Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2032 |
Symbol | |
ID | 5136722 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2187779 |
End bp | 2190562 |
Gene Length | 2784 bp |
Protein Length | 927 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640533488 |
Product | hybrid sensory histidine kinase BarA |
Protein accession | YP_001217955 |
Protein GI | 147673482 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG4999] Uncharacterized domain of BarA-like signal transduction histidine kinases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0864566 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCAAA GATATGGCTT GCGCGCCCGC GTTATGACGC TCACTTTGGC ACCTACCCTG ATTATTGGTC TGCTGCTTAG CGCTCTGTTC TCTTTTAACC GTTATCACGA TTTAGAAACT CAAGTGATCA ATTCCGGTGC CAGCATCATT GAGCCATTAG CGATCGCCAG TGAAGATGCG CTGCGTATGC AGAGCCGAGA ATCGGTGCGA CGCATTATCA GCTATGCCCA CCGTAAGAAT TCTAAGTTAG TACGCAGCAT CGCGGTGTTT GATGCCAATC ATGAGCTGTT TGTCACCTCG AACTTCCACC CCAATTTCGA AAAGCTGATG TATCCCAAGG ATAAGCCGAT CCCGTTTCTG AGTAGTTCCG CGATTGACGA GAACACGCTG ATATTACGAA CGCCGATCAT TTCTGAACGC ACCGTGCTCG ACAATGGCGA TGCCAATCCC GCCACACCGG TGATGGGTTA TATTGCGATA GAACTGGATC TCTCCTCACT GCGTTTACAA CAGTATCAGG AAATTTTTTC CGCAGGTTTA GTGCTAGTGA TCGGGATTTT GCTGTCAGGG GTATTTGCTT CGCGCTTGAT GTACGATGTG ACTCGCCCAA TCACTCACAT GAAAAATATG GTCGACCGCA TTCGTCGCGG CCATTTGGAT GTGCGGATTG AAGGTAAAAT GCACGGCGAG TTGGATACGC TGAAAAAAGG CATCAACGCG ATGGCGGTAT CGCTCTCCGA ATACCATGTC GAAATGCAGC ACAGTATCGA CCAAGCGACG TCTGATCTCC GAGAAACCCT TGAACAGCTT GAGATTCAAA ACGTTGAACT CGATATTGCC AAAAAGCGCG CTCAAGAAGC GGCACGAGTG AAATCCGAAT TTCTGGCTAA CATGTCCCAT GAGCTGCGCA CCCCACTCAA TGGTGTGATT GGTTTTACGC GGCAAATGCT GAAAACCCAG CTGACCAACA GCCAAGCAGA CTATCTACAA ACCATTGAAA AATCAGCCAA TAACCTTCTC ACCATCATCA ATGACATTTT AGATTTTTCC AAACTCGAAG CCGGTAAGCT GGCTTTGGAG AATATTCCGT TTGAATTCCA AGAAGTATTG GAAGAGGTGG TTAATCTGCA AGCCACCAGC GCGCATGAAA AAGGGTTAGA AATCACCCTC AAGATTGACC CGAAAATTCC GCGCGGCGTG GTGGGCGATC CGCTACGGAT TCAGCAAGTC TTGACCAACT TGGTCGGTAA CTCCATTAAG TTTACCGAAC GGGGTAATAT AGACGTGAGC GTGGAAATGC GCGCGCTACG CGATGATGTG ATCGACCTAC AATTTATGGT GCGCGACACC GGAATTGGCA TTTCTGAGCG CCAGCAAGCT CAGTTATTCC AAGCCTTTAG CCAAGCGGAT GCCAGTATTT CACGCCGTTA TGGCGGTACA GGACTTGGGC TGGTGATTAC CCAAAAACTG GTCAGCCATA TGGGCGGAGA AATCAGCCTC ACCAGCCGTT TGCACCAAGG TTCAACCTTC TGGTTCACGC TTCGCCTGCA TACCACAGAG CTGCCTCTCA ATGACGGTTA TAACGCGGAC TCGCTCAATC ATCGCCACTT ACTGCTGATT GAGCCCAATA