acyl-CoA dehydrogenase  30.17 
 
 
350 aa  119  9.999999999999999e-26  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00428618  n/a   
 
 
-
 
NC_010172  Mext_3484  acyl-CoA dehydrogenase type 2  31.31 
 
 
358 aa  115  1.0000000000000001e-24  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3792  Acyl-CoA dehydrogenase type 2 domain  30.99 
 
 
358 aa  114  3e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.267616 
 
 
-
 
NC_007948  Bpro_4852  acyl-CoA dehydrogenase-like  27.45 
 
 
395 aa  110  4.0000000000000004e-23  Polaromonas sp. JS666  Bacteria  normal  normal  0.150232 
 
 
-
 
NC_009485  BBta_5417  putative acyl-CoA dehydrogenase family protein  28.73 
 
 
373 aa  104  2e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_0165  hypothetical protein  25.21 
 
 
344 aa  102  8e-21  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0160  Acyl-CoA dehydrogenase-like protein  25.21 
 
 
344 aa  102  8e-21  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1150  acyl-CoA dehydrogenase-like protein  29.1 
 
 
397 aa  102  1e-20  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.428628 
 
 
-
 
NC_011894  Mnod_1706  putative acyl-CoA dehydrogenase  31.58 
 
 
375 aa  101  2e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.087432  n/a   
 
 
-
 
NC_008599  CFF8240_0622  acyl-CoA dehydrogenase  28.43 
 
 
354 aa  101  2e-20  Campylobacter fetus subsp. fetus 82-40  Bacteria  decreased coverage  0.00205931  n/a   
 
 
-
 
NC_010511  M446_4820  putative acyl-CoA dehydrogenase  31.65 
 
 
375 aa  100  4e-20  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.0078002 
 
 
-
 
NC_011757  Mchl_1309  acyl-CoA dehydrogenase domain protein  28.32 
 
 
397 aa  98.6  1e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3866  Acyl-CoA dehydrogenase type 2 domain  30.81 
 
 
362 aa  97.4  3e-19  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0222771 
 
 
-
 
NC_010725  Mpop_4667  acyl-CoA dehydrogenase-like protein  28.48 
 
 
396 aa  90.9  3e-17  Methylobacterium populi BJ001  Bacteria  normal  0.0171462  normal 
 
 
-
 
NC_009952  Dshi_0838  acyl-CoA dehydrogenase domain protein  24.64 
 
 
382 aa  75.5  0.000000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.541206 
 
 
-
 
NC_007348  Reut_B4257  butyryl-CoA dehydrogenase  27.98 
 
 
377 aa  72.4  0.00000000001  Ralstonia eutropha JMP134  Bacteria  normal  0.725306  n/a   
 
 
-
 
NC_010524  Lcho_0727  hypothetical protein  34.97 
 
 
224 aa  70.9  0.00000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0730349 
 
 
-
 
NC_012034  Athe_1232  acyl-CoA dehydrogenase domain protein  24.69 
 
 
381 aa  71.2  0.00000000003  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3775  acyl-CoA dehydrogenase domain protein  27.22 
 
 
386 aa  70.5  0.00000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.212433  normal  0.155443 
 
 
-
 
NC_008044  TM1040_0732  isovaleryl-CoA dehydrogenase  26.29 
 
 
387 aa  69.7  0.00000000008  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05480  acyl-CoA dehydrogenase  25.1 
 
 
389 aa  69.3  0.0000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008044  TM1040_1559  acyl-CoA dehydrogenase-like  25.55 
 
 
387 aa  69.3  0.0000000001  Ruegeria sp. TM1040  Bacteria  normal  normal  0.456319 
 
 
-
 
NC_006368  lpp1787  hypothetical protein  23.32 
 
 
389 aa  68.6  0.0000000002  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007802  Jann_1142  isovaleryl-CoA dehydrogenase  28.57 
 
 
386 aa  68.2  0.0000000002  Jannaschia sp. CCS1  Bacteria  normal  0.268805  normal  0.402986 
 
 
-
 
NC_007908  Rfer_0994  acyl-CoA dehydrogenase-like  25.96 
 
 
382 aa  68.2  0.0000000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl1788  hypothetical protein  23.48 
 
 
389 aa  67.8  0.0000000003  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013202  Hmuk_2082  acyl-CoA dehydrogenase domain protein  25.44 
 
 
376 aa  67.4  0.0000000004  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_009952  Dshi_1297  acyl-CoA dehydrogenase domain protein  27.35 
 
