More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_3066 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003295  RSc3136  putative methyl-accepting chemotaxis transmembrane protein  88.97 
 
 
661 aa  1114    Ralstonia solanacearum GMI1000  Bacteria  normal  0.598743  normal 
 
 
-
 
NC_012856  Rpic12D_3066  methyl-accepting chemotaxis sensory transducer  100 
 
 
662 aa  1330    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3412  methyl-accepting chemotaxis sensory transducer  98.49 
 
 
662 aa  1312    Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2939  methyl-accepting chemotaxis sensory transducer  47.16 
 
 
672 aa  559  1e-158  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4309  methyl-accepting chemotaxis sensory transducer  47.94 
 
 
659 aa  555  1e-157  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.226298 
 
 
-
 
NC_010676  Bphyt_6894  methyl-accepting chemotaxis sensory transducer  46.7 
 
 
657 aa  551  1e-155  Burkholderia phytofirmans PsJN  Bacteria  normal  0.068141  normal  0.373533 
 
 
-
 
NC_010623  Bphy_4315  methyl-accepting chemotaxis sensory transducer  46.42 
 
 
656 aa  523  1e-147  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1684  methyl-accepting chemotaxis protein I  46.85 
 
 
676 aa  517  1.0000000000000001e-145  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1080  methyl-accepting chemotaxis protein  45.64 
 
 
687 aa  509  1e-143  Burkholderia pseudomallei 668  Bacteria  normal  0.469209  n/a   
 
 
-
 
NC_008391  Bamb_3714  methyl-accepting chemotaxis sensory transducer  47.49 
 
 
660 aa  511  1e-143  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4192  methyl-accepting chemotaxis sensory transducer  47.44 
 
 
660 aa  510  1e-143  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0520721  normal  0.510764 
 
 
-
 
NC_010515  Bcenmc03_3221  methyl-accepting chemotaxis sensory transducer  47.42 
 
 
660 aa  508  9.999999999999999e-143  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.229974 
 
 
-
 
NC_008061  Bcen_4070  methyl-accepting chemotaxis sensory transducer  47.26 
 
 
660 aa  507  9.999999999999999e-143  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4296  methyl-accepting chemotaxis sensory transducer  47.26 
 
 
660 aa  507  9.999999999999999e-143  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_3594  methyl-accepting chemotaxis sensory transducer  41.09 
 
 
646 aa  503  1e-141  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3437  methyl-accepting chemotaxis sensory transducer  40.93 
 
 
646 aa  501  1e-140  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.143807  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0994  methyl-accepting chemotaxis protein  48.71 
 
 
678 aa  500  1e-140  Burkholderia pseudomallei 1106a  Bacteria  normal  0.799426  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2308  methyl-accepting chemotaxis protein II  48.24 
 
 
684 aa  497  1e-139  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0792  methyl-accepting chemotaxis sensory transducer  40.87 
 
 
651 aa  483  1e-135  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0140  putative methyl-accepting chemotaxis protein  48.4 
 
 
684 aa  482  1e-135  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0610174  n/a   
 
 
-
 
NC_010002  Daci_3084  methyl-accepting chemotaxis sensory transducer  40.95 
 
 
719 aa  484  1e-135  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0772  methyl-accepting chemotaxis sensory transducer  41.18 
 
 
646 aa  484  1e-135  Dickeya zeae Ech1591  Bacteria  hitchhiker  0.00540264  n/a   
 
 
-
 
NC_009436  Ent638_0366  methyl-accepting chemotaxis sensory transducer  40.34 
 
 
643 aa  463  1e-129  Enterobacter sp. 638  Bacteria  normal  normal  0.0151066 
 
 
-
 
NC_011992  Dtpsy_3481  methyl-accepting chemotaxis sensory transducer  43.59 
 
 
674 aa  435  1e-120  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_4123  methyl-accepting chemotaxis sensory transducer  43.74 
 
 
674 aa  430  1e-119  Acidovorax sp. JS42  Bacteria  normal  0.162807  normal  0.87643 
 
 
-
 
NC_008784  BMASAVP1_0507  methyl-accepting chemotaxis protein  45.17 
 
 
630 aa  392  1e-108  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4184  methyl-accepting chemotaxis sensory transducer  43.29 
 
 
680 aa  395  1e-108  Variovorax paradoxus S110  Bacteria  normal  0.12793  n/a   
 
 
-
 
NC_013421  Pecwa_4443  methyl-accepting chemotaxis sensory transducer  54.4 
 
 
630 aa  335  2e-90  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_4161  methyl-accepting chemotaxis sensory transducer  54.4 
 
 
628 aa  334  3e-90  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1078  methyl-accepting chemotaxis sensory transducer  49.26 
 
 
587 aa  327  3e-88  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  55.66 
 
 
583 aa  325  2e-87  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_011992  Dtpsy_1752  methyl-accepting chemotaxis sensory transducer  50.95 
 