TGCAAGCCGC TGCGATTGTG CAGCAAACGC TGGTCCAAAG TGGTTTAGAA GTGACGTACC GCTCAGCGAT TCCGGAAGAG CAACACGTTT ACGACTATGT ACTGCTCAAC TTAGCGCCAA GTAAAGAGAC CAATCCGACC TTGGTGGAGC TTTGGGTGCA GCGTGCGTTA GCCATGACCC ACAATGTGAT TGTCGGTGTG CCGAGCACAG AACTGGCGCT CGCCGACCAA TTGATGCAGC GCTACCCAGT AAAATGCATC AGTAAGCCTT TATCTCGCAA AAAACTGCTA CAAACCTTGG CAGCGCAACA GCCGCAACTC GCCAATACCA GTTTGCCCAA ACCTCAAGCC GATAAGCTTC CGCTGTGCGT CATGGCGGTC GATGATAATC CAGCCAACCT CAAACTCATC ACTGCGCTAT TGCAAGAGCG GGTTGAGTAC GTGGTCTCTT GCACCAGCGG TCAGGAGGCG ATTGAGCAAG CTCAGAGCCG TCAGTTCGAT ATCATCTTGA TGGACATTCA AATGCCGCAC ATGGATGGAG TGACCGCTTG TAAAGCGATC AAGCAGCTCA AAGGGTATCG TGATACGCCA GTCATTGCGG TCACCGCACA TGCCATGGCA GGCGAGCGTG ACCGTCTACT GAAAGCGGGG ATGGATGATT ACCTGACCAA ACCGATTGAA GAGCATATTC TGCAACAAGT GTTAGTCCAT TGGAGCCCGC ACACGCGCAG TAAACAGGTC GCGAAAGTGA CTCCACCCGA TGGTGCCGCG GTCATATCTA ACGCCTTACC CTCATCACCG CCAGCAGAAG AGGCCATTAT TGATTGGCCT GTCGCGCTGC GCCAATCCGC CAATAAAGAG GATCTCGCCA AAGAGATGCT CGGGATGTTG GTCGATTATT TGCGGGAAGT CGAAACTGTG GTCAATACTG CGCTTGAGGA TGAAGAATAC CCCGCTAGCG ATCTGCTGCA TCATATCCAT AAGTTGCATG GCAGTTGTTC GTACAGCGGC GTACCGCGCC TGCGAAAAAT CTGCGCCAGT TTGGAGCAAG CGCTGCGCAA TGGGGCGAGC ATCGATGAGT TAGAGCCTGA GTTATTTGAG CTGCAAGATG AGATGGCGAA AGTGCTCGAA GCCTCTCGCG ACTATCTGAA CTGA
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Protein sequence | MTQRYGLRAR VMTLTLAPTL IIGLLLSALF SFNRYHDLET QVINSGASII EPLAIASEDA LRMQSRESVR RIISYAHRKN SKLVRSIAVF DANHELFVTS NFHPNFEKLM YPKDKPIPFL SSSAIDENTL ILRTPIISER TVLDNGDANP ATPVMGYIAI ELDLSSLRLQ QYQEIFSAGL VLVIGILLSG VFASRLMYDV TRPITHMKNM VDRIRRGHLD VRIEGKMHGE LDTLKKGINA MAVSLSEYHV EMQHSIDQAT SDLRETLEQL EIQNVELDIA KKRAQEAARV KSEFLANMSH ELRTPLNGVI GFTRQMLKTQ LTNSQADYLQ TIEKSANNLL TIINDILDFS KLEAGKLALE NIPFEFQEVL EEVVNLQATS AHEKGLEITL KIDPKIPRGV VGDPLRIQQV LTNLVGNSIK FTERGNIDVS VEMRALRDDV IDLQFMVRDT GIGISERQQA QLFQAFSQAD ASISRRYGGT GLGLVITQKL VSHMGGEISL TSRLHQGSTF WFTLRLHTTE LPLNDGYNAD SLNHRHLLLI EPNMQAAAIV QQTLVQSGLE VTYRSAIPEE QHVYDYVLLN LAPSKETNPT LVELWVQRAL AMTHNVIVGV PSTELALADQ LMQRYPVKCI SKPLSRKKLL QTLAAQQPQL ANTSLPKPQA DKLPLCVMAV DDNPANLKLI TALLQERVEY VVSCTSGQEA IEQAQSRQFD IILMDIQMPH MDGVTACKAI KQLKGYRDTP VIAVTAHAMA GERDRLLKAG MDDYLTKPIE EHILQQVLVH WSPHTRSKQV AKVTPPDGAA VISNALPSSP PAEEAIIDWP VALRQSANKE DLAKEMLGML VDYLREVETV VNTALEDEEY PASDLLHHIH KLHGSCSYSG VPRLRKICAS LEQALRNGAS IDELEPELFE LQDEMAKVLE ASRDYLN
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