Gene VC0395_A2032 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2032 
Symbol 
ID5136722 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2187779 
End bp2190562 
Gene Length2784 bp 
Protein Length927 aa 
Translation table11 
GC content51% 
IMG OID640533488 
Producthybrid sensory histidine kinase BarA 
Protein accessionYP_001217955 
Protein GI147673482 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG4999] Uncharacterized domain of BarA-like signal transduction histidine kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0864566 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCAAA GATATGGCTT GCGCGCCCGC GTTATGACGC TCACTTTGGC ACCTACCCTG 
ATTATTGGTC TGCTGCTTAG CGCTCTGTTC TCTTTTAACC GTTATCACGA TTTAGAAACT
CAAGTGATCA ATTCCGGTGC CAGCATCATT GAGCCATTAG CGATCGCCAG TGAAGATGCG
CTGCGTATGC AGAGCCGAGA ATCGGTGCGA CGCATTATCA GCTATGCCCA CCGTAAGAAT
TCTAAGTTAG TACGCAGCAT CGCGGTGTTT GATGCCAATC ATGAGCTGTT TGTCACCTCG
AACTTCCACC CCAATTTCGA AAAGCTGATG TATCCCAAGG ATAAGCCGAT CCCGTTTCTG
AGTAGTTCCG CGATTGACGA GAACACGCTG ATATTACGAA CGCCGATCAT TTCTGAACGC
ACCGTGCTCG ACAATGGCGA TGCCAATCCC GCCACACCGG TGATGGGTTA TATTGCGATA
GAACTGGATC TCTCCTCACT GCGTTTACAA CAGTATCAGG AAATTTTTTC CGCAGGTTTA
GTGCTAGTGA TCGGGATTTT GCTGTCAGGG GTATTTGCTT CGCGCTTGAT GTACGATGTG
ACTCGCCCAA TCACTCACAT GAAAAATATG GTCGACCGCA TTCGTCGCGG CCATTTGGAT
GTGCGGATTG AAGGTAAAAT GCACGGCGAG TTGGATACGC TGAAAAAAGG CATCAACGCG
ATGGCGGTAT CGCTCTCCGA ATACCATGTC GAAATGCAGC ACAGTATCGA CCAAGCGACG
TCTGATCTCC GAGAAACCCT TGAACAGCTT GAGATTCAAA ACGTTGAACT CGATATTGCC
AAAAAGCGCG CTCAAGAAGC GGCACGAGTG AAATCCGAAT TTCTGGCTAA CATGTCCCAT
GAGCTGCGCA CCCCACTCAA TGGTGTGATT GGTTTTACGC GGCAAATGCT GAAAACCCAG
CTGACCAACA GCCAAGCAGA CTATCTACAA ACCATTGAAA AATCAGCCAA TAACCTTCTC
ACCATCATCA ATGACATTTT AGATTTTTCC AAACTCGAAG CCGGTAAGCT GGCTTTGGAG
AATATTCCGT TTGAATTCCA AGAAGTATTG GAAGAGGTGG TTAATCTGCA AGCCACCAGC
GCGCATGAAA AAGGGTTAGA AATCACCCTC AAGATTGACC CGAAAATTCC GCGCGGCGTG
GTGGGCGATC CGCTACGGAT TCAGCAAGTC TTGACCAACT TGGTCGGTAA CTCCATTAAG
TTTACCGAAC GGGGTAATAT AGACGTGAGC GTGGAAATGC GCGCGCTACG CGATGATGTG
ATCGACCTAC AATTTATGGT GCGCGACACC GGAATTGGCA TTTCTGAGCG CCAGCAAGCT
CAGTTATTCC AAGCCTTTAG CCAAGCGGAT GCCAGTATTT CACGCCGTTA TGGCGGTACA
GGACTTGGGC TGGTGATTAC CCAAAAACTG GTCAGCCATA TGGGCGGAGA AATCAGCCTC
ACCAGCCGTT TGCACCAAGG TTCAACCTTC TGGTTCACGC TTCGCCTGCA TACCACAGAG
CTGCCTCTCA ATGACGGTTA TAACGCGGAC TCGCTCAATC ATCGCCACTT ACTGCTGATT
