More than 300 homologs were found in PanDaTox collection
for query gene Sdel_1983 on replicon NC_013512
Organism: Sulfurospirillum deleyianum DSM 6946



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013512  Sdel_1983  response regulator receiver  100 
 
 
428 aa  870    Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.616596  n/a   
 
 
-
 
NC_009943  Dole_1546  histidine kinase  39.66 
 
 
545 aa  89.4  1e-16  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1943  GAF sensor hybrid histidine kinase  38.66 
 
 
1468 aa  89.4  1e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1777  metal dependent phosphohydrolase, HD region with response regulator receiver modulation  36.97 
 
 
414 aa  88.6  2e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  41.32 
 
 
437 aa  87.8  4e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002502  BarA sensory histidine kinase  45.61 
 
 
932 aa  87.4  4e-16  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_1980  response regulator receiver  42.59 
 
 
126 aa  87  6e-16  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1098  PAS:GGDEF  38.84 
 
 
705 aa  85.9  0.000000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2937  two component transcriptional regulator, winged helix family  35.04 
 
 
243 aa  85.9  0.000000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2297  putative PAS/PAC sensor protein  38.33 
 
 
484 aa  85.5  0.000000000000001  Magnetococcus sp. MC-1  Bacteria  normal  0.0617558  normal 
 
 
-
 
NC_013757  Gobs_4657  two component transcriptional regulator, winged helix family  35.94 
 
 
240 aa  85.5  0.000000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0717  two component transcriptional regulator, winged helix family  35.54 
 
 
242 aa  84.3  0.000000000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00000387016 
 
 
-
 
NC_009439  Pmen_3648  multi-sensor hybrid histidine kinase  36.75 
 
 
1237 aa  84.7  0.000000000000003  Pseudomonas mendocina ymp  Bacteria  normal  0.289797  normal 
 
 
-
 
NC_007912  Sde_2054  response regulator receiver domain-containing protein  37.82 
 
 
198 aa  84.7  0.000000000000003  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.595634 
 
 
-
 
NC_011138  MADE_02504  Signal transduction histidine kinase  40.83 
 
 
667 aa  84.7  0.000000000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  41.32 
 
 
437 aa  84.3  0.000000000000003  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4117  hybrid sensory histidine kinase BarA  46.73 
 
 
948 aa  84  0.000000000000004  Colwellia psychrerythraea 34H  Bacteria  normal  0.598015  n/a   
 
 
-
 
NC_013174  Jden_2051  two component transcriptional regulator, winged helix family  37.61 
 
 
236 aa  84.3  0.000000000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_03530  hybrid sensory histidine kinase BarA  44.74 
 
 
932 aa  84.3  0.000000000000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007484  Noc_1271  hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase  41.53 
 
 
1499 aa  84  0.000000000000005  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.422796  n/a   
 
 
-
 
NC_013235  Namu_2566  two component transcriptional regulator, winged helix family  36.13 
 
 
229 aa  84  0.000000000000005  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000356007  hitchhiker  0.00345607 
 
 
-
 
NC_009012  Cthe_1825  Hpt sensor hybrid histidine kinase  35.37 
 
 
932 aa  84  0.000000000000005  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1055  DNA-binding response regulator SrrA  36.75 
 
 
241 aa  83.6  0.000000000000006  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4069  PAS/PAC sensor hybrid histidine kinase  38.66 
 
 
1284 aa  83.6  0.000000000000006  Ralstonia eutropha JMP134  Bacteria  normal  0.92301  n/a   
 
 
-
 
NC_013521  Sked_31480  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  35.9 
 
 
239 aa  83.2  0.000000000000007  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00376265  normal  0.556858 
 
 
-
 
NC_010184  BcerKBAB4_1399  two component transcriptional regulator  36.75 
 
 
238 aa  83.2  0.000000000000008  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.129694  n/a   
 
 
-
 
NC_008531  LEUM_1732  DNA-binding response regulator  33.33 
 
 
229 aa  83.2  0.000000000000008  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.019008  n/a   
 
 
-
 
NC_011071  Smal_3089  response regulator receiver protein  41.18 
 
 
133 aa  83.2  0.000000000000009  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.22915 
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  32.26 
 
 
226 aa  83.2  0.000000000000009  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_011898  Ccel_0246  two component transcriptional regulator, winged helix family  41.38 
 
 
225 aa  83.2  0.000000000000009  Clostridium cellulolyticum H10  Bacteria  normal  0.0272164  n/a   
 
 
-
 
NC_009012  Cthe_0286  response regulator receiver sensor signal transduction histidine kinase  39.34 
 
 
424 aa  83.2  0.000000000000009  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.136894  n/a   
 
 
-
 
NC_011145  AnaeK_0879  two component, sigma54 specific, transcriptional regulator, Fis family  36.07 
 
