Gene Plav_1017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_1017 
Symbol 
ID5456816 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp1112433 
End bp1113122 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content59% 
IMG OID640876587 
Producttwo component transcriptional regulator 
Protein accessionYP_001412296 
Protein GI154251472 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.957911 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value0.735899 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCCCG CCTCCCATCG CGTACTCGTC ATCGACGACG AACCGCCGAT CCGCAAACTG 
TTGCGCATGG GCCTGAGTGC GCATGGCTAT GAAATTCAGG AGGCGCCGAA CGGCAGGACG
GCTCTGGACA TGCTTGCGCA GAATCCGGAT TTGATCATCC TCGATCTCGG GCTGCCGGAC
ATTCAGGGGC TTGACCTGCT GCGGACGATC CGAAGCCGCA ACGAGAGCGT TCCGATTGTC
GTCCTGTCCA GCCGTGGCGA CGAGACCGGC AAAGTCGAGG CACTCGACCT CGGCGCCGAC
GACTATGTGA CGAAGCCTTT CGGCATGGAT GAATTGCTTG CACGAATGAG GGCGGCGCTT
CGCCACCGGC TTCAGATGCA GGGCGAGCGA CCGGTCTTTC ATGTCGACGC GCTTGCCGTC
GACCTCGTGC GACGCATCGT CAAAGTGAAC GATAACGAGG TGAAGCTGTC TCCCAAGGAA
TACGACCTGC TACGCGTTCT CGTTCAGCAC GCGGGCAAGG TGTTGACGCA CAGATTTTTG
CTCGGCGAGT TGTGGGACGA ACTGACTGAC GCCCAATATC TGAGGGTCTA TGTCCGCCAA
CTCAGACAAA AGATCGAACC CGATCCCGAA CGGCCGGAAT ATATCCTGAC CGAAACCGGG
ATTGGCTACA GGCTGCGCGC ACCGGATTGA
 
Protein sequence
MSPASHRVLV IDDEPPIRKL LRMGLSAHGY EIQEAPNGRT ALDMLAQNPD LIILDLGLPD 
IQGLDLLRTI RSRNESVPIV VLSSRGDETG KVEALDLGAD DYVTKPFGMD ELLARMRAAL
RHRLQMQGER PVFHVDALAV DLVRRIVKVN DNEVKLSPKE YDLLRVLVQH AGKVLTHRFL
LGELWDELTD AQYLRVYVRQ LRQKIEPDPE RPEYILTETG IGYRLRAPD