 
387 aa  66.6  0.0000000005  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.329164  normal  0.246274 
 
 
-
 
NC_008740  Maqu_2121  isovaleryl-CoA dehydrogenase  25.7 
 
 
388 aa  66.6  0.0000000006  Marinobacter aquaeolei VT8  Bacteria  normal  0.274166  n/a   
 
 
-
 
NC_009077  Mjls_4147  isovaleryl-CoA dehydrogenase  27.14 
 
 
380 aa  66.6  0.0000000007  Mycobacterium sp. JLS  Bacteria  normal  normal  0.805269 
 
 
-
 
NC_009675  Anae109_2136  acyl-CoA dehydrogenase domain-containing protein  22.91 
 
 
380 aa  65.9  0.000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.281355 
 
 
-
 
NC_010338  Caul_0130  acyl-CoA dehydrogenase domain-containing protein  26.57 
 
 
387 aa  64.7  0.000000002  Caulobacter sp. K31  Bacteria  normal  0.654593  normal 
 
 
-
 
NC_013757  Gobs_3923  acyl-CoA dehydrogenase domain protein  25.87 
 
 
381 aa  65.1  0.000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_5260  Acyl-CoA dehydrogenase type 2 domain  23.83 
 
 
426 aa  63.9  0.000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.997637  normal  0.924081 
 
 
-
 
NC_010338  Caul_1892  acyl-CoA dehydrogenase domain-containing protein  24.06 
 
 
378 aa  63.5  0.000000005  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_0539  acyl-CoA dehydrogenase domain-containing protein  24.82 
 
 
388 aa  63.2  0.000000007  Maricaulis maris MCS10  Bacteria  normal  0.191308  normal  0.162597 
 
 
-
 
NC_009719  Plav_0463  acyl-CoA dehydrogenase domain-containing protein  22.66 
 
 
385 aa  63.2  0.000000007  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.547783  normal 
 
 
-
 
NC_013595  Sros_5850  acyl-CoA dehydrogenase, C-terminal domain protein  33.73 
 
 
380 aa  62.8  0.000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.856697 
 
 
-
 
NC_013946  Mrub_0264  acyl-CoA dehydrogenase domain-containing protein  26.09 
 
 
394 aa  62.8  0.000000009  Meiothermus ruber DSM 1279  Bacteria  normal  0.0644181  normal  0.99067 
 
 
-
 
NC_012029  Hlac_1318  acyl-CoA dehydrogenase domain protein  26.18 
 
 
384 aa  62.8  0.000000009  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal  0.0793911 
 
 
-
 
NC_008705  Mkms_1317  acyl-CoA dehydrogenase domain-containing protein  25.91 
 
 
388 aa  62  0.00000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.247959 
 
 
-
 
NC_009972  Haur_3567  acyl-CoA dehydrogenase domain-containing protein  25.68 
 
 
382 aa  62.4  0.00000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1336  acyl-CoA dehydrogenase domain-containing protein  25.91 
 
 
388 aa  62  0.00000001  Mycobacterium sp. JLS  Bacteria  normal  0.11867  normal 
 
 
-
 
NC_007958  RPD_0356  isovaleryl-CoA dehydrogenase  23.84 
 
 
392 aa  62.4  0.00000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.969667  decreased coverage  0.00000934354 
 
 
-
 
NC_008146  Mmcs_1300  acyl-CoA dehydrogenase-like protein  25.91 
 
 
388 aa  62  0.00000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009073  Pcal_0167  acyl-CoA dehydrogenase domain-containing protein  26.02 
 
 
376 aa  62.4  0.00000001  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal 
 
 
-
 
NC_013205  Aaci_2056  acyl-CoA dehydrogenase domain protein  22.16 
 
 
377 aa  61.6  0.00000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.232194  n/a   
 
 
-
 
NC_007951  Bxe_A3574  putative acyl-CoA dehydrogenase  23.51 
 
 
377 aa  61.6  0.00000002  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1853  acyl-CoA dehydrogenase type 2  23.24 
 
 
416 aa  61.6  0.00000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1719  acyl-CoA dehydrogenase domain-containing protein  25.1 
 
 
389 aa  60.8  0.00000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_06620  butyryl-CoA dehydrogenase  23.48 
 
 
380 aa  60.1  0.00000005  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4743  butyryl-CoA dehydrogenase  25.1 
 
 
417 aa  60.1  0.00000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1764  acyl-CoA dehydrogenase domain-containing protein  24.73 
 