 
466 aa  82.8  0.00000000000001  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2313  two component transcriptional regulator  31.52 
 
 
228 aa  82.8  0.00000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0313786  n/a   
 
 
-
 
NC_013595  Sros_4916  response regulator receiver protein  34.88 
 
 
233 aa  82.8  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0311  two component transcriptional regulator, winged helix family protein  36.13 
 
 
228 aa  82.8  0.00000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00012342  n/a   
 
 
-
 
NC_009719  Plav_1017  two component transcriptional regulator  36.29 
 
 
229 aa  82.8  0.00000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.957911  normal  0.735899 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  44.17 
 
 
337 aa  82.4  0.00000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_002947  PP_4173  integral membrane sensor hybrid histidine kinase  35.59 
 
 
643 aa  81.6  0.00000000000002  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1278  sensory box protein/response regulator  38.02 
 
 
705 aa  82.4  0.00000000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.517683  n/a   
 
 
-
 
NC_009632  SaurJH1_1580  response regulator receiver  35.04 
 
 
241 aa  82.4  0.00000000000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1382  response regulator PleD  37.1 
 
 
457 aa  82  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.390598 
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  38.64 
 
 
156 aa  81.6  0.00000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007958  RPD_0666  response regulator receiver  38.98 
 
 
240 aa  82  0.00000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2051  two component transcriptional regulator, winged helix family  35.82 
 
 
247 aa  82.4  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.520505  normal 
 
 
-
 
NC_009487  SaurJH9_1549  two component transcriptional regulator  35.04 
 
 
241 aa  82.4  0.00000000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02212  Signal transduction histidine kinase  45.13 
 
 
1054 aa  81.6  0.00000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A2032  hybrid sensory histidine kinase BarA  42.11 
 
 
927 aa  82  0.00000000000002  Vibrio cholerae O395  Bacteria  normal  0.0864566  n/a   
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  31.72 
 
 
229 aa  82  0.00000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5761  multi-sensor hybrid histidine kinase  34.88 
 
 
1204 aa  82  0.00000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.122146 
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  34.43 
 
 
310 aa  81.6  0.00000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_003909  BCE_1601  DNA-binding response regulator ResD  35.04 
 
 
250 aa  81.3  0.00000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  0.953648  n/a   
 
 
-
 
NC_005945  BAS1386  DNA-binding response regulator ResD  35.04 
 
 
238 aa  81.6  0.00000000000003  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1359  response regulator  35.04 
 
 
238 aa  81.6  0.00000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0319788  n/a   
 
 
-
 
NC_006274  BCZK1358  response regulator  35.04 
 
 
238 aa  81.6  0.00000000000003  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1637  DNA-binding response regulator ResD  35.04 
 
 
250 aa  81.3  0.00000000000003  Bacillus cereus AH187  Bacteria  normal  0.0246031  n/a   
 
 
-
 
NC_007530  GBAA_1497  DNA-binding response regulator ResD  35.04 
 
 
238 aa  81.6  0.00000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.862661  n/a   
 
 
-
 
NC_011772  BCG9842_B2021  regulatory protein VanR  30.36 
 
 
228 aa  81.6  0.00000000000003  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_0833  two component, sigma54 specific, Fis family transcriptional regulator  35.25 
 
 
466 aa  81.3  0.00000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.96038  n/a   
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  37.7 
 
 
232 aa  81.3  0.00000000000003  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4546  two component transcriptional regulator  37.29 
 
 
229 aa  81.6  0.00000000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.926448 
 
 
-
 
NC_007954  Sden_1191  hybrid sensory histidine kinase BarA  40.57 
 
 
950 aa  81.3  0.00000000000003  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000146059  n/a   
 
 
-
 
NC_007954  Sden_3461  response regulator receiver  38.66 
 
 
226 aa  81.3  0.00000000000003  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.000000000124466  n/a   
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  39.67 
 
 
301 aa  81.3  0.00000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  35.29 
 
 
231 aa  81.3  0.00000000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_012560  Avin_37090  alginate regulatory hybrid histidine protein kinase GacS  33.87 
 
 
905 aa  81.3  0.00000000000003  Azotobacter vinelandii DJ  Bacteria  normal  0.0555684  n/a   
 
 
-
 
NC_008148  Rxyl_0378  two component transcriptional regulator  34.96 
 
 
234 aa  81.3  0.00000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1569  DNA-binding response regulator ResD  35.04 
 
 
250 aa  81.3  0.00000000000003  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.45334e-32 
 
 
-
 
NC_011772  BCG9842_B3814  DNA-binding response regulator ResD  35.04 
 
 
238 aa  81.6  0.00000000000003  Bacillus cereus G9842  Bacteria  normal  hitchhiker  3.95849e-16 
 