 
523 aa  324  3e-87  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1951  methyl-accepting chemotaxis sensory transducer  50.65 
 
 
508 aa  324  4e-87  Acidovorax sp. JS42  Bacteria  normal  normal  0.747742 
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  48.14 
 
 
585 aa  321  3e-86  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_012857  Rpic12D_4162  methyl-accepting chemotaxis sensory transducer  60 
 
 
615 aa  320  5e-86  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  53.96 
 
 
569 aa  320  5e-86  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4050  methyl-accepting chemotaxis sensory transducer  60 
 
 
615 aa  320  5e-86  Ralstonia pickettii 12J  Bacteria  normal  0.996584  normal 
 
 
-
 
NC_008782  Ajs_3087  methyl-accepting chemotaxis sensory transducer  52 
 
 
527 aa  320  6e-86  Acidovorax sp. JS42  Bacteria  normal  normal  0.823637 
 
 
-
 
NC_011992  Dtpsy_3407  methyl-accepting chemotaxis sensory transducer  52.96 
 
 
653 aa  318  1e-85  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_4062  methyl-accepting chemotaxis sensory transducer  52.96 
 
 
653 aa  318  1e-85  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  54.27 
 
 
542 aa  318  2e-85  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5306  methyl-accepting chemotaxis sensory transducer  45.23 
 
 
565 aa  317  3e-85  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00488588  normal  0.0415564 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  57.36 
 
 
559 aa  317  4e-85  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  54.43 
 
 
584 aa  317  6e-85  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1405  methyl-accepting chemotaxis sensory transducer  58.63 
 
 
548 aa  317  6e-85  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  58.15 
 
 
559 aa  316  7e-85  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp1406  methyl-accepting chemotaxis I  58.79 
 
 
608 aa  315  1.9999999999999998e-84  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.13211 
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  58.1 
 
 
586 aa  315  1.9999999999999998e-84  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_010682  Rpic_2095  methyl-accepting chemotaxis sensory transducer  54.24 
 
 
520 aa  315  1.9999999999999998e-84  Ralstonia pickettii 12J  Bacteria  normal  0.649492  normal  0.265934 
 
 
-
 
NC_009832  Spro_0080  methyl-accepting chemotaxis sensory transducer  52.52 
 
 
642 aa  314  2.9999999999999996e-84  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_0034  methyl-accepting chemotaxis sensory transducer  51.86 
 
 
649 aa  314  3.9999999999999997e-84  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.38678  n/a   
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  54.93 
 
 
580 aa  314  3.9999999999999997e-84  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  55.62 
 
 
572 aa  314  3.9999999999999997e-84  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_009708  YpsIP31758_4122  methyl-accepting chemotaxis protein  51.86 
 
 
649 aa  314  3.9999999999999997e-84  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0071  methyl-accepting chemotaxis sensory transducer  53.73 
 
 
630 aa  313  7.999999999999999e-84  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  44.4 
 
 
585 aa  312  1e-83  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_010625  Bphy_6319  methyl-accepting chemotaxis sensory transducer  52.62 
 
 
549 aa  312  1e-83  Burkholderia phymatum STM815  Bacteria  normal  0.249944  normal 
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  55.23 
 
 
622 aa  312  1e-83  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1816  methyl-accepting chemotaxis sensory transducer  50.77 
 
 
651 aa  311  2e-83  Dickeya dadantii Ech703  Bacteria  normal  0.700193  n/a   
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  52.23 
 
 
596 aa  311  2e-83  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2526  methyl-accepting chemotaxis sensory transducer  54.35 
 
 
554 aa  312  2e-83  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  54.63 
 
 
578 aa  311  2.9999999999999997e-83  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_012912  Dd1591_1453  methyl-accepting chemotaxis sensory transducer  47.79 
 
 
532 aa  311  2.9999999999999997e-83  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0055  methyl-accepting chemotaxis sensory transducer  51.86 
 
 
628 aa  310  5.9999999999999995e-83  Dickeya zeae Ech1591  Bacteria  normal  0.608397  n/a   
 
 
-
 
NC_010159  YpAngola_A3774  methyl-accepting chemotaxis protein  52.77 
 
 
649 aa  310  6.999999999999999e-83  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5612  methyl-accepting chemotaxis protein II  55.39 
 
 
513 aa  309  9e-83  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2663  methyl-accepting chemotaxis sensory transducer  56.07 
 
 
520 aa  309  1.0000000000000001e-82  Methylibium petroleiphilum PM1  Bacteria  normal  0.0198398  normal 
 
 
-
 
NC_012856  Rpic12D_1771  methyl-accepting chemotaxis sensory transducer  53.67 
 
 
520 aa  309  1.0000000000000001e-82  Ralstonia pickettii 12D  Bacteria  normal  normal  0.841752 
 
