Gene Daci_3084 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3084 
Symbol 
ID5748668 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3400521 
End bp3402680 
Gene Length2160 bp 
Protein Length719 aa 
Translation table11 
GC content67% 
IMG OID641298187 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001564107 
Protein GI160898525 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACATCG GTCAACGTTT CTGGCGCCGC CAAGGATTGG GCGCAAAGCT GTCACTCACC 
AATTTTGTCT GGGTCGCCGC CATCCTGGCG CTGCTGGTGC TGGGCATTGC CTGGGATGTG
AGCAAGTCCC TGCAGAAAAA AATGCACAAC GAGATGCAGC AGGGCGTCCA GATGCTGCAC
AACTTCGTCG AGTCCACCGA CAAGGAGCTG CGCCAGCGCA CCCAGTTCCT GGCCGACAGC
CTGGCGCGCA GCCTGCAGGG AACGCTCAGC CTGGACACCA GCGGCCATGA ACCCGTGCTG
AGCCTGGACG GCCAGCCGCT CAACGGCAAC GATGCGCACC TGCAGGCCTT CACGCGCAGC
ACCGGCGCCG TGGCCACCGT GTTTGCGGCC CAGGGGCAGG GCGACTTCGT GCGTATTGCC
ACCACGCTCA AAAACGAGAA AGGCGACCAG AGCGTGGCCG TGCTGGGCAG CCGGCTGGAC
CGCGCCCATC CCGCCTACGC CGCCATCCAG GCCGGCCAAA GCTACATGGG CCTGGCCCAC
CTGTTCGGCC GCCAGTACAT GACGCAGTAC CGCCCGCTCA AGGACGCTTC CGGCGCCACC
GTGGGCATCG CCTTCGTGGG CCAGGACTTC TCGCAACTGC TGGAGCACTT CAAGGACTCC
ATCCGCGCGC TCAAGGTGGG CCAGACCGGC TACTACTACG TGCTCAATGC CGAAGACGGC
CCCCAGCGCG GCCAACTGGT CGTGCATCCC GCCCTGGAAG GCCAGAACAT GAGCGATTCC
AAGGACGGCG ATGGCCGCTT CTTCATCCGC GACATGCTGG ACCGCAAGCA GGGCAGCATG
GCCTATCCCT GGACCAATCC GGGCGAAACC CAGGCACGCG ACAAGCTGGT CGTCTTCAGC
CAATACGCAC CCTGGAACTG GGTCATTGCC ACCAGCGCCT ACGTGGACGA AGCCGTGTCC
GAGACCCGCA GCCTGATCCT GCAGTTCGCC CTCATGGGCC TGGGCGCCGT GCTGCTGCTG
TCGGCGGCAT GGTTCTGGCT CATCCGCCGC ATGATCGTGC GCCCCCTGAA GCAGGCCAGC
CACATGGCCT ACGCCATTGC CGATGGCGAC CTGACCGTGC GCATCGCCAG CGACCGCCAG
GATGAAATCG GCCACTTGCT GGAAGCCATG AACACCACCA GCACGGGCCT GACGCGCGTG
GTCGGCAGCG TGAACGAACA GGCCCACAGC GTGGCCCTGG CCAGCGCGGA AATCGCCCAG
GGCAACCAGG ACCTGGCCGC CCGCACCGAA AGCGAAGCCA GCGCGCTGGA GCAGACCGCC
GCCGCCATGG AAGAGCTGGG CTCCACCGTG GCCCACAACG CAGACCACGC GCAATCGGCC
GACCGCATCA CGCGCGAGGC CCAGCGCGTC GTCACCGAAG GCGGGCAGGC CGTGCGCAAG
GTCGTGCAGA CCATGCAGGG CATAGACGCC AGCAGCAAGA AGATCGCCGA CATCATCGGC
GTCATCGACT CCATTGCCTT CCAGACCAAT ATCCTGGCCC TCAACGCCGC CGTGGAAGCG
GCCCGCGCGG GCGAGCATGG CCGGGGCTTT GCCGTGGTCG CCGAGGAAGT GCGCGCCCTT
GCAGGCCGCA GCGCCGAGGC CGCCAAGGAA ATCAAGCAGC TCATCAGCCA CAGCGTGGCC
GAAATCCACA CCGGCAACCA GGAGGCCGCG TTTGCCGGGG AAACCATGGA ACAGGCCATG
GAGGAAATCC GCAAGGTCAC CCAGCTCATC TCGGACATCA GCCACGCCAG CGCTGAGCAG
AACAGCGGCG TCGCCCAGGT GGCCGAGGCC ATCACCCACA TCGACCAGAC CACGCAGAAG
AACGCCGCCC TGGTCGAGGA AATGGCAGGC GCCGCCGCCG GCCTGCGCCA CCAGTCCGAT
CAACTGGTGC GCGTGGTCTC GGTCTTCAGG CTGCCGGGTG GCAGCGGTGC GCCGCTGCAG
ACTGCGGCCC GCGCAGCGAG CGCCACGCCA ACCACCGGCG CCGCAATCCC CCGTGCCCCG
GCACTGGCGC CCGGCGCTGC CGCGGCCAAG CCCGCAGCCC CTGCAGCCCC GGCAAAAACG
GCCGCCGCCA AGCCCGTCGC CATGGCCTGC ACGGCCGATG ACGACTGGGA CAGTTTCTGA
 
Protein sequence
MHIGQRFWRR QGLGAKLSLT NFVWVAAILA LLVLGIAWDV SKSLQKKMHN EMQQGVQMLH 
NFVESTDKEL RQRTQFLADS LARSLQGTLS LDTSGHEPVL SLDGQPLNGN DAHLQAFTRS
TGAVATVFAA QGQGDFVRIA TTLKNEKGDQ SVAVLGSRLD RAHPAYAAIQ AGQSYMGLAH
LFGRQYMTQY RPLKDASGAT VGIAFVGQDF SQLLEHFKDS IRALKVGQTG YYYVLNAEDG
PQRGQLVVHP ALEGQNMSDS KDGDGRFFIR DMLDRKQGSM AYPWTNPGET QARDKLVVFS
QYAPWNWVIA TSAYVDEAVS ETRSLILQFA LMGLGAVLLL SAAWFWLIRR MIVRPLKQAS
HMAYAIADGD LTVRIASDRQ DEIGHLLEAM NTTSTGLTRV VGSVNEQAHS VALASAEIAQ
GNQDLAARTE SEASALEQTA AAMEELGSTV AHNADHAQSA DRITREAQRV VTEGGQAVRK
VVQTMQGIDA SSKKIADIIG VIDSIAFQTN ILALNAAVEA ARAGEHGRGF AVVAEEVRAL
AGRSAEAAKE IKQLISHSVA EIHTGNQEAA FAGETMEQAM EEIRKVTQLI SDISHASAEQ
NSGVAQVAEA ITHIDQTTQK NAALVEEMAG AAAGLRHQSD QLVRVVSVFR LPGGSGAPLQ
TAARAASATP TTGAAIPRAP ALAPGAAAAK PAAPAAPAKT AAAKPVAMAC TADDDWDSF