GAGCCCAATA TGCAAGCCGC TGCGATTGTG CAGCAAACGC TGGTCCAAAG TGGTTTAGAA
GTGACGTACC GCTCAGCGAT TCCGGAAGAG CAACACGTTT ACGACTATGT ACTGCTCAAC
TTAGCGCCAA GTAAAGAGAC CAATCCGACC TTGGTGGAGC TTTGGGTGCA GCGTGCGTTA
GCCATGACCC ACAATGTGAT TGTCGGTGTG CCGAGCACAG AACTGGCGCT CGCCGACCAA
TTGATGCAGC GCTACCCAGT AAAATGCATC AGTAAGCCTT TATCTCGCAA AAAACTGCTA
CAAACCTTGG CAGCGCAACA GCCGCAACTC GCCAATACCA GTTTGCCCAA ACCTCAAGCC
GATAAGCTTC CGCTGTGCGT CATGGCGGTC GATGATAATC CAGCCAACCT CAAACTCATC
ACTGCGCTAT TGCAAGAGCG GGTTGAGTAC GTGGTCTCTT GCACCAGCGG TCAGGAGGCG
ATTGAGCAAG CTCAGAGCCG TCAGTTCGAT ATCATCTTGA TGGACATTCA AATGCCGCAC
ATGGATGGAG TGACCGCTTG TAAAGCGATC AAGCAGCTCA AAGGGTATCG TGATACGCCA
GTCATTGCGG TCACCGCACA TGCCATGGCA GGCGAGCGTG ACCGTCTACT GAAAGCGGGG
ATGGATGATT ACCTGACCAA ACCGATTGAA GAGCATATTC TGCAACAAGT GTTAGTCCAT
TGGAGCCCGC ACACGCGCAG TAAACAGGTC GCGAAAGTGA CTCCACCCGA TGGTGCCGCG
GTCATATCTA ACGCCTTACC CTCATCACCG CCAGCAGAAG AGGCCATTAT TGATTGGCCT
GTCGCGCTGC GCCAATCCGC CAATAAAGAG GATCTCGCCA AAGAGATGCT CGGGATGTTG
GTCGATTATT TGCGGGAAGT CGAAACTGTG GTCAATACTG CGCTTGAGGA TGAAGAATAC
CCCGCTAGCG ATCTGCTGCA TCATATCCAT AAGTTGCATG GCAGTTGTTC GTACAGCGGC
GTACCGCGCC TGCGAAAAAT CTGCGCCAGT TTGGAGCAAG CGCTGCGCAA TGGGGCGAGC
ATCGATGAGT TAGAGCCTGA GTTATTTGAG CTGCAAGATG AGATGGCGAA AGTGCTCGAA
GCCTCTCGCG ACTATCTGAA CTGA
 
Protein sequence
MTQRYGLRAR VMTLTLAPTL IIGLLLSALF SFNRYHDLET QVINSGASII EPLAIASEDA 
LRMQSRESVR RIISYAHRKN SKLVRSIAVF DANHELFVTS NFHPNFEKLM YPKDKPIPFL
SSSAIDENTL ILRTPIISER TVLDNGDANP ATPVMGYIAI ELDLSSLRLQ QYQEIFSAGL
VLVIGILLSG VFASRLMYDV TRPITHMKNM VDRIRRGHLD VRIEGKMHGE LDTLKKGINA
MAVSLSEYHV EMQHSIDQAT SDLRETLEQL EIQNVELDIA KKRAQEAARV KSEFLANMSH
ELRTPLNGVI GFTRQMLKTQ LTNSQADYLQ TIEKSANNLL TIINDILDFS KLEAGKLALE
NIPFEFQEVL EEVVNLQATS AHEKGLEITL KIDPKIPRGV VGDPLRIQQV LTNLVGNSIK
FTERGNIDVS VEMRALRDDV IDLQFMVRDT GIGISERQQA QLFQAFSQAD ASISRRYGGT
GLGLVITQKL VSHMGGEISL TSRLHQGSTF WFTLRLHTTE LPLNDGYNAD SLNHRHLLLI
EPNMQAAAIV QQTLVQSGLE VTYRSAIPEE QHVYDYVLLN LAPSKETNPT LVELWVQRAL
AMTHNVIVGV PSTELALADQ LMQRYPVKCI SKPLSRKKLL QTLAAQQPQL ANTSLPKPQA
DKLPLCVMAV DDNPANLKLI TALLQERVEY VVSCTSGQEA IEQAQSRQFD IILMDIQMPH
MDGVTACKAI KQLKGYRDTP VIAVTAHAMA GERDRLLKAG MDDYLTKPIE EHILQQVLVH
WSPHTRSKQV AKVTPPDGAA VISNALPSSP PAEEAIIDWP VALRQSANKE DLAKEMLGML
VDYLREVETV VNTALEDEEY PASDLLHHIH KLHGSCSYSG VPRLRKICAS LEQALRNGAS
IDELEPELFE LQDEMAKVLE ASRDYLN