 
-
 
NC_012917  PC1_3464  methyl-accepting chemotaxis sensory transducer  53.8 
 
 
551 aa  309  1.0000000000000001e-82  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  57.14 
 
 
598 aa  309  1.0000000000000001e-82  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_007947  Mfla_1933  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  53.87 
 
 
598 aa  308  3e-82  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  48.3 
 
 
661 aa  307  5.0000000000000004e-82  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4297  methyl-accepting chemotaxis sensory transducer  56.54 
 
 
471 aa  306  6e-82  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00689697  normal 
 
 
-
 
NC_012912  Dd1591_0769  methyl-accepting chemotaxis sensory transducer  53.27 
 
 
505 aa  306  6e-82  Dickeya zeae Ech1591  Bacteria  normal  0.0409416  n/a   
 
 
-
 
NC_011891  A2cp1_0045  methyl-accepting chemotaxis sensory transducer  36.95 
 
 
651 aa  306  7e-82  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  46.11 
 
 
584 aa  305  1.0000000000000001e-81  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  52.8 
 
 
537 aa  305  1.0000000000000001e-81  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  51.54 
 
 
589 aa  306  1.0000000000000001e-81  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_008825  Mpe_A0335  methyl-accepting chemotaxis protein I  53.64 
 
 
394 aa  306  1.0000000000000001e-81  Methylibium petroleiphilum PM1  Bacteria  normal  0.809135  normal  0.684623 
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  40 
 
 
543 aa  305  2.0000000000000002e-81  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1569  methyl-accepting chemotaxis sensory transducer  48.33 
 
 
554 aa  304  3.0000000000000004e-81  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5591  methyl-accepting chemotaxis sensory transducer  55.11 
 
 
519 aa  304  3.0000000000000004e-81  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.84 
 
 
584 aa  304  4.0000000000000003e-81  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_013421  Pecwa_2831  methyl-accepting chemotaxis sensory transducer  53.11 
 
 
554 aa  303  6.000000000000001e-81  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2081  methyl-accepting chemotaxis sensory transducer  48.66 
 
 
668 aa  303  7.000000000000001e-81  Dickeya dadantii Ech703  Bacteria  normal  0.622232  n/a   
 
 
-
 
NC_007760  Adeh_0030  methyl-accepting chemotaxis sensory transducer  36.85 
 
 
651 aa  303  8.000000000000001e-81  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  54.1 
 
 
579 aa  303  9e-81  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010524  Lcho_3485  methyl-accepting chemotaxis sensory transducer  54.13 
 
 
573 aa  303  9e-81  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000328178 
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  55.31 
 
 
595 aa  303  9e-81  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_010557  BamMC406_5887  methyl-accepting chemotaxis sensory transducer  46.4 
 
 
519 aa  302  1e-80  Burkholderia ambifaria MC40-6  Bacteria  normal  0.330697  normal 
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  52.37 
 
 
554 aa  302  1e-80  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  51.69 
 
 
566 aa  302  1e-80  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_007348  Reut_B5547  methyl-accepting chemotaxis sensory transducer  44.57 
 
 
520 aa  301  2e-80  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3266  methyl-accepting chemotaxis sensory transducer  54.29 
 
 
650 aa  302  2e-80  Delftia acidovorans SPH-1  Bacteria  normal  0.50478  hitchhiker  0.0000385615 
 
 
-
 
NC_008782  Ajs_1017  methyl-accepting chemotaxis sensory transducer  53.87 
 
 
591 aa  301  2e-80  Acidovorax sp. JS42  Bacteria  normal  0.696887  normal 
 
 
-
 
NC_008392  Bamb_6127  methyl-accepting chemotaxis sensory transducer  48.52 
 
 
519 aa  301  2e-80  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0128017 
 
 
-
 
NC_012912  Dd1591_1804  methyl-accepting chemotaxis sensory transducer  54.14 
 
 
562 aa  301  2e-80  Dickeya zeae Ech1591  Bacteria  normal  0.0522685  n/a   
 
 
-
 
NC_013421  Pecwa_3618  methyl-accepting chemotaxis sensory transducer  53.8 
 
 
551 aa  301  3e-80  Pectobacterium wasabiae WPP163  Bacteria  normal  0.453306  n/a   
 
 
-
 
NC_011992  Dtpsy_0931  methyl-accepting chemotaxis sensory transducer  53.87 
 
 
591 aa  300  4e-80  Acidovorax ebreus TPSY  Bacteria  normal  0.269909  n/a   
 
 
-
 
NC_003296  RS03153  putative methyl-accepting chemotaxis transducer transmembrane protein  60.19 
 
 
524 aa  300  4e-80  Ralstonia solanacearum GMI1000  Bacteria  normal  0.471775  normal  0.0817308 
 
 
-
 
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