 
380 aa  59.7  0.00000007  Sphingomonas wittichii RW1  Bacteria  normal  0.937718  normal 
 
 
-
 
NC_011138  MADE_02412  isovaleryl-CoA dehydrogenase  23.85 
 
 
389 aa  59.7  0.00000008  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.719746  n/a   
 
 
-
 
NC_012560  Avin_49560  Acyl-CoA dehydrogenase  24.05 
 
 
393 aa  59.3  0.00000009  Azotobacter vinelandii DJ  Bacteria  normal  0.531636  n/a   
 
 
-
 
NC_013739  Cwoe_1659  acyl-CoA dehydrogenase domain protein  26.21 
 
 
390 aa  59.3  0.00000009  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.487392 
 
 
-
 
NC_010681  Bphyt_0615  acyl-CoA dehydrogenase domain protein  21.52 
 
 
387 aa  59.3  0.00000009  Burkholderia phytofirmans PsJN  Bacteria  normal  0.210833  normal  0.0397055 
 
 
-
 
NC_008228  Patl_2925  isovaleryl-CoA dehydrogenase  23.89 
 
 
389 aa  59.3  0.00000009  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1603  isovaleryl-CoA dehydrogenase  27.41 
 
 
389 aa  58.9  0.0000001  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_3193  acyl-CoA dehydrogenase domain-containing protein  27.38 
 
 
399 aa  58.9  0.0000001  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2118  acyl-CoA dehydrogenase domain-containing protein  24.22 
 
 
382 aa  58.5  0.0000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.0463825  n/a   
 
 
-
 
NC_007952  Bxe_B1358  hypothetical protein  23.15 
 
 
434 aa  58.9  0.0000001  Burkholderia xenovorans LB400  Bacteria  normal  0.992963  normal  0.0243206 
 
 
-
 
NC_014158  Tpau_1058  acyl-CoA dehydrogenase domain protein  23.69 
 
 
386 aa  58.9  0.0000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.405365  n/a   
 
 
-
 
NC_007974  Rmet_5507  long-chain-acyl-CoA dehydrogenase  24.16 
 
 
385 aa  59.3  0.0000001  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_2576  acyl-CoA dehydrogenase domain protein  25.19 
 
 
378 aa  58.9  0.0000001  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_2850  acyl-CoA dehydrogenase domain-containing protein  31.58 
 
 
381 aa  58.5  0.0000001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0232  acyl-CoA dehydrogenase domain protein  26.44 
 
 
382 aa  59.3  0.0000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.359869 
 
 
-
 
NC_009675  Anae109_2137  acyl-CoA dehydrogenase domain-containing protein  26.28 
 
 
382 aa  59.3  0.0000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.545271  normal  0.220827 
 
 
-
 
NC_008726  Mvan_0906  acyl-CoA dehydrogenase domain-containing protein  30.38 
 
 
380 aa  58.5  0.0000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_3243  acyl-CoA dehydrogenase domain-containing protein  27.38 
 
 
399 aa  58.2  0.0000002  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1168  acyl-CoA dehydrogenase domain-containing protein  28.4 
 
 
385 aa  58.5  0.0000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.437637  normal 
 
 
-
 
NC_007333  Tfu_1281  butyryl-CoA dehydrogenase  25.17 
 
 
387 aa  58.5  0.0000002  Thermobifida fusca YX  Bacteria  normal  0.33384  n/a   
 
 
-
 
NC_007493  RSP_2506  isovaleryl-CoA dehydrogenase  28.4 
 
 
385 aa  58.5  0.0000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.791052  n/a   
 
 
-
 
NC_014150  Bmur_1546  acyl-CoA dehydrogenase domain protein  26.12 
 
 
381 aa  58.5  0.0000002  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1843  acyl-CoA dehydrogenase domain protein  24.92 
 
 
380 aa  58.2  0.0000002  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0818  acyl-CoA dehydrogenase domain-containing protein  24.74 
 
 
381 aa  58.2  0.0000002  Nocardioides sp. JS614  Bacteria  normal  0.372759  n/a   
 
 
-
 
NC_008146  Mmcs_3181  acyl-CoA dehydrogenase-like protein  27.38 
 
 
399 aa  58.2  0.0000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4666  acyl-CoA dehydrogenase domain-containing protein  26.29 
 
 
375 aa  58.2  0.0000002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.815528  normal  0.395379 
 
 
-
 
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