 
-
 
NC_013510  Tcur_2644  GAF sensor hybrid histidine kinase  38.4 
 
 
1303 aa  81.6  0.00000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  0.229306  n/a   
 
 
-
 
NC_011725  BCB4264_A1531  DNA-binding response regulator ResD  35.04 
 
 
238 aa  81.6  0.00000000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1953  response regulator  33.78 
 
 
214 aa  81.3  0.00000000000003  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00404481  n/a   
 
 
-
 
NC_011729  PCC7424_5087  multi-sensor hybrid histidine kinase  40 
 
 
1058 aa  80.9  0.00000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_014210  Ndas_4322  two component transcriptional regulator, winged helix family  27.95 
 
 
231 aa  80.9  0.00000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_4198  two component transcriptional regulator, winged helix family  35.62 
 
 
226 aa  80.9  0.00000000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0720  response regulator receiver domain protein  39.66 
 
 
246 aa  80.9  0.00000000000004  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.351492 
 
 
-
 
NC_013216  Dtox_2180  GAF sensor hybrid histidine kinase  37.82 
 
 
922 aa  80.9  0.00000000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.238731  normal  0.0123004 
 
 
-
 
NC_013205  Aaci_0044  two component transcriptional regulator, winged helix family  34.68 
 
 
224 aa  80.9  0.00000000000004  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2752  multi-component transcriptional regulator, winged helix family  33.76 
 
 
799 aa  80.9  0.00000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011729  PCC7424_2841  response regulator receiver modulated GAF sensor protein  34.19 
 
 
308 aa  80.9  0.00000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.585847 
 
 
-
 
NC_009512  Pput_1695  integral membrane sensor hybrid histidine kinase  35.59 
 
 
643 aa  80.9  0.00000000000005  Pseudomonas putida F1  Bacteria  normal  normal  0.695799 
 
 
-
 
NC_010001  Cphy_1679  two component transcriptional regulator  33.61 
 
 
224 aa  80.9  0.00000000000005  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0540  GAF sensor hybrid histidine kinase  38.66 
 
 
1816 aa  80.5  0.00000000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.46685  normal 
 
 
-
 
NC_009767  Rcas_0960  two component transcriptional regulator  39.67 
 
 
236 aa  80.5  0.00000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0214647 
 
 
-
 
NC_009253  Dred_2981  two component transcriptional regulator  34.33 
 
 
229 aa  80.5  0.00000000000005  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.0000000201285  n/a   
 
 
-
 
NC_013889  TK90_2400  response regulator receiver protein  38.33 
 
 
135 aa  80.5  0.00000000000005  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.726464 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  40.62 
 
 
566 aa  80.1  0.00000000000006  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_012669  Bcav_0840  two component transcriptional regulator, winged helix family  34.19 
 
 
241 aa  80.5  0.00000000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.214337  normal  0.533835 
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  38.76 
 
 
226 aa  80.5  0.00000000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1740  two component transcriptional regulator, winged helix family  35.29 
 
 
225 aa  80.1  0.00000000000006  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000204942  n/a   
 
 
-
 
NC_009439  Pmen_1730  multi-sensor hybrid histidine kinase  32.41 
 
 
916 aa  80.1  0.00000000000006  Pseudomonas mendocina ymp  Bacteria  normal  0.0675189  normal 
 
 
-
 
NC_009674  Bcer98_1200  two component transcriptional regulator  35.9 
 
 
238 aa  80.1  0.00000000000006  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3485  two component transcriptional regulator  39.67 
 
 
236 aa  80.5  0.00000000000006  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0195  two component transcriptional regulator  27.38 
 
 
243 aa  80.1  0.00000000000007  Roseiflexus sp. RS-1  Bacteria  normal  hitchhiker  0.00716616 
 
 
-
 
NC_007333  Tfu_2910  response regulator receiver  37.82 
 
 
230 aa  80.1  0.00000000000007  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_0876  response regulator receiver  36.89 
 
 
526 aa  80.1  0.00000000000007  Pedobacter heparinus DSM 2366  Bacteria  normal  hitchhiker  0.00183507 
 
 
-
 
NC_013037  Dfer_1809  two component transcriptional regulator, winged helix family  38.14 
 
 
226 aa  80.1  0.00000000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4344  two component transcriptional regulator  36.57 
 
 
239 aa  80.1  0.00000000000007  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.325933  normal  0.345767 
 
 
-
 
NC_009674  Bcer98_0547  two component transcriptional regulator  36.97 
 
 
224 aa  79.7  0.00000000000008  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  36.22 
 
 
367 aa  79.7  0.00000000000008  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3226  Hpt sensor hybrid histidine kinase  38.1 
 
 
1251 aa  79.7  0.00000000000008  Magnetococcus sp. MC-1  Bacteria  normal  0.0796968  normal  0.806997 
 
 
-
 
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